Propagation of KdgR regulog to Enterobacter sakazakii ATCC BAA-894

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Enterobacter sakazakii ATCC BAA-894
Orthologous TF(s)	No orthologous TFs found
Regulated genes	15

Built upon 159 sites [see more]

Predicted regulatory interactions in *Enterobacter sakazakii ATCC BAA-894*
	Locus tag	Position	Score	Sequence
Position: -161 Score: 5.8 Sequence: AAATGAAACGATGTTTTAGTT Locus tag: ESA_00137
	ESA_00137	-161	5.8	AAATGAAACGATGTTTTAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655	b2843	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2	STM3018	-123	6.2	AAATGAAACGTTGTTTTATTT
		-58	5.3	AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895	CKO_04220	-119	6.2	AAATGAAACAACGTTTTATTT
		-51	4.4	AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638	Ent638_3296	-127	5.4	AACTGAAACAACGTTTTAAAT
		-60	5	AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM	y1887	-201	6	TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2400	-209	6.1	AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202	ETAE_1898	-129	5.6	AATCAAAACAGCATTTCATTT

Position: -52 Score: 5.5 Sequence: AAATAAAATGCAGTTTCATAA Position: -31 Score: 5.4 Sequence: AAAAGAAACGATATTTCATTG Locus tag: ESA_00448
	ESA_00448	-52	5.5	AAATAAAATGCAGTTTCATAA
		-31	5.4	AAAAGAAACGATATTTCATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03267	-58	5.8	AAATAAAATGATGTTTCATAA
		-37	5.6	AAACGAAATGTCATTTTATTT
Enterobacter sp. 638	Ent638_3298	-54	4.9	AAATAAAATGCAGTTCCATAA
		-33	5.4	AAACGAAATGACATTTTAATT

Position: -350 Score: 6.3 Sequence: AAATAAAACATTGTTTCATTT Position: -84 Score: 5 Sequence: CATTGAAACACTGTTTTGATA Locus tag: ESA_00449
	ESA_00449	-350	6.3	AAATAAAACATTGTTTCATTT
		-84	5	CATTGAAACACTGTTTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03266	-299	5.8	ATTTAAAACGATGTTTCATTT
		-103	5.6	TAATGAAACAATGTTTTGATA
Enterobacter sp. 638	Ent638_3297	-105	5	CATTGAAACGTCGTTTTGATA

Position: -108 Score: 5.1 Sequence: TTATGAAATGCTATTTTGATT Locus tag: ESA_01073
	ESA_01073	-108	5.1	TTATGAAATGCTATTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: setC
Ortholog function: lactose/glucose efflux system
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02601	-102	5	TTTTGAAACGCCTTTTTAATT
Enterobacter sp. 638	Ent638_2764	-109	4.9	TTTTGAAATGCTATTTTGATT

Position: -111 Score: 4.9 Sequence: ATTTGAAATGAGGTTTCAACT Locus tag: ESA_01214
	ESA_01214	-111	4.9	ATTTGAAATGAGGTTTCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655	b1985	-7	4.9	ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2	STM2013	-7	5	TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895	CKO_00837	-7	4.9	ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02447	-40	5.1	ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638	Ent638_2574	-74	5	ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM	y2593	-158	4.8	TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568	Spro_3106	-39	5.2	ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2762	-140	5.1	AATAGAAACGTCATTTTAAAA

Position: -97 Score: 5.6 Sequence: TTTTAAAACAATATTTCATTT Locus tag: ESA_01322
	ESA_01322	-97	5.6	TTTTAAAACAATATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1742	-54	5.1	AATTGAAATACAGTTTTAAAA

Position: -75 Score: 4.8 Sequence: CTTCGAAACGCTGTTTTATAA Locus tag: ESA_01357
	ESA_01357	-75	4.8	CTTCGAAACGCTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895	CKO_01081	-190	5.4	AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02390	-200	4.9	AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638	Ent638_2444	-189	5.6	AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3560	-167	4.7	AGTTAAAATGCCTTTTTATAA

Position: -185 Score: 5.2 Sequence: TTATGAAACAGCGTTTTTAAT Locus tag: ESA_02086
	ESA_02086	-185	5.2	TTATGAAACAGCGTTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655	b1676	-286	5	TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2	STM1378	-286	4.7	TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01709	-286	5	TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02133	-285	5	ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638	Ent638_1768	-286	5.1	TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568	Spro_2187	-203	4.1	AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1867	-259	5.1	ATACGGAACGTCGTTTCAATT

Position: -246 Score: 5.1 Sequence: CATTGAAACGGTGTTTTTATT Locus tag: ESA_02102
	ESA_02102	-246	5.1	CATTGAAACGGTGTTTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655	b1702	-222	5.3	TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2	STM1349	-226	4.9	AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895	CKO_01725	-249	5.5	AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02160	-254	5.1	AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638	Ent638_1745	-249	5.3	AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568	Spro_2174	-364	5.2	AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1853	-227	5.6	TATTAAAACGCCATTTCATTA

Position: -107 Score: 5.1 Sequence: AATAAAAACACCGTTTCAATG Locus tag: ESA_02103
	ESA_02103	-107	5.1	AATAAAAACACCGTTTCAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1703	-131	5.3	AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2	STM1348	-131	4.9	AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02161	-97	5.1	AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638	Ent638_1744	-107	5.3	ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568	Spro_2173	-134	5.2	ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1852	-94	5.6	TAATGAAATGGCGTTTTAATA

Position: -32 Score: 6 Sequence: AAATGAAACGCTGTTTTATAT Locus tag: ESA_03454
	ESA_03454	-32	6	AAATGAAACGCTGTTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -32 Score: 6 Sequence: AAATGAAACGCTGTTTTATAT Locus tag: ESA_03474
	ESA_03474	-32	6	AAATGAAACGCTGTTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -52 Score: 5.4 Sequence: AATCAAAACACCGTTTTATAA Locus tag: ESA_04264
	ESA_04264	-52	5.4	AATCAAAACACCGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895	CKO_04899	-138	5.1	TTTTAAACCATCGTTTCAATT
		-50	4.8	AACTAAAACAATGTTTTAACG
Enterobacter sp. 638	Ent638_3876	-134	4.5	TTTCAAACCATCGTTTCAAAA
		-49	4.8	AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0357	-239	5.6	ATATAAAACAGCATTTCATAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Enterobacter sakazakii ATCC BAA-894

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --