Propagation of KdgR regulog to Enterobacter sakazakii ATCC BAA-894
Source regulog: | KdgR - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | IclR |
Regulation mode: | repressor (activator) |
Biological process: | Pectin and polygalacturonate utlization |
Effector: | 2-keto-3-deoxygluconate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Enterobacter sakazakii ATCC BAA-894 |
Orthologous TF(s) | No orthologous TFs found |
Regulated genes | 15 |

Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -161
Score: 5.8 Sequence: AAATGAAACGATGTTTTAGTT
Locus tag: ESA_00137
|
||||
ESA_00137 | -161 | 5.8 | AAATGAAACGATGTTTTAGTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kduI | ||||
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
-63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
-58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
-51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
-60 | 5 | AATCGGAACATTGTTTCGTTA | ||
Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
Position: -52
Score: 5.5 Sequence: AAATAAAATGCAGTTTCATAA
Position: -31
Score: 5.4 Sequence: AAAAGAAACGATATTTCATTG
Locus tag: ESA_00448
|
||||
ESA_00448 | -52 | 5.5 | AAATAAAATGCAGTTTCATAA | |
-31 | 5.4 | AAAAGAAACGATATTTCATTG | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgM | ||||
Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03267 | -58 | 5.8 | AAATAAAATGATGTTTCATAA |
-37 | 5.6 | AAACGAAATGTCATTTTATTT | ||
Enterobacter sp. 638 | Ent638_3298 | -54 | 4.9 | AAATAAAATGCAGTTCCATAA |
-33 | 5.4 | AAACGAAATGACATTTTAATT | ||
Position: -350
Score: 6.3 Sequence: AAATAAAACATTGTTTCATTT
Position: -84
Score: 5 Sequence: CATTGAAACACTGTTTTGATA
Locus tag: ESA_00449
|
||||
ESA_00449 | -350 | 6.3 | AAATAAAACATTGTTTCATTT | |
-84 | 5 | CATTGAAACACTGTTTTGATA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ogl | ||||
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03266 | -299 | 5.8 | ATTTAAAACGATGTTTCATTT |
-103 | 5.6 | TAATGAAACAATGTTTTGATA | ||
Enterobacter sp. 638 | Ent638_3297 | -105 | 5 | CATTGAAACGTCGTTTTGATA |
Position: -108
Score: 5.1 Sequence: TTATGAAATGCTATTTTGATT
Locus tag: ESA_01073
|
||||
ESA_01073 | -108 | 5.1 | TTATGAAATGCTATTTTGATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: setC | ||||
Ortholog function: lactose/glucose efflux system | ||||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02601 | -102 | 5 | TTTTGAAACGCCTTTTTAATT |
Enterobacter sp. 638 | Ent638_2764 | -109 | 4.9 | TTTTGAAATGCTATTTTGATT |
Position: -111
Score: 4.9 Sequence: ATTTGAAATGAGGTTTCAACT
Locus tag: ESA_01214
|
||||
ESA_01214 | -111 | 4.9 | ATTTGAAATGAGGTTTCAACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yeeO | ||||
Ortholog function: predicted multidrug efflux system, MATE family | ||||
Escherichia coli str. K-12 substr. MG1655 | b1985 | -7 | 4.9 | ATTTGAAATGTGGTTTCACTT |
Salmonella typhimurium LT2 | STM2013 | -7 | 5 | TATTGAAATGTGGTTTCAACT |
Citrobacter koseri ATCC BAA-895 | CKO_00837 | -7 | 4.9 | ATTTGAAATGAGGTTTCAACT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA |
Enterobacter sp. 638 | Ent638_2574 | -74 | 5 | ATTTGAAATGTAGTTTCAACT |
Yersinia pestis KIM | y2593 | -158 | 4.8 | TCATGAAACTATGTTCCATTT |
Serratia proteamaculans 568 | Spro_3106 | -39 | 5.2 | ATTTGAAATGTTGTTTCACTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2762 | -140 | 5.1 | AATAGAAACGTCATTTTAAAA |
Position: -97
Score: 5.6 Sequence: TTTTAAAACAATATTTCATTT
Locus tag: ESA_01322
|
||||
ESA_01322 | -97 | 5.6 | TTTTAAAACAATATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: spiX | ||||
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
Position: -75
Score: 4.8 Sequence: CTTCGAAACGCTGTTTTATAA
Locus tag: ESA_01357
|
||||
ESA_01357 | -75 | 4.8 | CTTCGAAACGCTGTTTTATAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rhiT | ||||
Ortholog function: Rhamnogalacturonide transporter | ||||
Citrobacter koseri ATCC BAA-895 | CKO_01081 | -190 | 5.4 | AATAGAAACGCTGTTTTATAA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02390 | -200 | 4.9 | AAGAGAAATGCTGTTTTATAA |
Enterobacter sp. 638 | Ent638_2444 | -189 | 5.6 | AAAAGAAACGCTGTTTTATAA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3560 | -167 | 4.7 | AGTTAAAATGCCTTTTTATAA |
Position: -185
Score: 5.2 Sequence: TTATGAAACAGCGTTTTTAAT
Locus tag: ESA_02086
|
||||
ESA_02086 | -185 | 5.2 | TTATGAAACAGCGTTTTTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pykF | ||||
Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
Position: -246
Score: 5.1 Sequence: CATTGAAACGGTGTTTTTATT
Locus tag: ESA_02102
|
||||
ESA_02102 | -246 | 5.1 | CATTGAAACGGTGTTTTTATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsA | ||||
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
Position: -107
Score: 5.1 Sequence: AATAAAAACACCGTTTCAATG
Locus tag: ESA_02103
|
||||
ESA_02103 | -107 | 5.1 | AATAAAAACACCGTTTCAATG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsR | ||||
Ortholog function: PEP synthetase regulatory protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
Position: -32
Score: 6 Sequence: AAATGAAACGCTGTTTTATAT
Locus tag: ESA_03454
|
||||
ESA_03454 | -32 | 6 | AAATGAAACGCTGTTTTATAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
Position: -32
Score: 6 Sequence: AAATGAAACGCTGTTTTATAT
Locus tag: ESA_03474
|
||||
ESA_03474 | -32 | 6 | AAATGAAACGCTGTTTTATAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
Position: -52
Score: 5.4 Sequence: AATCAAAACACCGTTTTATAA
Locus tag: ESA_04264
|
||||
ESA_04264 | -52 | 5.4 | AATCAAAACACCGTTTTATAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rhiA | ||||
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
Citrobacter koseri ATCC BAA-895 | CKO_04899 | -138 | 5.1 | TTTTAAACCATCGTTTCAATT |
-50 | 4.8 | AACTAAAACAATGTTTTAACG | ||
Enterobacter sp. 638 | Ent638_3876 | -134 | 4.5 | TTTCAAACCATCGTTTCAAAA |
-49 | 4.8 | AACTAAAACAACGTTTTAACG | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0357 | -239 | 5.6 | ATATAAAACAGCATTTCATAT |