Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RhaS regulog to Erwinia carotovora subsp. atroseptica SCRI1043

Reference regulog properties
Source regulog: RhaS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Propagated regulon:
Target genome Erwinia carotovora subsp. atroseptica SCRI1043
Orthologous TF(s) ECA0441
Regulated genes 7
Built upon 31 sites [see more]
Predicted regulatory interactions in Erwinia carotovora subsp. atroseptica SCRI1043
Locus tag Position Score Sequence
Position: -279
Score: 10.1
Sequence: ATCATGACTTTTTTGCCA-(15)-TGGCAGCTATGAAAAGGT
Locus tag: ECA0118
ECA0118 -279 10.1 ATCATGACTTTTTTGCCA-(15)-TGGCAGCTATGAAAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldA
Ortholog function: Aldehyde dehydrogenase A (EC 1.2.1.22)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0118 -279 10.1 ATCATGACTTTTTTGCCA-(15)-TGGCAGCTATGAAAAGGT
Position: -105
Score: 9.7
Sequence: AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT
Locus tag: ECA0440
ECA0440 -105 9.7 AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: Rhamnulokinase (EC 2.7.1.5)
Citrobacter koseri ATCC BAA-895 CKO_03100 -160 10.7 ACCTTTGCCTCCTTGCCA-(15)-TGTCAGTAACAGGAAGGT
Enterobacter sp. 638 Ent638_4067 -107 10.1 ATCTTTGATTCCTTGCCA-(15)-TGTCAGTGGCGAGAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0440 -105 9.7 AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT
Escherichia coli str. K-12 substr. MG1655 b3904 -105 11.1 ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04213 -106 10.5 ACCTTTGCTTTCTTGCCA-(15)-TGTCCGTAACGAGAAGGT
Salmonella typhimurium LT2 STM4047 -105 11.3 ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Yersinia pestis KIM y0587 -212 10.1 ACTTTCGTCATTCTGCCA-(15)-TGGCAGTGATGAGAAGGT
Position: -262
Score: 9.8
Sequence: ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Locus tag: ECA0441
ECA0441 -262 9.8 ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon transcriptional activator RhaS, AraC family
Citrobacter koseri ATCC BAA-895 CKO_03099 -245 10.5 ACCTTCCTGTTACTGACA-(15)-TGGCAAGGAGGCAAAGGT
Enterobacter sp. 638 Ent638_4066 -245 9.1 ACCTTCTCGCCACTGACA-(15)-TGGCAAGGAATCAAAGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0441 -262 9.8 ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Escherichia coli str. K-12 substr. MG1655 b3905 -232 10.3 ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04214 -255 10.1 ACCTTCTCGTTACGGACA-(15)-TGGCAAGAAAGCAAAGGT
Salmonella typhimurium LT2 STM4048 -232 10.5 ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Yersinia pestis KIM y0590 -265 10.2 ACCTTCTCATCACTGCCA-(15)-TGGCAGAATGACGAAAGT
Position: -171
Score: 8.4
Sequence: ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Locus tag: ECA0450
ECA0450 -171 8.4 ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose:proton symporter
Citrobacter koseri ATCC BAA-895 CKO_03094 -126 8.5 ATAACGTGCTGGTTGCCA-(15)-CGGCAATCCTCAAAAGGT
Enterobacter sp. 638 Ent638_4064 -127 8.3 TTAACGCGTTGATTGCCA-(15)-CGGCAACCTTCTGAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0450 -171 8.4 ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Escherichia coli str. K-12 substr. MG1655 b3907 -123 9.3 TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04216 -127 8.6 TTAAGCCCATGGTTGCCA-(15)-TGGCAACGTCCTGAAGGC
Salmonella typhimurium LT2 STM4050 -271 9.7 TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT
-127 7.8 TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT
Yersinia pestis KIM y0593 -149 9.3 ACCTACTGAATTTTGCCA-(15)-AGGCAGTCAGCCGAAGGT
Position: -294
Score: 9.9
Sequence: TTCTTCCCGCTAGTGCCA-(15)-TGGCAGTAGCGGGAAGGA
Locus tag: ECA0804
ECA0804 -294 9.9 TTCTTCCCGCTAGTGCCA-(15)-TGGCAGTAGCGGGAAGGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiE
Ortholog function: Rhamnogalacturonate lyase precursor (EC 4.2.2.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0804 -294 9.9 TTCTTCCCGCTAGTGCCA-(15)-TGGCAGTAGCGGGAAGGA
Position: -238
Score: 10.7
Sequence: ATCTTTATCCTACTGCCA-(15)-TGGCAATAATGTGAAGGT
Locus tag: ECA2209
ECA2209 -238 10.7 ATCTTTATCCTACTGCCA-(15)-TGGCAATAATGTGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ECA2209
Ortholog function: putative oxidoreductase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2209 -238 10.7 ATCTTTATCCTACTGCCA-(15)-TGGCAATAATGTGAAGGT
Position: -123
Score: 10.6
Sequence: ATCTTCCCTGTGCTGCCA-(15)-TGGCAAAAGCGCAAAGGT
Locus tag: ECA3560
ECA3560 -123 10.6 ATCTTCCCTGTGCTGCCA-(15)-TGGCAAAAGCGCAAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895 CKO_01081 -147 11 CTCTTTGTATTTTTGCCA-(15)-TGGCAAAAATGAAAAGGT
Enterobacter sp. 638 Ent638_2444 -146 11.1 CTCTTTGCATTATTGCCA-(15)-TGGCAGAAACAGAAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3560 -123 10.6 ATCTTCCCTGTGCTGCCA-(15)-TGGCAAAAGCGCAAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02390 -157 10.3 CTCTTTGTCATTTTGCCA-(15)-TGGCAAAAGTACAAAGGT
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