Propagation of NtrC regulog to Dickeya dadantii 3937

Reference regulog properties
Source regulog:	NtrC - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Dickeya dadantii 3937
Orthologous TF(s)	null
Regulated genes	7

Built upon 130 sites [see more]

Predicted regulatory interactions in *Dickeya dadantii 3937*
	Locus tag	Position	Score	Sequence
Position: -29 Score: 6 Sequence: TGCACTAAAATGGTGCG Locus tag: null
	null	-29	6	TGCACTAAAATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655	b3869	-38	6.1	TGCACTAAAATGGTGCA
Salmonella typhimurium LT2	STM4006	-39	6.1	TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03143	-40	6	TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04177	-39	6	TGCACTAAATTGGTGCA
Enterobacter sp. 638	Ent638_4097	-38	5.8	TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946	EAM_0031	-40	5.7	TGCACTAAGTTGGTGCA
Yersinia pestis KIM	y3805	-29	5.3	TGCACCGAAACTGTGCA
Serratia proteamaculans 568	Spro_4882	-29	5.8	TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0028	-29	5.2	TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202	ETAE_3494	-28	6.1	TGCACCAAAATAGTGCA
Proteus mirabilis HI4320	PMI2883	-32	6.1	TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0236	-26	5.7	TGCACCAAAAAAGTGCA

Position: -223 Score: 5.3 Sequence: AGCACCATTTTGGTGCA Position: -204 Score: 5.1 Sequence: AACACCAAAATGGTGCT Locus tag: null
	null	-223	5.3	AGCACCATTTTGGTGCA
		-204	5.1	AACACCAAAATGGTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655	b3870	-221	5.9	TGCACCAACATGGTGCT
		-189	5.4	AGCACTATATTGGTGCA
Salmonella typhimurium LT2	STM4007	-224	5.5	TGCACCAATGTGGTGCT
		-192	5.2	AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03140	-202	5.9	TGCACCAACATGGTGCT
		-170	5.4	AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04178	-251	6	TGCACCAAAATGGTGCT
		-219	5.2	AGCACTATTTTGGTGCA
Enterobacter sp. 638	Ent638_4096	-237	5.3	CGCACCATTATGGTGCT
		-205	5.6	AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946	EAM_0032	-288	5.1	TGCACCAAAATGGTGAC
		-256	5.3	AGCACCAGAATGGTGCG
Yersinia pestis KIM	y3804	-384	5.6	TGCACCAAAATAGTGCC
		-353	5.5	GGCACCAAAATAGTGCA
Serratia proteamaculans 568	Spro_4881	-220	5.2	TGCACCATTACAGTGCT
		-188	5.2	TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0029	-218	5.3	TGCACCAAACAAGTGCA
		-186	5.4	AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202	ETAE_3493	-220	5.5	TGCACCAAGATTGTGCG
		-188	5.2	TGCACCATTATGGAGCA
Proteus mirabilis HI4320	PMI2882	-223	5.9	TGCACCAAAATTGTGCA
		-189	5.8	TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0237	-303	5.1	CGCACTAATATTGTGCG
		-272	5.9	TGCACCAATATAGTGCA

Position: -204 Score: 5.5 Sequence: TGCACCAAATTAGTGCC Position: -175 Score: 4.7 Sequence: TGCAGCAGTTTGGTGCG Locus tag: null
	null	-204	5.5	TGCACCAAATTAGTGCC
		-175	4.7	TGCAGCAGTTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Edwardsiella tarda EIB202	ETAE_2632	-228	4.3	TGCACCCTGATAGCGCA
		-176	4.7	TGCCATAAAACGGTGCG

Position: -225 Score: 4.7 Sequence: TGCACAAGAGTAGTGCG Locus tag: null
	null	-225	4.7	TGCACAAGAGTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjG
Ortholog function: Putrescine aminotransferase (EC 2.6.1.82)
Escherichia coli str. K-12 substr. MG1655	b3073	-215	4.6	TGCCCTGAAAACGTGCA
Citrobacter koseri ATCC BAA-895	CKO_04486	-84	4.6	CGCACCGTTCTGGTGCG
Enterobacter sp. 638	Ent638_3528	-215	5	TGCACTACTACAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1543	-219	4	CGCCCCAAAAGAGGGCG

Position: -205 Score: 4.9 Sequence: CGCACTGTTTTGGTGCA Locus tag: null
	null	-205	4.9	CGCACTGTTTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655	b1988	-205	5.1	TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00955	-206	4.8	TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02437	-206	5	TGCACCGTTGTAGTGCG
Enterobacter sp. 638	Ent638_2564	-206	4.8	TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946	EAM_2112	-228	4.3	TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2888	-197	4.5	TGCTTTAAGATGGTGCA

Position: -278 Score: 5.7 Sequence: TGCACCAATATTGTGCA Locus tag: null
	null	-278	5.7	TGCACCAATATTGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b2309	-162	5.5	TGCACTATCGTGGTGCA
Salmonella typhimurium LT2	STM2354	-211	4.4	GGAACTATCACGGTGCA
		-182	5.1	TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00478	-212	4.3	TTAACCATCACGGTGCG
		-183	5.8	TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02699	-215	5.3	TGCCCCAAAAGGGTGCA
		-185	4	TGGATCATTTCAGTGCA
Enterobacter sp. 638	Ent638_2858	-212	4.1	TTCCCTGTCACGGTGCG
		-182	5.2	TGACCCAATATGGTGCA
Yersinia pestis KIM	y1607	-123	4.8	AGCACTGAAATGGGGCA
Serratia proteamaculans 568	Spro_3326	-265	4.4	CGCACTGAATTAGGGCG
		-243	4.3	TGCACCATAATGATCCC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtrC regulog to Dickeya dadantii 3937

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --