Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Dickeya dadantii 3937

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Dickeya dadantii 3937
Orthologous TF(s) No orthologous TFs found
Regulated genes 8
Built upon 125 sites [see more]
Predicted regulatory interactions in Dickeya dadantii 3937
Locus tag Position Score Sequence
Position: -55
Score: 5.2
Sequence: TACCCCTTAGTGGGTA
Locus tag: null
null -55 5.2 TACCCCTTAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -268
Score: 4.2
Sequence: TACCTCCAAATAGTCA
Position: -169
Score: 4.3
Sequence: TAATCCTTTGGTGGTA
Position: -75
Score: 4
Sequence: TACGCCTTAGTGAGCA
Locus tag: null
null -268 4.2 TACCTCCAAATAGTCA
-169 4.3 TAATCCTTTGGTGGTA
-75 4 TACGCCTTAGTGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Serratia proteamaculans 568 Spro_2883 -193 3.8 TGATACTTTAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2031 -194 4.3 TAATTCTTTAGTGGTA
Proteus mirabilis HI4320 PMI3571 -237 4.8 TACTCCAAAGGGAGTA
Position: -247
Score: 5.1
Sequence: TACCCCTAAAGAAGTA
Locus tag: null
null -247 5.1 TACCCCTAAAGAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2030 -246 4.8 TACCCACTAGTGAGTA
-135 4.3 TACTCATTAAGGAGTG
Position: -300
Score: 4.2
Sequence: CACTCCCAAGGGGGTA
Position: -189
Score: 5.1
Sequence: TACTTCTTTAGGGGTA
Locus tag: null
null -300 4.2 CACTCCCAAGGGGGTA
-189 5.1 TACTTCTTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b1222 -228 4 TTACCCATAGTGAGTA
-118 3.8 TAACTCTTTCCGGGTA
Salmonella typhimurium LT2 STM1766 -230 4.3 TTACCCTTAATGAGTA
-120 4.5 TAACTCGTTATAGGTA
Citrobacter koseri ATCC BAA-895 CKO_01297 -249 4.4 TGCCCCTTAGTGAGTA
-139 4.5 TAACTCGTTATAGGTA
Serratia proteamaculans 568 Spro_2899 -138 4.7 TACTTCGTTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Proteus mirabilis HI4320 PMI3569 -73 4.5 TACTCCCTTTGGAGTA
Position: -82
Score: 3.7
Sequence: TAATCCTTTTTAGGGA
Position: -8
Score: 3.6
Sequence: TACCCACCATGCATTA
Locus tag: null
null -82 3.7 TAATCCTTTTTAGGGA
-8 3.6 TACCCACCATGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
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