Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Bacillus coahuilensis m4-4

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus coahuilensis m4-4
Orthologous TF(s) No orthologous TFs found
Regulated genes 10
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus coahuilensis m4-4
Locus tag Position Score Sequence
Position: -34
Score: 4.8
Sequence: AAGAACAGATGTTCTA
Locus tag: Bcoam_010100003009
Bcoam_010100003009 -34 4.8 AAGAACAGATGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcrA
Ortholog function: ATP-dependent DNA helicase
Bacillus subtilis subsp. subtilis str. 168 BSU06610 -36 4.4 TAGAACGTATGTTTTG
Bacillus amyloliquefaciens FZB42 RBAM_007010 -32 5.2 TAGAACATATGTTTGA
Bacillus pumilus SAFR-032 BPUM_0625 -32 5.2 TAGAACATAAGTTCGA
Bacillus licheniformis DSM 13 BLi00715 -33 5.2 TAGAACATATGTTTGA
Anoxybacillus flavithermus WK1 Aflv_0246 -13 4.5 GAGAACATATGTTTTG
Geobacillus kaustophilus HTA426 GK0275 -31 4.8 TAGAACATATGTTTTG
Bacillus halodurans C-125 BH0648 -8 4.6 AAGAACAAGTGTTTGG
Position: -41
Score: 5.2
Sequence: CAGAACATATGTTCTT
Locus tag: Bcoam_010100005550
Bcoam_010100005550 -41 5.2 CAGAACATATGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU10470 -35 4.3 TAGAACAAACGTTCCC
Bacillus amyloliquefaciens FZB42 RBAM_010690 -40 4.7 AAGAACAAAGGTTCTC
Paenibacillus sp. JDR-2 Pjdr2_1533 -42 4.8 TCGAACGTTTGTTCGC
Position: -297
Score: 5.1
Sequence: AAGAACATATGTTCTG
Locus tag: Bcoam_010100005555
Bcoam_010100005555 -297 5.1 AAGAACATATGTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjE
Ortholog function: Alkaline phosphatase like protein
Bacillus amyloliquefaciens FZB42 RBAM_010700 -128 4.4 GAGAACCTTTGTTCTT
Bacillus pumilus SAFR-032 BPUM_0990 -128 4.6 TAGAACACACGTTCTT
Bacillus licheniformis DSM 13 BLi01121 -179 4.5 AGGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_2232 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Oceanobacillus iheyensis HTE831 OB1179 -166 4.7 CAGATCATATGTTCGT
Position: -136
Score: 4.4
Sequence: ACGAATGGATGTTCGA
Locus tag: Bcoam_010100009310
Bcoam_010100009310 -136 4.4 ACGAATGGATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -127
Score: 4.3
Sequence: GCGAACATCCGTTCTC
Locus tag: Bcoam_010100010345
Bcoam_010100010345 -127 4.3 GCGAACATCCGTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -46
Score: 4.4
Sequence: CAGAACAGGTGTTTGA
Locus tag: Bcoam_010100014304
Bcoam_010100014304 -46 4.4 CAGAACAGGTGTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvA
Ortholog function: holliday junction DNA helicase, subunit A
Anoxybacillus flavithermus WK1 Aflv_0711 -282 4.1 CAGAAGATTCGTTTGA
Bacillus cereus ATCC 14579 BC4415 -85 4 GAGAACATTTGTTGGG
Bacillus clausii KSM-K16 ABC1554 -43 4.4 AGAAATAAATGTTCGC
Position: -75
Score: 4.4
Sequence: GAGAACATATTTTCTT
Locus tag: Bcoam_010100015726
Bcoam_010100015726 -75 4.4 GAGAACATATTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaE
Ortholog function: DNA polymerase III alpha subunit (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU29230 -76 4.5 AAGAACATTTGTTTCT
Bacillus amyloliquefaciens FZB42 RBAM_026280 -69 4.5 AAGAACATTTGTTTCT
Bacillus pumilus SAFR-032 BPUM_2566 -73 4.5 AAGAACATTTGTTTCT
Bacillus licheniformis DSM 13 BLi03072 -74 4.5 AAGAACATTTGTTTCT
Oceanobacillus iheyensis HTE831 OB2177 -161 4.1 GCGAAAAAACGTTCTT
-63 4.1 CCGTATACATGTTCGT
Position: -128
Score: 4.4
Sequence: TAAAACACACGTTCGC
Locus tag: Bcoam_010100018972
Bcoam_010100018972 -128 4.4 TAAAACACACGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT