Propagation of NtcA regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. ATCC 51142
Orthologous TF(s)	cce_0461
Regulated genes	31

Built upon 228 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. ATCC 51142*
	Locus tag	Position	Score	Sequence
Position: -73 Score: 4.2 Sequence: AGTATCAATTTCTACG Locus tag: cce_0198
	cce_0198	-73	4.2	AGTATCAATTTCTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002	SYNPCC7002_A1632	-87	3.9	TGTAACATccGgaACA
Cyanothece sp. ATCC 51142	cce_0198	-73	4.2	AGTATCAATTTCTACG
Cyanothece sp. PCC 8801	PCC8801_2329	-80	4.7	TGTATCAAATTCTACT
Cyanothece sp. PCC 7425	Cyan7425_1599	-78	4.6	TGTATCACTATCTACA
Microcystis aeruginosa NIES-843	MAE_09380	-80	4.1	gGTAgCAatTtcTACc
Nostoc sp. PCC 7120	all0602	-80	4.5	TGTAACAAAATCTACC
		-21	4.7	TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101	Tery_4333	-27	4	TGTATAAAATAACACA
Synechococcus elongatus PCC 7942	Synpcc7942_1242	-153	4.3	AGTAATCATTGATACT
		-82	4.9	AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_0984	-89	4.2	TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421	gvip213	-46	4	CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1	null	-122	3.9	TGTATCAATCAACACA

Position: -95 Score: 5.2 Sequence: TGTAGCAAATGTTACA Locus tag: cce_0259
	cce_0259	-95	5.2	TGTAGCAAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Cyanothece sp. ATCC 51142	cce_0259	-95	5.2	TGTAGCAAATGTTACA

Position: -58 Score: 4.4 Sequence: GGTAATCATTGATACA Locus tag: cce_0267
	cce_0267	-58	4.4	GGTAATCATTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbA3
Ortholog function: Photosystem II D1 protein
Cyanothece sp. ATCC 51142	cce_0267	-58	4.4	GGTAATCATTGATACA
Cyanothece sp. PCC 8801	PCC8801_3216	-59	4.4	AGTAGTTATTGCTACT

Position: 14 Score: 3.7 Sequence: TGTACCACAAGATAAA Locus tag: cce_0461
	cce_0461	14	3.7	TGTACCACAAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Position: -93 Score: 4.8 Sequence: TGTAGTCTTTGTTACA Locus tag: cce_0537
	cce_0537	-93	4.8	TGTAGTCTTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0076	-97	4.2	AGTATTGAAATATACA
Synechocystis sp. PCC 6803	ssr1562	-78	4.5	TGTAATCGATAATACA
Cyanothece sp. ATCC 51142	cce_0537	-137	4	TGTAAACTATGATATA
		-93	4.8	TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801	PCC8801_3101	-95	4.6	TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843	MAE_39690	-99	4.3	TGTAATCGTCGATACA

Position: -47 Score: 4.7 Sequence: TGTAACTGTAGTTACT Locus tag: cce_0624
	cce_0624	-47	4.7	TGTAACTGTAGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803	slr0851	-72	4.1	TGTAACAACCATTACC
Cyanothece sp. ATCC 51142	cce_0624	-47	4.7	TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801	PCC8801_3485	-117	4.6	TGTAACCATAGCTACT
		-92	3.8	CGTAATTGGTTTTACA

Position: -232 Score: 4.3 Sequence: AGTAATCAAGGCTACA Locus tag: cce_0875
	cce_0875	-232	4.3	AGTAATCAAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803	slr0653	-246	3.9	TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142	cce_0875	-232	4.3	AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801	PCC8801_0154	-257	4.4	TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843	MAE_54470	-126	4.9	TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101	Tery_5068	-199	4	TGTAAAATTTTGTACC
		-46	3.7	TGTAAAATAATTTATT

Position: -245 Score: 3 Sequence: AATATCTTTCATAACT Position: -52 Score: 3.8 Sequence: TGCAACAAAAATTACC Locus tag: cce_0953
	cce_0953	-245	3	AATATCTTTCATAACT
		-52	3.8	TGCAACAAAAATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -204 Score: 4.8 Sequence: TGTAAAATTTAATACA Locus tag: cce_1063
	cce_1063	-204	4.8	TGTAAAATTTAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142	cce_1063	-204	4.8	TGTAAAATTTAATACA
		-159	3.8	GGTAATAATTAATAGA
Cyanothece sp. PCC 8801	PCC8801_3212	-127	4.3	TGTAACAACAATAACA
Trichodesmium erythraeum IMS101	Tery_3369	-188	4.3	AGTATCAAAAATAACA

Position: -76 Score: 4.7 Sequence: TGTTACATTAGCTACA Locus tag: cce_1223
	cce_1223	-76	4.7	TGTTACATTAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -76 Score: 4.3 Sequence: CGTAGCCGATGTTACA Locus tag: cce_1808
	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Synechocystis sp. PCC 6803	sll1330	-75	4.6	GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801	PCC8801_3375	-76	4.5	CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120	all4312	-75	4.5	AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_0675	-89	4.7	AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1	tlr1330	-138	4	AGTATTATTCGTTACG

Position: -177 Score: 3.8 Sequence: TGTGATAAGAAATACA Locus tag: cce_1944
	cce_1944	-177	3.8	TGTGATAAGAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142	cce_1944	-177	3.8	TGTGATAAGAAATACA
Cyanothece sp. PCC 8801	PCC8801_0807	-251	4	TGTATACCATGATACG
Cyanothece sp. PCC 7425	Cyan7425_1838	-281	4.9	TGTATCATGAGTTACA
Nostoc sp. PCC 7120	all2327	-233	4.8	TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942	Synpcc7942_2158	-214	4.8	TGTAACAGCTGATACA

Position: -332 Score: 3.7 Sequence: AATAGCTATAATTACT Position: -229 Score: 3.7 Sequence: AATATTAAAGATTACA Position: -168 Score: 3.7 Sequence: AGTATCTATAGTTATG Locus tag: cce_2390
	cce_2390	-332	3.7	AATAGCTATAATTACT
		-229	3.7	AATATTAAAGATTACA
		-168	3.7	AGTATCTATAGTTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxQ
Ortholog function: Thioredoxin
Cyanothece sp. ATCC 51142	cce_2390	-332	3.7	AATAGCTATAATTACT

Position: -144 Score: 5.2 Sequence: TGTAACAATAGATACA Locus tag: cce_2638
	cce_2638	-144	5.2	TGTAACAATAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Cyanothece sp. ATCC 51142	cce_2638	-144	5.2	TGTAACAATAGATACA

Position: -157 Score: 3.8 Sequence: TCTAAAATTTGTAACA Position: -148 Score: 4 Sequence: TGTAACATATGATAAC Position: -87 Score: 4.6 Sequence: TGTAATATTGATTACA Locus tag: cce_2729
	cce_2729	-157	3.8	TCTAAAATTTGTAACA
		-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Position: -151 Score: 3.5 Sequence: TGTTAAGGTTGTAACA Locus tag: cce_3261
	cce_3261	-151	3.5	TGTTAAGGTTGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: -210 Score: 4.7 Sequence: TGTAGTCATAGTTACA Position: -46 Score: 4 Sequence: TTTATTTTCTGTTACA Locus tag: cce_3327
	cce_3327	-210	4.7	TGTAGTCATAGTTACA
		-46	4	TTTATTTTCTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002	SYNPCC7002_A1954	-243	4.7	TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803	slr1147	-214	4.7	TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142	cce_3327	-210	4.7	TGTAGTCATAGTTACA
		-46	4	TTTATTTTCTGTTACA
Synechococcus sp. WH 8102	SYNW0246	-143	4.1	TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1	tlr0195	-111	4.2	TGTAACCTATCTTACA

Position: -20 Score: 4.2 Sequence: TGTAACTGTATTAACA Locus tag: cce_3633
	cce_3633	-20	4.2	TGTAACTGTATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142	cce_3633	-20	4.2	TGTAACTGTATTAACA
Nostoc sp. PCC 7120	all1258	-161	3.4	TGTTACAAAAATTAGG

Position: -70 Score: 4.9 Sequence: TGTAGCTTAATATACA Locus tag: cce_3797
	cce_3797	-70	4.9	TGTAGCTTAATATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142	cce_3797	-70	4.9	TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142	cce_3797	-70	4.9	TGTAGCTTAATATACA
Cyanothece sp. PCC 8801	PCC8801_3848	-165	5.1	TGTAACTTTAGATACA
Cyanothece sp. PCC 8801	PCC8801_3848	-165	5.1	TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_1845	-27	4.3	TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942	Synpcc7942_1845	-27	4.3	TGTATCCGTTGCTACC

Position: -172 Score: 4.7 Sequence: TGTTACAATAGCTACA Locus tag: cce_4355
	cce_4355	-172	4.7	TGTTACAATAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0077
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0077	-97	4.2	AGTATTGAAATATACA
Cyanothece sp. ATCC 51142	cce_4355	-172	4.7	TGTTACAATAGCTACA

Position: -123 Score: 3.9 Sequence: TTTAGTATTATTTACA Position: -89 Score: 4.5 Sequence: AGTATCCAATTATACA Position: -30 Score: 4 Sequence: TGTATATATTGAAACC Locus tag: cce_4432
	cce_4432	-123	3.9	TTTAGTATTATTTACA
		-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. ATCC 51142

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --