Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Prochlorococcus marinus sp. MIT9215

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus sp. MIT9215
Orthologous TF(s) MIT9215_1129
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus sp. MIT9215
Locus tag Position Score Sequence
Position: -162
Score: 3.6
Sequence: GAGTATTTTAACTC
Locus tag: MIT9215_676
MIT9215_676 -162 3.6 GAGTATTTTAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -121
Score: 3.7
Sequence: AAGTATTTAAACAT
Locus tag: MIT9215_674
MIT9215_674 -121 3.7 AAGTATTTAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase subunit N
Cyanothece sp. ATCC 51142 cce_4534 -365 4.9 AAGTAAGTTTACCT
Cyanothece sp. PCC 8801 PCC8801_0789 -357 4.7 AAGCAACTTTACCT
Nostoc sp. PCC 7120 all5076 -7 3.7 AAGCAAAATGACCA
Synechocystis sp. PCC 6803 slr0750 -242 3.5 AATTAAAATTAATC
Position: -40
Score: 3.5
Sequence: AACTAAATATAGTA
Position: 16
Score: 3.4
Sequence: AAACAAATTTAGCT
Locus tag: MIT9215_440
MIT9215_440 -40 3.5 AACTAAATATAGTA
16 3.4 AAACAAATTTAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpe
Ortholog function: Ribulose-phosphate 3-epimerase
Cyanothece sp. PCC 7425 Cyan7425_1996 -14 3.9 GAGGAACTTTACCT
Cyanothece sp. PCC 8801 PCC8801_1619 -275 3.6 AAGCAGCTATTCTG
Nostoc sp. PCC 7120 alr0782 -263 4.2 AAGCATCAATACCG
Synechococcus sp. JA-3-3Ab CYA_0084 -109 3.5 AACCATATTTTCTC
Synechocystis sp. PCC 6803 sll0807 -27 3.5 GAGTTGAAATACTT
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