Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcmR regulog to Synechococcus sp. CC9605

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. CC9605
Orthologous TF(s) No orthologous TFs found
Regulated genes 1
Built upon 72 sites [see more]
Predicted regulatory interactions in Synechococcus sp. CC9605
Locus tag Position Score Sequence
Position: 21
Score: 3.9
Sequence: ACAGACTCAAGTCTCT
Locus tag: Syncc9605_1168
Syncc9605_1168 21 3.9 ACAGACTCAAGTCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhB
Ortholog function: Na/H antiporter, subunit B
Cyanothece sp. ATCC 51142 cce_1680 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3548 -121 4.7 ATTTATAAATATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2380 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2012 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2012 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1812 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
© 2009-2020 RegPrecise