Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Synechococcus sp. BL107

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. BL107
Orthologous TF(s) BL107_05204
Regulated genes 2
Built upon 56 sites [see more]
Predicted regulatory interactions in Synechococcus sp. BL107
Locus tag Position Score Sequence
Position: -132
Score: 3.5
Sequence: AAGTATTTATCACC
Locus tag: BL107_10526
BL107_10526 -132 3.5 AAGTATTTATCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -333
Score: 3.5
Sequence: AAGAATTTATTTTT
Locus tag: BL107_10536
BL107_10536 -333 3.5 AAGAATTTATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase subunit N
Cyanothece sp. ATCC 51142 cce_4534 -365 4.9 AAGTAAGTTTACCT
Cyanothece sp. PCC 8801 PCC8801_0789 -357 4.7 AAGCAACTTTACCT
Nostoc sp. PCC 7120 all5076 -7 3.7 AAGCAAAATGACCA
Synechocystis sp. PCC 6803 slr0750 -242 3.5 AATTAAAATTAATC