Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Nodularia spumigena CCY9414

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nodularia spumigena CCY9414
Orthologous TF(s) N9414_19492
Regulated genes 32
Built upon 228 sites [see more]
Predicted regulatory interactions in Nodularia spumigena CCY9414
Locus tag Position Score Sequence
Position: -172
Score: 3.3
Sequence: TGTAACTAAATGTTCG
Locus tag: N9414_20645
N9414_20645 -172 3.3 TGTAACTAAATGTTCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: -126
Score: 4.7
Sequence: AGTAACAAAGGCTACA
Locus tag: N9414_17248
N9414_17248 -126 4.7 AGTAACAAAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -106
Score: 3.7
Sequence: CGTATAGCAAACTACA
Position: 21
Score: 4.1
Sequence: TCTATCAATTACTACT
Locus tag: N9414_21811
N9414_21811 -106 3.7 CGTATAGCAAACTACA
21 4.1 TCTATCAATTACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
Position: -25
Score: 3.7
Sequence: TTTAGCAACAAATACT
Locus tag: N9414_11549
N9414_11549 -25 3.7 TTTAGCAACAAATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Iron-stress chlorophyll-binding protein
Nostoc sp. PCC 7120 all4001 -37 3.7 AGTATTTCTGGCAACA
Trichodesmium erythraeum IMS101 Tery_1667 -134 3.6 AGTAATTGATCATACT
Thermosynechococcus elongatus BP-1 null -195 3.8 AGTTTCTGGAAATACA
Position: -234
Score: 4.9
Sequence: TGTAGTTATAGCTACA
Locus tag: N9414_00760
N9414_00760 -234 4.9 TGTAGTTATAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -213
Score: 4.2
Sequence: AGTATAAAAAAATACT
Locus tag: N9414_10073
N9414_10073 -213 4.2 AGTATAAAAAAATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: -88
Score: 3.9
Sequence: GGTAGTCGGAGTTACA
Locus tag: N9414_10188
N9414_10188 -88 3.9 GGTAGTCGGAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -221
Score: 4.3
Sequence: AGTTACAAAAATTACA
Locus tag: N9414_06139
N9414_06139 -221 4.3 AGTTACAAAAATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -242
Score: 4.6
Sequence: TGTACTTTTTGCTACA
Locus tag: N9414_03583
N9414_03583 -242 4.6 TGTACTTTTTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -292
Score: 3.5
Sequence: TGTATTTTATTTAAAA
Position: -145
Score: 4.6
Sequence: TGTAGCAAAAAGTACA
Position: -7
Score: 3.4
Sequence: AGTAACAATGACGACT
Locus tag: N9414_03588
N9414_03588 -292 3.5 TGTATTTTATTTAAAA
-145 4.6 TGTAGCAAAAAGTACA
-7 3.4 AGTAACAATGACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -92
Score: 5.1
Sequence: TGTAACTTTAGCTACA
Locus tag: N9414_03593
N9414_03593 -92 5.1 TGTAACTTTAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Nostoc sp. PCC 7120 asl2329 -78 4.7 CGTAGCATAAGATACA
Position: -34
Score: 3.6
Sequence: GCTAATTTGTGCTACA
Locus tag: N9414_15622
N9414_15622 -34 3.6 GCTAATTTGTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF
Ortholog function: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Synechocystis sp. PCC 6803 sll1732 -244 4 TGTAACAAATAACACT
Cyanothece sp. PCC 8801 PCC8801_4247 -238 3.6 CGTATTATGAGTTAGA
Nostoc sp. PCC 7120 alr4156 -260 4 TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1 null -220 3.6 GGTAACTTTTGCTATG
Position: -121
Score: 3
Sequence: CATAACTAATATTAAA
Position: -117
Score: 3.2
Sequence: ACTAATATTAAATAGA
Position: -107
Score: 3.1
Sequence: AATAGATAGAAATACC
Position: -54
Score: 3.1
Sequence: TATATTTAATTTTATT
Locus tag: N9414_15637
N9414_15637 -121 3 CATAACTAATATTAAA
-117 3.2 ACTAATATTAAATAGA
-107 3.1 AATAGATAGAAATACC
-54 3.1 TATATTTAATTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -49
Score: 4.2
Sequence: CGTATCTGTCGATACA
Locus tag: N9414_03688
N9414_03688 -49 4.2 CGTATCTGTCGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
Microcystis aeruginosa NIES-843 MAE_18580 -68 4.8 TGTATCTTTAGCTACT
Nostoc sp. PCC 7120 all1327 -52 4.3 CGTAGTGTATGTTACA
Position: -79
Score: 4.2
Sequence: TGTAACCAACTTTACT
Position: -21
Score: 4.5
Sequence: TGTAATTCAGGCTACA
Locus tag: N9414_13370
N9414_13370 -79 4.2 TGTAACCAACTTTACT
-21 4.5 TGTAATTCAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -143
Score: 4.1
Sequence: TGTATCATTATGAACA
Locus tag: N9414_19492
N9414_19492 -143 4.1 TGTATCATTATGAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
© 2009-2020 RegPrecise