Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. PCC 7822

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7822
Orthologous TF(s) Cyan7822DRAFT_4473
Regulated genes 25
Built upon 228 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7822
Locus tag Position Score Sequence
Position: -220
Score: 4.3
Sequence: TGTAAACGAGGCTACA
Locus tag: Cyan7822DRAFT_0037
Cyan7822DRAFT_0037 -220 4.3 TGTAAACGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
Position: -77
Score: 4.4
Sequence: CGTAGCGAATGTTACA
Locus tag: Cyan7822DRAFT_0074
Cyan7822DRAFT_0074 -77 4.4 CGTAGCGAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -206
Score: 4.5
Sequence: TGTAATCATCGTTACA
Locus tag: Cyan7822DRAFT_0244
Cyan7822DRAFT_0244 -206 4.5 TGTAATCATCGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -75
Score: 4.5
Sequence: TGTAACTGTTACTACT
Locus tag: Cyan7822DRAFT_0415
Cyan7822DRAFT_0415 -75 4.5 TGTAACTGTTACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803 slr0851 -72 4.1 TGTAACAACCATTACC
Cyanothece sp. ATCC 51142 cce_0624 -47 4.7 TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801 PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
-92 3.8 CGTAATTGGTTTTACA
Position: -139
Score: 4.8
Sequence: TGTAGCTAATGCTACT
Position: -77
Score: 4.2
Sequence: TGTAACAAATAATAAA
Locus tag: Cyan7822DRAFT_0939
Cyan7822DRAFT_0939 -139 4.8 TGTAGCTAATGCTACT
-77 4.2 TGTAACAAATAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142 cce_1063 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3369 -188 4.3 AGTATCAAAAATAACA
Position: -244
Score: 4.5
Sequence: AGTAATTTTAACTACA
Locus tag: Cyan7822DRAFT_1390
Cyan7822DRAFT_1390 -244 4.5 AGTAATTTTAACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -322
Score: 4
Sequence: AGTATCTGCTTATACT
Position: -37
Score: 4.2
Sequence: TGTATTTTACTTTACT
Locus tag: Cyan7822DRAFT_1560
Cyan7822DRAFT_1560 -322 4 AGTATCTGCTTATACT
-37 4.2 TGTATTTTACTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -276
Score: 3.5
Sequence: TTTACAATTATTTACA
Position: -153
Score: 4
Sequence: AGTATAAGCAGATACT
Position: -91
Score: 3.5
Sequence: TGTATTGAGTAGAACA
Locus tag: Cyan7822DRAFT_1561
Cyan7822DRAFT_1561 -276 3.5 TTTACAATTATTTACA
-153 4 AGTATAAGCAGATACT
-91 3.5 TGTATTGAGTAGAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -107
Score: 4.6
Sequence: TGTATTAAAAATTACT
Position: -75
Score: 4.9
Sequence: TGTAACTTTTGTTACT
Position: -47
Score: 4.7
Sequence: AGTATATTTTGATACA
Locus tag: Cyan7822DRAFT_2580
Cyan7822DRAFT_2580 -107 4.6 TGTATTAAAAATTACT
-75 4.9 TGTAACTTTTGTTACT
-47 4.7 AGTATATTTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Position: -123
Score: 5.1
Sequence: TGTAGCTATTGTTACA
Locus tag: Cyan7822DRAFT_2933
Cyan7822DRAFT_2933 -123 5.1 TGTAGCTATTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
Microcystis aeruginosa NIES-843 MAE_18580 -68 4.8 TGTATCTTTAGCTACT
Nostoc sp. PCC 7120 all1327 -52 4.3 CGTAGTGTATGTTACA
Position: -7
Score: 3.7
Sequence: TTTAATTATGACTACA
Locus tag: Cyan7822DRAFT_3778
Cyan7822DRAFT_3778 -7 3.7 TTTAATTATGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxA
Ortholog function: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Cyanothece sp. PCC 8801 PCC8801_0568 -148 3.8 TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843 MAE_22940 -141 3.8 AGTTATTTTAAATACT
Position: -179
Score: 3.8
Sequence: TGTTGCTAAAGTTAAA
Position: -135
Score: 3.3
Sequence: TGTTAAGTTAGTTAAA
Position: -121
Score: 3.5
Sequence: AATTTATAAAGTTACA
Locus tag: Cyan7822DRAFT_4270
Cyan7822DRAFT_4270 -179 3.8 TGTTGCTAAAGTTAAA
-135 3.3 TGTTAAGTTAGTTAAA
-121 3.5 AATTTATAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -144
Score: 4.7
Sequence: TGTAATTAACGATACA
Locus tag: Cyan7822DRAFT_4543
Cyan7822DRAFT_4543 -144 4.7 TGTAATTAACGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
Synechocystis sp. PCC 6803 ssr1562 -78 4.5 TGTAATCGATAATACA
Cyanothece sp. ATCC 51142 cce_0537 -137 4 TGTAAACTATGATATA
-93 4.8 TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801 PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843 MAE_39690 -99 4.3 TGTAATCGTCGATACA
Position: -206
Score: 4.2
Sequence: AGTATGATTTGTTACA
Position: -134
Score: 3.5
Sequence: TGTAACAAAGCATAGA
Locus tag: Cyan7822DRAFT_4819
Cyan7822DRAFT_4819 -206 4.2 AGTATGATTTGTTACA
-134 3.5 TGTAACAAAGCATAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -86
Score: 4.4
Sequence: TGTATCAAGATCTACT
Locus tag: Cyan7822DRAFT_4828
Cyan7822DRAFT_4828 -86 4.4 TGTATCAAGATCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -249
Score: 4.7
Sequence: CGTATCTTTTGTTACA
Position: -119
Score: 4.5
Sequence: TGTTACAAAAACTACA
Locus tag: Cyan7822DRAFT_4837
Cyan7822DRAFT_4837 -249 4.7 CGTATCTTTTGTTACA
-119 4.5 TGTTACAAAAACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -96 3.9 AGTTACAAACTATACA
Cyanothece sp. PCC 8801 PCC8801_4396 -184 4.6 TGTAGCAAATAATACG
-106 3.9 AGTATTTATAGACACA
Cyanothece sp. PCC 7425 Cyan7425_4572 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_14800 -177 4.2 TGTAACAATCTATACG
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0613 -72 3.9 TGTAACTGCCAATACC
Thermosynechococcus elongatus BP-1 tlr1350 -82 4.6 AGTAGCAAAATTTACA
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