Propagation of NtcA regulog to Cyanothece sp. PCC 7822
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 7822 |
| Orthologous TF(s) | Cyan7822DRAFT_4473 |
| Regulated genes | 25 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -220
Score: 4.3 Sequence: TGTAAACGAGGCTACA
Locus tag: Cyan7822DRAFT_0037
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| Cyan7822DRAFT_0037 | -220 | 4.3 | TGTAAACGAGGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpoD | ||||
| Ortholog function: RNA polymerase sigma 70 factor | ||||
| Synechocystis sp. PCC 6803 | slr0653 | -246 | 3.9 | TGTTATCGAGGCTACA |
| Cyanothece sp. ATCC 51142 | cce_0875 | -232 | 4.3 | AGTAATCAAGGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_0154 | -257 | 4.4 | TGTAATCGAGGCTACA |
| Microcystis aeruginosa NIES-843 | MAE_54470 | -126 | 4.9 | TGTAATTAAAGCTACA |
| Trichodesmium erythraeum IMS101 | Tery_5068 | -199 | 4 | TGTAAAATTTTGTACC |
| -46 | 3.7 | TGTAAAATAATTTATT | ||
|
Position: -77
Score: 4.4 Sequence: CGTAGCGAATGTTACA
Locus tag: Cyan7822DRAFT_0074
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| Cyan7822DRAFT_0074 | -77 | 4.4 | CGTAGCGAATGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrrA | ||||
| Ortholog function: Transcriptional regulator, OmpR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0496 | -75 | 4.1 | CGTAACCACGGTTACA |
| Synechocystis sp. PCC 6803 | sll1330 | -75 | 4.6 | GGTAACTGTTGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1808 | -76 | 4.3 | CGTAGCCGATGTTACA |
| Cyanothece sp. PCC 8801 | PCC8801_3375 | -76 | 4.5 | CGTAGCAGATGTTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG |
| Nostoc sp. PCC 7120 | all4312 | -75 | 4.5 | AGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_0675 | -89 | 4.7 | AGTAGCTTCTGTTACA |
| Thermosynechococcus elongatus BP-1 | tlr1330 | -138 | 4 | AGTATTATTCGTTACG |
|
Position: -206
Score: 4.5 Sequence: TGTAATCATCGTTACA
Locus tag: Cyan7822DRAFT_0244
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| Cyan7822DRAFT_0244 | -206 | 4.5 | TGTAATCATCGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A1954 | ||||
| Ortholog function: putative two-component sensor histidine kinase | ||||
| Cyanothece sp. PCC 8801 | PCC8801_3053 | -198 | 4.8 | TGTAATCATAGTTACA |
| Microcystis aeruginosa NIES-843 | MAE_14410 | -75 | 3.7 | TGTAAACTGGGAAACA |
| Nostoc sp. PCC 7120 | alr3982 | -250 | 4.6 | TGTAGTGATAGCTACA |
| Trichodesmium erythraeum IMS101 | Tery_3912 | -156 | 4.3 | TGTAGTTATGGCTACC |
|
Position: -75
Score: 4.5 Sequence: TGTAACTGTTACTACT
Locus tag: Cyan7822DRAFT_0415
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| Cyan7822DRAFT_0415 | -75 | 4.5 | TGTAACTGTTACTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase, type II | ||||
| Synechocystis sp. PCC 6803 | slr0851 | -72 | 4.1 | TGTAACAACCATTACC |
| Cyanothece sp. ATCC 51142 | cce_0624 | -47 | 4.7 | TGTAACTGTAGTTACT |
| Cyanothece sp. PCC 8801 | PCC8801_3485 | -117 | 4.6 | TGTAACCATAGCTACT |
| -92 | 3.8 | CGTAATTGGTTTTACA | ||
|
Position: -139
Score: 4.8 Sequence: TGTAGCTAATGCTACT
Position: -77
Score: 4.2 Sequence: TGTAACAAATAATAAA
Locus tag: Cyan7822DRAFT_0939
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| Cyan7822DRAFT_0939 | -139 | 4.8 | TGTAGCTAATGCTACT | |
| -77 | 4.2 | TGTAACAAATAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupS | ||||
| Ortholog function: NiFe uptake hydrogenase, small subunit | ||||
| Cyanothece sp. ATCC 51142 | cce_1063 | -204 | 4.8 | TGTAAAATTTAATACA |
| -159 | 3.8 | GGTAATAATTAATAGA | ||
| Cyanothece sp. PCC 8801 | PCC8801_3212 | -127 | 4.3 | TGTAACAACAATAACA |
| Trichodesmium erythraeum IMS101 | Tery_3369 | -188 | 4.3 | AGTATCAAAAATAACA |
|
Position: -244
Score: 4.5 Sequence: AGTAATTTTAACTACA
Locus tag: Cyan7822DRAFT_1390
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| Cyan7822DRAFT_1390 | -244 | 4.5 | AGTAATTTTAACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -322
Score: 4 Sequence: AGTATCTGCTTATACT
Position: -37
Score: 4.2 Sequence: TGTATTTTACTTTACT
Locus tag: Cyan7822DRAFT_1560
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| Cyan7822DRAFT_1560 | -322 | 4 | AGTATCTGCTTATACT | |
| -37 | 4.2 | TGTATTTTACTTTACT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcF | ||||
| Ortholog function: phycobilisome core component | ||||
| Cyanothece sp. ATCC 51142 | cce_1944 | -177 | 3.8 | TGTGATAAGAAATACA |
| Cyanothece sp. PCC 8801 | PCC8801_0807 | -251 | 4 | TGTATACCATGATACG |
| Cyanothece sp. PCC 7425 | Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA |
| Nostoc sp. PCC 7120 | all2327 | -233 | 4.8 | TGTAGTCTTTGTTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2158 | -214 | 4.8 | TGTAACAGCTGATACA |
|
Position: -276
Score: 3.5 Sequence: TTTACAATTATTTACA
Position: -153
Score: 4 Sequence: AGTATAAGCAGATACT
Position: -91
Score: 3.5 Sequence: TGTATTGAGTAGAACA
Locus tag: Cyan7822DRAFT_1561
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| Cyan7822DRAFT_1561 | -276 | 3.5 | TTTACAATTATTTACA | |
| -153 | 4 | AGTATAAGCAGATACT | ||
| -91 | 3.5 | TGTATTGAGTAGAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -107
Score: 4.6 Sequence: TGTATTAAAAATTACT
Position: -75
Score: 4.9 Sequence: TGTAACTTTTGTTACT
Position: -47
Score: 4.7 Sequence: AGTATATTTTGATACA
Locus tag: Cyan7822DRAFT_2580
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| Cyan7822DRAFT_2580 | -107 | 4.6 | TGTATTAAAAATTACT | |
| -75 | 4.9 | TGTAACTTTTGTTACT | ||
| -47 | 4.7 | AGTATATTTTGATACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cce_3797 | ||||
| Ortholog function: conserved hypothetical protein | ||||
| Cyanothece sp. ATCC 51142 | cce_3797 | -70 | 4.9 | TGTAGCTTAATATACA |
| Cyanothece sp. ATCC 51142 | cce_3797 | -70 | 4.9 | TGTAGCTTAATATACA |
| Cyanothece sp. PCC 8801 | PCC8801_3848 | -165 | 5.1 | TGTAACTTTAGATACA |
| Cyanothece sp. PCC 8801 | PCC8801_3848 | -165 | 5.1 | TGTAACTTTAGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1845 | -27 | 4.3 | TGTATCCGTTGCTACC |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1845 | -27 | 4.3 | TGTATCCGTTGCTACC |
|
Position: -123
Score: 5.1 Sequence: TGTAGCTATTGTTACA
Locus tag: Cyan7822DRAFT_2933
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| Cyan7822DRAFT_2933 | -123 | 5.1 | TGTAGCTATTGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0264 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0264 | -29 | 5 | TGTATCAAATACTACA |
| Microcystis aeruginosa NIES-843 | MAE_18580 | -68 | 4.8 | TGTATCTTTAGCTACT |
| Nostoc sp. PCC 7120 | all1327 | -52 | 4.3 | CGTAGTGTATGTTACA |
|
Position: -7
Score: 3.7 Sequence: TTTAATTATGACTACA
Locus tag: Cyan7822DRAFT_3778
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| Cyan7822DRAFT_3778 | -7 | 3.7 | TTTAATTATGACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxA | ||||
| Ortholog function: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) | ||||
| Cyanothece sp. PCC 8801 | PCC8801_0568 | -148 | 3.8 | TTTATTATTTGTTACC |
| Microcystis aeruginosa NIES-843 | MAE_22940 | -141 | 3.8 | AGTTATTTTAAATACT |
|
Position: -179
Score: 3.8 Sequence: TGTTGCTAAAGTTAAA
Position: -135
Score: 3.3 Sequence: TGTTAAGTTAGTTAAA
Position: -121
Score: 3.5 Sequence: AATTTATAAAGTTACA
Locus tag: Cyan7822DRAFT_4270
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| Cyan7822DRAFT_4270 | -179 | 3.8 | TGTTGCTAAAGTTAAA | |
| -135 | 3.3 | TGTTAAGTTAGTTAAA | ||
| -121 | 3.5 | AATTTATAAAGTTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifJ | ||||
| Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1443 | -272 | 4.1 | TTTATCATTTTCTACA |
| Synechocystis sp. PCC 6803 | sll0741 | -181 | 3.3 | AGAATCAACAAAAACA |
| Cyanothece sp. ATCC 51142 | cce_0953 | -52 | 3.8 | TGCAACAAAAATTACC |
| Cyanothece sp. PCC 8801 | PCC8801_3918 | -265 | 3.5 | AGTAACCATAATTATT |
| Cyanothece sp. PCC 7425 | Cyan7425_4369 | -120 | 3.1 | TCTAACGTATTCTCCA |
| Nostoc sp. PCC 7120 | alr1911 | -281 | 3.2 | TGAATTTGATGTAACC |
|
Position: -144
Score: 4.7 Sequence: TGTAATTAACGATACA
Locus tag: Cyan7822DRAFT_4543
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| Cyan7822DRAFT_4543 | -144 | 4.7 | TGTAATTAACGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0076 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0076 | -97 | 4.2 | AGTATTGAAATATACA |
| Synechocystis sp. PCC 6803 | ssr1562 | -78 | 4.5 | TGTAATCGATAATACA |
| Cyanothece sp. ATCC 51142 | cce_0537 | -137 | 4 | TGTAAACTATGATATA |
| -93 | 4.8 | TGTAGTCTTTGTTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_3101 | -95 | 4.6 | TGTATTGGTTGTTACA |
| Microcystis aeruginosa NIES-843 | MAE_39690 | -99 | 4.3 | TGTAATCGTCGATACA |
|
Position: -206
Score: 4.2 Sequence: AGTATGATTTGTTACA
Position: -134
Score: 3.5 Sequence: TGTAACAAAGCATAGA
Locus tag: Cyan7822DRAFT_4819
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| Cyan7822DRAFT_4819 | -206 | 4.2 | AGTATGATTTGTTACA | |
| -134 | 3.5 | TGTAACAAAGCATAGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |
|
Position: -86
Score: 4.4 Sequence: TGTATCAAGATCTACT
Locus tag: Cyan7822DRAFT_4828
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| Cyan7822DRAFT_4828 | -86 | 4.4 | TGTATCAAGATCTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -249
Score: 4.7 Sequence: CGTATCTTTTGTTACA
Position: -119
Score: 4.5 Sequence: TGTTACAAAAACTACA
Locus tag: Cyan7822DRAFT_4837
|
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| Cyan7822DRAFT_4837 | -249 | 4.7 | CGTATCTTTTGTTACA | |
| -119 | 4.5 | TGTTACAAAAACTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrtA | ||||
| Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein | ||||
| Synechocystis sp. PCC 6803 | sll1450 | -96 | 3.9 | AGTTACAAACTATACA |
| Cyanothece sp. PCC 8801 | PCC8801_4396 | -184 | 4.6 | TGTAGCAAATAATACG |
| -106 | 3.9 | AGTATTTATAGACACA | ||
| Cyanothece sp. PCC 7425 | Cyan7425_4572 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_14800 | -177 | 4.2 | TGTAACAATCTATACG |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1239 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0613 | -72 | 3.9 | TGTAACTGCCAATACC |
| Thermosynechococcus elongatus BP-1 | tlr1350 | -82 | 4.6 | AGTAGCAAAATTTACA |