Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. PCC 7002
Orthologous TF(s) SYNPCC7002_A0641
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Synechococcus sp. PCC 7002
Locus tag Position Score Sequence
Position: -217
Score: 5
Sequence: AAGTAATTATACCC
Locus tag: SYNPCC7002_A1219
SYNPCC7002_A1219 -217 5 AAGTAATTATACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1957
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_2950 -166 4.5 AAGCATATCTACTT
Cyanothece sp. PCC 7425 Cyan7425_3849 -86 5.1 AAGTATTTATACCT
Cyanothece sp. PCC 8801 PCC8801_3714 -148 4.5 AAGCAAGATTACCT
Nostoc sp. PCC 7120 all2740 -157 4.3 AAGCATGAATACTA
Synechococcus sp. PCC 7002 SYNPCC7002_A1219 -217 5 AAGTAATTATACCC
Synechocystis sp. PCC 6803 slr1957 -18 4.8 AAGCATAAATACCT
Position: -14
Score: 4.6
Sequence: GAGTAAAAATACCT
Locus tag: SYNPCC7002_A1652
SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
Position: -20
Score: 4.5
Sequence: AAGTATTTTTTCCT
Locus tag: SYNPCC7002_A1973
SYNPCC7002_A1973 -20 4.5 AAGTATTTTTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NADH dehydrogenase subunit
Cyanothece sp. ATCC 51142 cce_3522 -19 4.2 GAGTATTTATTCCT
Synechococcus sp. PCC 7002 SYNPCC7002_A1973 -20 4.5 AAGTATTTTTTCCT
© 2009-2020 RegPrecise