Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Prochlorococcus marinus sp. MED4

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus sp. MED4
Orthologous TF(s) PMM0154
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus sp. MED4
Locus tag Position Score Sequence
Position: -162
Score: 3.8
Sequence: GAGTATTTTCACTC
Locus tag: PMM0543
PMM0543 -162 3.8 GAGTATTTTCACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -118
Score: 3.8
Sequence: AAGTTTTTAAACTT
Locus tag: PMM0545
PMM0545 -118 3.8 AAGTTTTTAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase subunit N
Cyanothece sp. ATCC 51142 cce_4534 -365 4.9 AAGTAAGTTTACCT
Cyanothece sp. PCC 8801 PCC8801_0789 -357 4.7 AAGCAACTTTACCT
Nostoc sp. PCC 7120 all5076 -7 3.7 AAGCAAAATGACCA
Synechocystis sp. PCC 6803 slr0750 -242 3.5 AATTAAAATTAATC