Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. CCY 0110

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. CCY 0110
Orthologous TF(s) CY0110_23036
Regulated genes 32
Built upon 228 sites [see more]
Predicted regulatory interactions in Cyanothece sp. CCY 0110
Locus tag Position Score Sequence
Position: -131
Score: 3.7
Sequence: AGTATCTTTGATGACA
Locus tag: CY0110_09832
CY0110_09832 -131 3.7 AGTATCTTTGATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxQ
Ortholog function: Thioredoxin
Cyanothece sp. ATCC 51142 cce_2390 -332 3.7 AATAGCTATAATTACT
Position: -87
Score: 4.6
Sequence: TGTAATATTGATTACA
Locus tag: CY0110_15522
CY0110_15522 -87 4.6 TGTAATATTGATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -93
Score: 4.8
Sequence: TGTATTCTTTGTTACA
Locus tag: CY0110_03279
CY0110_03279 -93 4.8 TGTATTCTTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
Synechocystis sp. PCC 6803 ssr1562 -78 4.5 TGTAATCGATAATACA
Cyanothece sp. ATCC 51142 cce_0537 -137 4 TGTAAACTATGATATA
-93 4.8 TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801 PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843 MAE_39690 -99 4.3 TGTAATCGTCGATACA
Position: -91
Score: 3.5
Sequence: GGTAAAAGTTGCAACC
Locus tag: CY0110_03374
CY0110_03374 -91 3.5 GGTAAAAGTTGCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. PCC 8801 PCC8801_0569 -148 3.8 TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843 MAE_22950 -141 3.8 AGTTATTTTAAATACT
Nostoc sp. PCC 7120 alr2516 -291 3.5 AGAAGTAGAAGCTACT
Position: -76
Score: 4.7
Sequence: TGTTACATTAGCTACA
Locus tag: CY0110_23451
CY0110_23451 -76 4.7 TGTTACATTAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -176
Score: 3.8
Sequence: TGTGATAAGAAATACA
Locus tag: CY0110_24111
CY0110_24111 -176 3.8 TGTGATAAGAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -330
Score: 4.1
Sequence: TGTAACTATTTATAAA
Locus tag: CY0110_00450
CY0110_00450 -330 4.1 TGTAACTATTTATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: -204
Score: 4.6
Sequence: TGTAAATTCTAATACA
Locus tag: CY0110_26288
CY0110_26288 -204 4.6 TGTAAATTCTAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142 cce_1063 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3369 -188 4.3 AGTATCAAAAATAACA
Position: -37
Score: 4.9
Sequence: TGTAGCTTAATATACA
Locus tag: CY0110_11752
CY0110_11752 -37 4.9 TGTAGCTTAATATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Position: -97
Score: 5.2
Sequence: TGTAGCAAATGTTACA
Locus tag: CY0110_12762
CY0110_12762 -97 5.2 TGTAGCAAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Cyanothece sp. ATCC 51142 cce_0259 -95 5.2 TGTAGCAAATGTTACA
Position: -157
Score: 4.4
Sequence: GGTAATCATTGATACA
Locus tag: CY0110_27555
CY0110_27555 -157 4.4 GGTAATCATTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbA3
Ortholog function: Photosystem II D1 protein
Cyanothece sp. ATCC 51142 cce_0267 -58 4.4 GGTAATCATTGATACA
Cyanothece sp. PCC 8801 PCC8801_3216 -59 4.4 AGTAGTTATTGCTACT
Position: -74
Score: 4.2
Sequence: AGTATCAATTTCTACG
Locus tag: CY0110_21295
CY0110_21295 -74 4.2 AGTATCAATTTCTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -169
Score: 4.5
Sequence: TGTTACAATGGCTACA
Locus tag: CY0110_30261
CY0110_30261 -169 4.5 TGTTACAATGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0077
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0077 -97 4.2 AGTATTGAAATATACA
Cyanothece sp. ATCC 51142 cce_4355 -172 4.7 TGTTACAATAGCTACA
Position: -236
Score: 4
Sequence: GGTAATCGAGGCTACA
Locus tag: CY0110_28844
CY0110_28844 -236 4 GGTAATCGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
Position: -53
Score: 3.8
Sequence: TGCAACAAAAATTACC
Locus tag: CY0110_04748
CY0110_04748 -53 3.8 TGCAACAAAAATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -20
Score: 4.2
Sequence: TGTAACTGTATTAACA
Locus tag: CY0110_04883
CY0110_04883 -20 4.2 TGTAACTGTATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142 cce_3633 -20 4.2 TGTAACTGTATTAACA
Nostoc sp. PCC 7120 all1258 -161 3.4 TGTTACAAAAATTAGG
Position: -76
Score: 4.3
Sequence: CGTAGCCGATGTTACA
Locus tag: CY0110_08441
CY0110_08441 -76 4.3 CGTAGCCGATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -124
Score: 3.4
Sequence: CTTAGTATTATTTACA
Position: -90
Score: 4.7
Sequence: AGTATCAAATTATACA
Locus tag: CY0110_09196
CY0110_09196 -124 3.4 CTTAGTATTATTTACA
-90 4.7 AGTATCAAATTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: 11
Score: 3.7
Sequence: TGTACCACAAGATAAA
Locus tag: CY0110_23036
CY0110_23036 11 3.7 TGTACCACAAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -98
Score: 4.6
Sequence: TGTAACTCTAGTTACT
Locus tag: CY0110_27939
CY0110_27939 -98 4.6 TGTAACTCTAGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803 slr0851 -72 4.1 TGTAACAACCATTACC
Cyanothece sp. ATCC 51142 cce_0624 -47 4.7 TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801 PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
-92 3.8 CGTAATTGGTTTTACA
Position: -169
Score: 3.5
Sequence: TGTTAAGGTTGTAACA
Locus tag: CY0110_27218
CY0110_27218 -169 3.5 TGTTAAGGTTGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
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