Propagation of NtcA regulog to Cyanothece sp. CCY 0110
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. CCY 0110 |
| Orthologous TF(s) | CY0110_23036 |
| Regulated genes | 32 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -131
Score: 3.7 Sequence: AGTATCTTTGATGACA
Locus tag: CY0110_09832
|
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| CY0110_09832 | -131 | 3.7 | AGTATCTTTGATGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: trxQ | ||||
| Ortholog function: Thioredoxin | ||||
| Cyanothece sp. ATCC 51142 | cce_2390 | -332 | 3.7 | AATAGCTATAATTACT |
|
Position: -87
Score: 4.6 Sequence: TGTAATATTGATTACA
Locus tag: CY0110_15522
|
||||
| CY0110_15522 | -87 | 4.6 | TGTAATATTGATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2395 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA |
| -92 | 4.5 | TGTAGTAGACGTTACA | ||
| Cyanothece sp. ATCC 51142 | cce_2729 | -148 | 4 | TGTAACATATGATAAC |
| -87 | 4.6 | TGTAATATTGATTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_2066 | -53 | 4.8 | TGTAATATTAATTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT |
| Microcystis aeruginosa NIES-843 | MAE_38700 | -87 | 4.2 | TGTAATCATCTTTACA |
| Nostoc sp. PCC 7120 | alr4308 | -64 | 3.9 | GGTAGTCGGAGTTACA |
| Trichodesmium erythraeum IMS101 | Tery_0672 | -94 | 4.3 | AGTATTCAAAATTACA |
| Synechococcus sp. JA-3-3Ab | CYA_0570 | -139 | 3.9 | GGTAAGATAAAATACA |
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Thermosynechococcus elongatus BP-1 | tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA |
|
Position: -93
Score: 4.8 Sequence: TGTATTCTTTGTTACA
Locus tag: CY0110_03279
|
||||
| CY0110_03279 | -93 | 4.8 | TGTATTCTTTGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0076 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0076 | -97 | 4.2 | AGTATTGAAATATACA |
| Synechocystis sp. PCC 6803 | ssr1562 | -78 | 4.5 | TGTAATCGATAATACA |
| Cyanothece sp. ATCC 51142 | cce_0537 | -137 | 4 | TGTAAACTATGATATA |
| -93 | 4.8 | TGTAGTCTTTGTTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_3101 | -95 | 4.6 | TGTATTGGTTGTTACA |
| Microcystis aeruginosa NIES-843 | MAE_39690 | -99 | 4.3 | TGTAATCGTCGATACA |
|
Position: -91
Score: 3.5 Sequence: GGTAAAAGTTGCAACC
Locus tag: CY0110_03374
|
||||
| CY0110_03374 | -91 | 3.5 | GGTAAAAGTTGCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxC | ||||
| Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) | ||||
| Cyanothece sp. PCC 8801 | PCC8801_0569 | -148 | 3.8 | TTTATTATTTGTTACC |
| Microcystis aeruginosa NIES-843 | MAE_22950 | -141 | 3.8 | AGTTATTTTAAATACT |
| Nostoc sp. PCC 7120 | alr2516 | -291 | 3.5 | AGAAGTAGAAGCTACT |
|
Position: -76
Score: 4.7 Sequence: TGTTACATTAGCTACA
Locus tag: CY0110_23451
|
||||
| CY0110_23451 | -76 | 4.7 | TGTTACATTAGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -176
Score: 3.8 Sequence: TGTGATAAGAAATACA
Locus tag: CY0110_24111
|
||||
| CY0110_24111 | -176 | 3.8 | TGTGATAAGAAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcF | ||||
| Ortholog function: phycobilisome core component | ||||
| Cyanothece sp. ATCC 51142 | cce_1944 | -177 | 3.8 | TGTGATAAGAAATACA |
| Cyanothece sp. PCC 8801 | PCC8801_0807 | -251 | 4 | TGTATACCATGATACG |
| Cyanothece sp. PCC 7425 | Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA |
| Nostoc sp. PCC 7120 | all2327 | -233 | 4.8 | TGTAGTCTTTGTTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2158 | -214 | 4.8 | TGTAACAGCTGATACA |
|
Position: -330
Score: 4.1 Sequence: TGTAACTATTTATAAA
Locus tag: CY0110_00450
|
||||
| CY0110_00450 | -330 | 4.1 | TGTAACTATTTATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbcL | ||||
| Ortholog function: RuBisCO large subunit (EC 4.1.1.39) | ||||
| Synechocystis sp. PCC 6803 | slr0009 | -228 | 4.3 | TGTAATTTAAAAAACA |
| Nostoc sp. PCC 7120 | alr1524 | -32 | 3.6 | AGTAAAAAGAGTGACA |
| Trichodesmium erythraeum IMS101 | Tery_4410 | -293 | 3.4 | GATAACTATTACTACG |
|
Position: -204
Score: 4.6 Sequence: TGTAAATTCTAATACA
Locus tag: CY0110_26288
|
||||
| CY0110_26288 | -204 | 4.6 | TGTAAATTCTAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupS | ||||
| Ortholog function: NiFe uptake hydrogenase, small subunit | ||||
| Cyanothece sp. ATCC 51142 | cce_1063 | -204 | 4.8 | TGTAAAATTTAATACA |
| -159 | 3.8 | GGTAATAATTAATAGA | ||
| Cyanothece sp. PCC 8801 | PCC8801_3212 | -127 | 4.3 | TGTAACAACAATAACA |
| Trichodesmium erythraeum IMS101 | Tery_3369 | -188 | 4.3 | AGTATCAAAAATAACA |
|
Position: -37
Score: 4.9 Sequence: TGTAGCTTAATATACA
Locus tag: CY0110_11752
|
||||
| CY0110_11752 | -37 | 4.9 | TGTAGCTTAATATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cce_3797 | ||||
| Ortholog function: conserved hypothetical protein | ||||
| Cyanothece sp. ATCC 51142 | cce_3797 | -70 | 4.9 | TGTAGCTTAATATACA |
| Cyanothece sp. ATCC 51142 | cce_3797 | -70 | 4.9 | TGTAGCTTAATATACA |
| Cyanothece sp. PCC 8801 | PCC8801_3848 | -165 | 5.1 | TGTAACTTTAGATACA |
| Cyanothece sp. PCC 8801 | PCC8801_3848 | -165 | 5.1 | TGTAACTTTAGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1845 | -27 | 4.3 | TGTATCCGTTGCTACC |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1845 | -27 | 4.3 | TGTATCCGTTGCTACC |
|
Position: -97
Score: 5.2 Sequence: TGTAGCAAATGTTACA
Locus tag: CY0110_12762
|
||||
| CY0110_12762 | -97 | 5.2 | TGTAGCAAATGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gifA | ||||
| Ortholog function: glutamine synthetase inactivating factor IF | ||||
| Cyanothece sp. ATCC 51142 | cce_0259 | -95 | 5.2 | TGTAGCAAATGTTACA |
|
Position: -157
Score: 4.4 Sequence: GGTAATCATTGATACA
Locus tag: CY0110_27555
|
||||
| CY0110_27555 | -157 | 4.4 | GGTAATCATTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psbA3 | ||||
| Ortholog function: Photosystem II D1 protein | ||||
| Cyanothece sp. ATCC 51142 | cce_0267 | -58 | 4.4 | GGTAATCATTGATACA |
| Cyanothece sp. PCC 8801 | PCC8801_3216 | -59 | 4.4 | AGTAGTTATTGCTACT |
|
Position: -74
Score: 4.2 Sequence: AGTATCAATTTCTACG
Locus tag: CY0110_21295
|
||||
| CY0110_21295 | -74 | 4.2 | AGTATCAATTTCTACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -169
Score: 4.5 Sequence: TGTTACAATGGCTACA
Locus tag: CY0110_30261
|
||||
| CY0110_30261 | -169 | 4.5 | TGTTACAATGGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0077 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0077 | -97 | 4.2 | AGTATTGAAATATACA |
| Cyanothece sp. ATCC 51142 | cce_4355 | -172 | 4.7 | TGTTACAATAGCTACA |
|
Position: -236
Score: 4 Sequence: GGTAATCGAGGCTACA
Locus tag: CY0110_28844
|
||||
| CY0110_28844 | -236 | 4 | GGTAATCGAGGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpoD | ||||
| Ortholog function: RNA polymerase sigma 70 factor | ||||
| Synechocystis sp. PCC 6803 | slr0653 | -246 | 3.9 | TGTTATCGAGGCTACA |
| Cyanothece sp. ATCC 51142 | cce_0875 | -232 | 4.3 | AGTAATCAAGGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_0154 | -257 | 4.4 | TGTAATCGAGGCTACA |
| Microcystis aeruginosa NIES-843 | MAE_54470 | -126 | 4.9 | TGTAATTAAAGCTACA |
| Trichodesmium erythraeum IMS101 | Tery_5068 | -199 | 4 | TGTAAAATTTTGTACC |
| -46 | 3.7 | TGTAAAATAATTTATT | ||
|
Position: -53
Score: 3.8 Sequence: TGCAACAAAAATTACC
Locus tag: CY0110_04748
|
||||
| CY0110_04748 | -53 | 3.8 | TGCAACAAAAATTACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifJ | ||||
| Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1443 | -272 | 4.1 | TTTATCATTTTCTACA |
| Synechocystis sp. PCC 6803 | sll0741 | -181 | 3.3 | AGAATCAACAAAAACA |
| Cyanothece sp. ATCC 51142 | cce_0953 | -52 | 3.8 | TGCAACAAAAATTACC |
| Cyanothece sp. PCC 8801 | PCC8801_3918 | -265 | 3.5 | AGTAACCATAATTATT |
| Cyanothece sp. PCC 7425 | Cyan7425_4369 | -120 | 3.1 | TCTAACGTATTCTCCA |
| Nostoc sp. PCC 7120 | alr1911 | -281 | 3.2 | TGAATTTGATGTAACC |
|
Position: -20
Score: 4.2 Sequence: TGTAACTGTATTAACA
Locus tag: CY0110_04883
|
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| CY0110_04883 | -20 | 4.2 | TGTAACTGTATTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psbZ | ||||
| Ortholog function: Photosystem II reaction center protein Z | ||||
| Cyanothece sp. ATCC 51142 | cce_3633 | -20 | 4.2 | TGTAACTGTATTAACA |
| Nostoc sp. PCC 7120 | all1258 | -161 | 3.4 | TGTTACAAAAATTAGG |
|
Position: -76
Score: 4.3 Sequence: CGTAGCCGATGTTACA
Locus tag: CY0110_08441
|
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| CY0110_08441 | -76 | 4.3 | CGTAGCCGATGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrrA | ||||
| Ortholog function: Transcriptional regulator, OmpR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0496 | -75 | 4.1 | CGTAACCACGGTTACA |
| Synechocystis sp. PCC 6803 | sll1330 | -75 | 4.6 | GGTAACTGTTGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1808 | -76 | 4.3 | CGTAGCCGATGTTACA |
| Cyanothece sp. PCC 8801 | PCC8801_3375 | -76 | 4.5 | CGTAGCAGATGTTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG |
| Nostoc sp. PCC 7120 | all4312 | -75 | 4.5 | AGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_0675 | -89 | 4.7 | AGTAGCTTCTGTTACA |
| Thermosynechococcus elongatus BP-1 | tlr1330 | -138 | 4 | AGTATTATTCGTTACG |
|
Position: -124
Score: 3.4 Sequence: CTTAGTATTATTTACA
Position: -90
Score: 4.7 Sequence: AGTATCAAATTATACA
Locus tag: CY0110_09196
|
||||
| CY0110_09196 | -124 | 3.4 | CTTAGTATTATTTACA | |
| -90 | 4.7 | AGTATCAAATTATACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: 11
Score: 3.7 Sequence: TGTACCACAAGATAAA
Locus tag: CY0110_23036
|
||||
| CY0110_23036 | 11 | 3.7 | TGTACCACAAGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcA | ||||
| Ortholog function: Global nitrogen transcription regulator, Crp family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1675 | -177 | 3.9 | TGAAGCAAAAAGTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA |
| Nostoc sp. PCC 7120 | alr4392 | -151 | 3.7 | GGTATCATTATGAACA |
| -111 | 3.7 | AGTATAGGAAAGTACA | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | -157 | 4.7 | AGTAGCAGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA |
| Gloeobacter violaceus PCC 7421 | gvip454 | -77 | 3.9 | AGTAGTCCCTAATACA |
|
Position: -98
Score: 4.6 Sequence: TGTAACTCTAGTTACT
Locus tag: CY0110_27939
|
||||
| CY0110_27939 | -98 | 4.6 | TGTAACTCTAGTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase, type II | ||||
| Synechocystis sp. PCC 6803 | slr0851 | -72 | 4.1 | TGTAACAACCATTACC |
| Cyanothece sp. ATCC 51142 | cce_0624 | -47 | 4.7 | TGTAACTGTAGTTACT |
| Cyanothece sp. PCC 8801 | PCC8801_3485 | -117 | 4.6 | TGTAACCATAGCTACT |
| -92 | 3.8 | CGTAATTGGTTTTACA | ||
|
Position: -169
Score: 3.5 Sequence: TGTTAAGGTTGTAACA
Locus tag: CY0110_27218
|
||||
| CY0110_27218 | -169 | 3.5 | TGTTAAGGTTGTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |