Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Nostoc sp. PCC 7120

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nostoc sp. PCC 7120
Orthologous TF(s) alr4392
Regulated genes 40
Built upon 228 sites [see more]
Predicted regulatory interactions in Nostoc sp. PCC 7120
Locus tag Position Score Sequence
Position: 17
Score: 3.7
Sequence: AGTTACAGATTCTACT
Locus tag: alr0052
alr0052 17 3.7 AGTTACAGATTCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxA
Ortholog function: Thioredoxin-1
Nostoc sp. PCC 7120 alr0052 17 3.7 AGTTACAGATTCTACT
Gloeobacter violaceus PCC 7421 gll0880 -379 3.6 TGTATCTAGAACTAGC
Position: -107
Score: 3.7
Sequence: CGTATAGCAAAATACA
Position: 21
Score: 4.1
Sequence: TCTATCAATTACTACT
Locus tag: asr0064
asr0064 -107 3.7 CGTATAGCAAAATACA
21 4.1 TCTATCAATTACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
Position: -80
Score: 4.5
Sequence: TGTAACAAAATCTACC
Position: -21
Score: 4.7
Sequence: TGTAATTAAGGCTACA
Locus tag: all0602
all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -250
Score: 4.7
Sequence: TGTATTAACTAATACA
Locus tag: alr0990
alr0990 -250 4.7 TGTATTAACTAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Nostoc sp. PCC 7120 alr0990 -250 4.7 TGTATTAACTAATACA
Position: -50
Score: 4.7
Sequence: TGTAACTAAGTATACA
Locus tag: alr0992
alr0992 -50 4.7 TGTAACTAAGTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Nostoc sp. PCC 7120 alr0992 -50 4.7 TGTAACTAAGTATACA
Position: -146
Score: 4.7
Sequence: TGTAGCTTAAATTACT
Locus tag: all1127
all1127 -146 4.7 TGTAGCTTAAATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Nostoc sp. PCC 7120 all1127 -146 4.7 TGTAGCTTAAATTACT
Position: -161
Score: 3.4
Sequence: TGTTACAAAAATTAGG
Locus tag: all1258
all1258 -161 3.4 TGTTACAAAAATTAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142 cce_3633 -20 4.2 TGTAACTGTATTAACA
Nostoc sp. PCC 7120 all1258 -161 3.4 TGTTACAAAAATTAGG
Position: -52
Score: 4.3
Sequence: CGTAGTGTATGTTACA
Locus tag: all1327
all1327 -52 4.3 CGTAGTGTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
Microcystis aeruginosa NIES-843 MAE_18580 -68 4.8 TGTATCTTTAGCTACT
Nostoc sp. PCC 7120 all1327 -52 4.3 CGTAGTGTATGTTACA
Position: -32
Score: 3.6
Sequence: AGTAAAAAGAGTGACA
Locus tag: alr1524
alr1524 -32 3.6 AGTAAAAAGAGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: 14
Score: 3.9
Sequence: AATAGCGAAAGATACA
Locus tag: alr1525
alr1525 14 3.9 AATAGCGAAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120 alr1525 -32 3.6 AGTAAAAAGAGTGACA
Position: -218
Score: 4.1
Sequence: TGTAGCTTGAGATTCA
Locus tag: all1691
all1691 -218 4.1 TGTAGCTTGAGATTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Ferric uptake regulator, Fur family
Nostoc sp. PCC 7120 all1691 -218 4.1 TGTAGCTTGAGATTCA
Position: -6
Score: 3.4
Sequence: TGAAATATGTACAACA
Locus tag: alr1827
alr1827 -6 3.4 TGAAATATGTACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -281
Score: 3.2
Sequence: TGAATTTGATGTAACC
Locus tag: alr1911
alr1911 -281 3.2 TGAATTTGATGTAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: 23
Score: 3.7
Sequence: TGTATTTAATGGTATT
Locus tag: all1950
all1950 23 3.7 TGTATTTAATGGTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtB
Ortholog function: Urea ABC transporter, permease protein 1
Synechococcus sp. PCC 7002 SYNPCC7002_A0397 -127 4.1 TGTATCAAGTGTCACA
Cyanothece sp. PCC 7425 Cyan7425_2259 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06210 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1950 -116 4.3 AGTATCAAAAATAACA
Prochlorococcus marinus str. MIT 9313 PMT2228 -146 4 TGTTGCAACAGCTACC
-95 4.7 TGTATCATTCACTACA
Synechococcus sp. JA-3-3Ab CYA_1923 -272 3.7 GGTATCCCGCGATACA
Synechococcus sp. WH 8102 SYNW2441 -118 4 TGTTGCAACAGCTACC
Thermosynechococcus elongatus BP-1 tlr1121 -81 4 TGTAGCCTAGCATACA
Position: -116
Score: 4.3
Sequence: AGTATCAAAAATAACA
Locus tag: all1951
all1951 -116 4.3 AGTATCAAAAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0398 -127 4.1 TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803 slr0447 -211 4.5 GGTATCCTATGCTACA
Cyanothece sp. PCC 7425 Cyan7425_2260 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06220 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1951 -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101 Tery_0130 -390 3.8 AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab CYA_1924 -272 3.7 GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1 tlr1120 -81 4 TGTAGCCTAGCATACA
Position: -214
Score: 3.8
Sequence: AGTTACACAGACTACA
Locus tag: all2319
all2319 -214 3.8 AGTTACACAGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -233
Score: 4.8
Sequence: TGTAGTCTTTGTTACA
Locus tag: all2327
all2327 -233 4.8 TGTAGTCTTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -142
Score: 4.8
Sequence: TGTAACAAAGACTACA
Position: -7
Score: 3.6
Sequence: AGTAACAATGACAACC
Locus tag: alr2328
alr2328 -142 4.8 TGTAACAAAGACTACA
-7 3.6 AGTAACAATGACAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -78
Score: 4.7
Sequence: CGTAGCATAAGATACA
Locus tag: asl2329
asl2329 -78 4.7 CGTAGCATAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Nostoc sp. PCC 7120 asl2329 -78 4.7 CGTAGCATAAGATACA
Position: -291
Score: 3.5
Sequence: AGAAGTAGAAGCTACT
Locus tag: alr2514
alr2514 -291 3.5 AGAAGTAGAAGCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Nostoc sp. PCC 7120 alr2514 -291 3.5 AGAAGTAGAAGCTACT
Position: -127
Score: 3.2
Sequence: TTTTATAAAAGCAACA
Locus tag: alr2803
alr2803 -127 3.2 TTTTATAAAAGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -279
Score: 3.6
Sequence: GGTATTTTTTCCTACT
Locus tag: asr3935
asr3935 -279 3.6 GGTATTTTTTCCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -250
Score: 4.6
Sequence: TGTAGTGATAGCTACA
Locus tag: alr3982
alr3982 -250 4.6 TGTAGTGATAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -178
Score: 3.5
Sequence: TGTAAAAAATAGTATT
Position: -37
Score: 3.7
Sequence: AGTATTTCTGGCAACA
Locus tag: all4001
all4001 -178 3.5 TGTAAAAAATAGTATT
-37 3.7 AGTATTTCTGGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Iron-stress chlorophyll-binding protein
Nostoc sp. PCC 7120 all4001 -37 3.7 AGTATTTCTGGCAACA
Trichodesmium erythraeum IMS101 Tery_1667 -134 3.6 AGTAATTGATCATACT
Thermosynechococcus elongatus BP-1 null -195 3.8 AGTTTCTGGAAATACA
Position: -260
Score: 4
Sequence: TGTCTTATAAAATACA
Locus tag: alr4156
alr4156 -260 4 TGTCTTATAAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF
Ortholog function: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Synechocystis sp. PCC 6803 sll1732 -244 4 TGTAACAAATAACACT
Cyanothece sp. PCC 8801 PCC8801_4247 -238 3.6 CGTATTATGAGTTAGA
Nostoc sp. PCC 7120 alr4156 -260 4 TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1 null -220 3.6 GGTAACTTTTGCTATG
Position: -64
Score: 3.9
Sequence: GGTAGTCGGAGTTACA
Locus tag: alr4308
alr4308 -64 3.9 GGTAGTCGGAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -75
Score: 4.5
Sequence: AGTAACAAAGACTACA
Locus tag: all4312
all4312 -75 4.5 AGTAACAAAGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -265
Score: 3.5
Sequence: TGGAAAAATTAAAACA
Locus tag: alr4344
alr4344 -265 3.5 TGGAAAAATTAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: -151
Score: 3.7
Sequence: GGTATCATTATGAACA
Position: -111
Score: 3.7
Sequence: AGTATAGGAAAGTACA
Locus tag: alr4392
alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -48
Score: 4.1
Sequence: AATAACAACTGTTACA
Locus tag: all4968
all4968 -48 4.1 AATAACAACTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gor
Ortholog function: glutathione reductase
Nostoc sp. PCC 7120 all4968 -48 4.1 AATAACAACTGTTACA
Trichodesmium erythraeum IMS101 Tery_4747 -208 3.9 TGTAGTCGTAGATATA
-120 4.7 TGTAACTAATTATACT
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