Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Synechococcus sp. JA-3-3Ab

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. JA-3-3Ab
Orthologous TF(s) CYA_2351
Regulated genes 2
Built upon 56 sites [see more]
Predicted regulatory interactions in Synechococcus sp. JA-3-3Ab
Locus tag Position Score Sequence
Position: -109
Score: 3.5
Sequence: AACCATATTTTCTC
Locus tag: CYA_0085
CYA_0085 -109 3.5 AACCATATTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CYA_0085
Ortholog function: hypothetical protein
Synechococcus sp. JA-3-3Ab CYA_0085 -109 3.5 AACCATATTTTCTC
Position: -18
Score: 4
Sequence: GAGTATTTATTCCC
Locus tag: CYA_0520
CYA_0520 -18 4 GAGTATTTATTCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NADH dehydrogenase subunit
Synechococcus sp. JA-3-3Ab CYA_0520 -18 4 GAGTATTTATTCCC