Propagation of CcmR regulog to Synechococcus sp. JA-3-3Ab

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus sp. JA-3-3Ab
Orthologous TF(s)	CYA_1081
Regulated genes	4

Built upon 72 sites [see more]

Predicted regulatory interactions in *Synechococcus sp. JA-3-3Ab*
	Locus tag	Position	Score	Sequence
Position: -107 Score: 5 Sequence: CTTGATTTTTGTCTAT Locus tag: CYA_0640
	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801	PCC8801_4247	-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421	gvip132	-139	5	ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843	MAE_15120	-71	4.9	ATTGACTAGAATCTAT
Nostoc sp. PCC 7120	alr4156	-245	5.9	ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0172	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1732	-204	3.9	ATTGTCGCTTGACTAT

Position: -185 Score: 4.2 Sequence: ATAAACGGAAGTCTAT Position: -153 Score: 4.4 Sequence: ATTGTATTGTTTCTAT Locus tag: CYA_0894
	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -82 Score: 5.3 Sequence: ATAGATAAAAATCTAT Locus tag: CYA_1414
	CYA_1414	-82	5.3	ATAGATAAAAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Synpcc7942_2328
Ortholog function: Predicted permease
Microcystis aeruginosa NIES-843	MAE_62080	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Synechococcus sp. JA-3-3Ab

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --