Propagation of KdgR regulog to Escherichia coli CFT073
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Escherichia coli CFT073 |
| Orthologous TF(s) | c2236 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -123
Score: 5.4 Sequence: AAATGAAATGATGTTTTGAAT
Locus tag: c0318
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| c0318 | -123 | 5.4 | AAATGAAATGATGTTTTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spiX | ||||
| Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
|
Position: -139
Score: 5.4 Sequence: ATTCAAAACATCATTTCATTT
Locus tag: c0319
|
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| c0319 | -139 | 5.4 | ATTCAAAACATCATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ogl | ||||
| Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
| Enterobacter sp. 638 | Ent638_3293 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
| Yersinia pestis KIM | y1875 | -96 | 5.8 | AAATGAAACATTGTTTCTATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2426 | -180 | 5.8 | AAATGAAACATTGTTTCTATA |
|
Position: -70
Score: 5 Sequence: TTTTGAAACGCTGTTTTTGTT
Locus tag: c2071
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| c2071 | -70 | 5 | TTTTGAAACGCTGTTTTTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykF | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
| Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
| Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
| Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
|
Position: -222
Score: 5.3 Sequence: TATGAAAACAGCATTTCATTT
Locus tag: c2098
|
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| c2098 | -222 | 5.3 | TATGAAAACAGCATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsA | ||||
| Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
| Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
| Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
| Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
|
Position: -131
Score: 5.3 Sequence: AAATGAAATGCTGTTTTCATA
Locus tag: c2099
|
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| c2099 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsR | ||||
| Ortholog function: PEP synthetase regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
| Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
| Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
| Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
|
Position: -130
Score: 6.3 Sequence: AAATGAAACATTGTTTTATTT
Position: -63
Score: 5.9 Sequence: AAACGAAACAGTGTTTTATTA
Locus tag: c3440
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| c3440 | -130 | 6.3 | AAATGAAACATTGTTTTATTT | |
| -63 | 5.9 | AAACGAAACAGTGTTTTATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
| Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
|
Position: -64
Score: 5.4 Sequence: ATAAAAAACGGCGTTTCATAA
Locus tag: c3848
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| c3848 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygjV | ||||
| Ortholog function: putative transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
| Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
|
Position: -33
Score: 5.5 Sequence: AAGTGAAACATTGTTTTAATA
Locus tag: c5352
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| c5352 | -33 | 5.5 | AAGTGAAACATTGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |