Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Pectobacterium carotovorum WPP14

Reference regulog properties
Source regulog: NsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum WPP14
Orthologous TF(s) null
Regulated genes 8
Built upon 73 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum WPP14
Locus tag Position Score Sequence
Position: -91
Score: 5.6
Sequence: AATGCATTTAAAATACATA
Locus tag: null
null -91 5.6 AATGCATTTAAAATACATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehB
Ortholog function: Tellurite resistance protein TehB
Yersinia pestis KIM y2361 -44 5.9 GTTGCATATAAAATGCATC
Serratia proteamaculans 568 Spro_0987 -63 5.5 CATGTATTTTATATGCAAC
Position: -75
Score: 4.8
Sequence: GAGGTATATGATATACACC
Locus tag: null
null -75 4.8 GAGGTATATGATATACACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: uncharacterized protein/domain, possibly involved in tellurite resistance
Citrobacter koseri ATCC BAA-895 CKO_01824 -224 4.6 ATGGTATTTAAAACACATC
Enterobacter sp. 638 Ent638_2121 -81 4.6 GTTGCATAATAAGTGCACC
Proteus mirabilis HI4320 PMI0798 -137 5.1 ATTGCATTTGAAATACTTC
Position: -12
Score: 4.1
Sequence: GAGGTATTCCATATGCAAG
Locus tag: null
null -12 4.1 GAGGTATTCCATATGCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Iron binding protein SufA for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -248 4.1 TAGTCATTTTCAATACAAC
Salmonella typhimurium LT2 STM1369 -248 3.8 TAGTCATTTTCTATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -116 4 TATGCTTATAAAAAGCACT
Enterobacter sp. 638 Ent638_1760 -249 3.8 TAGGCATTATCTATACATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -191 3.9 AATAAATTAAAGATATACC
Position: -39
Score: 5.9
Sequence: ATTGCATTTAAAATACATC
Locus tag: null
null -39 5.9 ATTGCATTTAAAATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: hypothetical protein involved in nitrosative stress
Escherichia coli str. K-12 substr. MG1655 b2732 -38 5.1 GATGTAATATAAATACATC
Salmonella typhimurium LT2 STM2860 -40 4.4 GGTGTAAAATAAATACACC
Enterobacter sp. 638 Ent638_3209 -39 4.1 GATGTATTATTTATGCACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2415 -39 5.6 ATTGTATTTAAAATGCATC
Proteus mirabilis HI4320 PMI1959 -215 3.7 ATTGTTTGTTAAATAAAAT
-38 5.8 AATGCATTTTAAATGCAAC
Position: -106
Score: 5.8
Sequence: CAAGCATTTAAAATGCAAC
Locus tag: null
null -106 5.8 CAAGCATTTAAAATGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Yersinia pestis KIM y2819 -90 4.7 ATTGCATTAAAAATACCTT
-38 5.3 CACGCATTACAAATACAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -38 5.8 CAAGCATTTAAAATGCAAC
Edwardsiella tarda EIB202 ETAE_2215 -37 5.2 CAAGCATAATAAATGCAAC
Proteus mirabilis HI4320 PMI2112 -58 5.3 GTTGCATATTTAATGCAAC
Position: -51
Score: 5.8
Sequence: GATGCATGTAAAATACAAC
Locus tag: null
null -51 5.8 GATGCATGTAAAATACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Escherichia coli str. K-12 substr. MG1655 b2552 -47 5.7 GATGCATTTGAGATACATC
Salmonella typhimurium LT2 STM2556 -79 4.8 GATCCATTTACAATGCAAG
-47 5.8 GATGCATTTGATATACATC
Citrobacter koseri ATCC BAA-895 CKO_00235 -47 5.5 GATGTATTTGACATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02877 -47 6.3 GATGCATTTAAAATGCATC
Enterobacter sp. 638 Ent638_3037 -47 6.2 GATGCATATAAAATACATC
Yersinia pestis KIM y1321 -58 6.1 GATGCATTTAAAATACATG
Serratia proteamaculans 568 Spro_3639 -59 6 GATGCATTTAAAATGCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3251 -51 5.9 GATTCATATAAAATACAAC
Edwardsiella tarda EIB202 ETAE_2822 -45 6.2 GTTGCATTTAAAATACAAC
Proteus mirabilis HI4320 PMI1868 -61 5.4 GTTGTATTAAAAATACATG
Photorhabdus luminescens subsp. laumondii TTO1 plu3292 -64 5.4 GTTGCATTTAAATTACATG
Position: -50
Score: 6
Sequence: GATGCATTTAAAATGCAAT
Locus tag: null
null -50 6 GATGCATTTAAAATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Escherichia coli str. K-12 substr. MG1655 b4209 -47 6.4 GATGCATTTAAAATACATC
Salmonella typhimurium LT2 STM4399 -47 6.4 GATGCATTTAAAATACAAC
Citrobacter koseri ATCC BAA-895 CKO_03623 -47 6.2 GATGTATTTAAAATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04602 -47 6.4 GATGCATTTAAAATACATC
Enterobacter sp. 638 Ent638_0379 -48 5.8 GATGCATTTAATATGCACC
Yersinia pestis KIM y0652 -77 5.1 CATGCATTTATTATGCATG
-53 4.8 GGTGTATAATAAATACATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -50 6 GATGCATTTAAAATGCAAT
Edwardsiella tarda EIB202 ETAE_0372 -47 5.7 ATTGCATTTAAAATACACC
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