Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NikR regulog to Edwardsiella ictaluri 93-146

Reference regulog properties
Source regulog: NikR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Edwardsiella ictaluri 93-146
Orthologous TF(s) NT01EI_0269
Regulated genes 2
Built upon 9 sites [see more]
Predicted regulatory interactions in Edwardsiella ictaluri 93-146
Locus tag Position Score Sequence
Position: -174
Score: 5.6
Sequence: GTATGCAGAAGTTTAAAAAAGTGCATAC
Locus tag: NT01EI_1745
NT01EI_1745 -174 5.6 GTATGCAGAAGTTTAAAAAAGTGCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yntA
Ortholog function: predicted nickel ABC transporter, substrate-binding protein
Salmonella typhimurium LT2 STM1255 -101 6.5 GTATGATGTTTTTAAAAGATCGTCATAC
Edwardsiella tarda EIB202 ETAE_1580 -171 5.3 GTATGCAGAAGTAAGGAAAAGTGCATAC
Position: -123
Score: 6.6
Sequence: GTATGACAATTTTATCAAAAGATCATAC
Locus tag: NT01EI_2952
NT01EI_2952 -123 6.6 GTATGACAATTTTATCAAAAGATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nxiA
Ortholog function: high-affinity nickel-transporter
Salmonella typhimurium LT2 STM2783 -79 6.2 GTGTGACGTTTTAATCAAATGATCATAC
Edwardsiella tarda EIB202 ETAE_2654 -120 6.9 GTATGACAATTTCATGAAAAGATCATAC
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