Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Edwardsiella ictaluri 93-146

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Edwardsiella ictaluri 93-146
Orthologous TF(s) NT01EI_1213
Regulated genes 9
Built upon 125 sites [see more]
Predicted regulatory interactions in Edwardsiella ictaluri 93-146
Locus tag Position Score Sequence
Position: -163
Score: 4.1
Sequence: TTCCTCTTTTGGGTTA
Locus tag: NT01EI_1214
NT01EI_1214 -163 4.1 TTCCTCTTTTGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Serratia proteamaculans 568 Spro_3489 -243 4.8 TCCCCCTAAAGGGGTA
Edwardsiella tarda EIB202 ETAE_1112 -169 4.1 TTCCTCTTTTGGGTTA
Position: -186
Score: 3.9
Sequence: TAACCCAAAAGAGGAA
Locus tag: NT01EI_1215
NT01EI_1215 -186 3.9 TAACCCAAAAGAGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
Position: -240
Score: 4.4
Sequence: TACCCAAGAATGAGTA
Locus tag: NT01EI_1665
NT01EI_1665 -240 4.4 TACCCAAGAATGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -97
Score: 4.3
Sequence: TACCCCAAATGAGTTA
Locus tag: NT01EI_2769
NT01EI_2769 -97 4.3 TACCCCAAATGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Escherichia coli str. K-12 substr. MG1655 b2201 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2254 -132 4.8 TACCTCTATCGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00574 -612 4.6 TACCCCAATCGGGGTA
Yersinia pestis KIM y1567 -112 4.8 TACCTCTATAAGGGTA
Serratia proteamaculans 568 Spro_3391 -49 4.9 TACCCCTATTGGAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Edwardsiella tarda EIB202 ETAE_2461 -64 4.4 TACCCCGAATGAGTTA
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