Propagation of Crp regulog to Edwardsiella ictaluri 93-146
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Edwardsiella ictaluri 93-146 |
| Orthologous TF(s) | NT01EI_3665 |
| Regulated genes | 134 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -204
Score: 4.2 Sequence: AAACGTGATCAATCTAACACCT
Locus tag: NT01EI_0110
|
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| NT01EI_0110 | -204 | 4.2 | AAACGTGATCAATCTAACACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: porphobilinogen deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3805 | -236 | 4.2 | AAACGTGATCAATTTAACACCT |
| Salmonella typhimurium LT2 | STM3938 | -219 | 4.2 | AAACGTGATCAATTTAACACCT |
| Citrobacter koseri ATCC BAA-895 | CKO_00147 | -220 | 4.2 | AAACGTGATCAATTTAACACCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04304 | -232 | 4.2 | AAACGTGATCAATTTAACACCT |
| Enterobacter sp. 638 | Ent638_3987 | -211 | 4.2 | AAACGTGATCAATCTAACACCT |
| Serratia proteamaculans 568 | Spro_0178 | -223 | 4.2 | AAACGTGATCAATCTAACACCT |
| Edwardsiella tarda EIB202 | ETAE_0118 | -205 | 4.2 | AAACGTGATCAATTTAACACCT |
|
Position: -119
Score: 4 Sequence: AGGTGTTAGATTGATCACGTTT
Locus tag: NT01EI_0111
|
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| NT01EI_0111 | -119 | 4 | AGGTGTTAGATTGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Yersinia pestis KIM | y0382 | -151 | 4 | AGGTGTTAGATTGATCACGTTT |
| Serratia proteamaculans 568 | Spro_0179 | -115 | 4 | AGGTGTTAGATTGATCACGTTT |
| Edwardsiella tarda EIB202 | ETAE_0119 | -119 | 4 | AGGTGTTAAATTGATCACGTTT |
|
Position: -142
Score: 3.9 Sequence: AACTGCGAGTAGCATCACAGTT
Locus tag: NT01EI_0125
|
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| NT01EI_0125 | -142 | 3.9 | AACTGCGAGTAGCATCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntK | ||||
| Ortholog function: gluconate kinase 1 | ||||
| Edwardsiella tarda EIB202 | ETAE_0135 | -142 | 3.9 | AACTGCGAGTAGCATCACAGTT |
|
Position: -148
Score: 5 Sequence: TATTGTGAATATAATCACATTT
Locus tag: NT01EI_0133
|
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| NT01EI_0133 | -148 | 5 | TATTGTGAATATAATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -182
Score: 3.3 Sequence: AAACGTGATTTAACACCTGATT
Locus tag: NT01EI_0183
|
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| NT01EI_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -97
Score: 4.3 Sequence: TTACGTGATCGCGCGCGCAAAA
Locus tag: NT01EI_0193
|
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| NT01EI_0193 | -97 | 4.3 | TTACGTGATCGCGCGCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Edwardsiella tarda EIB202 | ETAE_0188 | -97 | 4.4 | TTACGTGATCGTGCGCGCAAAA |
|
Position: -197
Score: 4.4 Sequence: ATCTGTGAGTATTATCACAGAT
Locus tag: NT01EI_0377
|
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| NT01EI_0377 | -197 | 4.4 | ATCTGTGAGTATTATCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: aspartate ammonia-lyase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4139 | -206 | 4.5 | AGCGGTGATCTATTTCACAAAT |
| -156 | 4.2 | TAAAGTGATCCAGATTACGGTA | ||
| Salmonella typhimurium LT2 | STM4326 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03696 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0326 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Yersinia pestis KIM | y0606 | -224 | 4.6 | AAGTGTGAGAGCAATCACAGAT |
| Serratia proteamaculans 568 | Spro_0406 | -205 | 4.7 | AAACGTGAATGAGATCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_0311 | -197 | 4.4 | ATCTGTGAGTATTATCACAGAT |
| Proteus mirabilis HI4320 | PMI2546 | -206 | 4.1 | ATCCATGAGATAGATCACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -274 | 3.8 | AGATATAATTGGGGTCACAGTT |
| -211 | 5.6 | AATTGTGATAAATATCACATAT | ||
|
Position: -340
Score: 3.9 Sequence: AATAGTAAATTAGCTAACAAAT
Position: -189
Score: 4.6 Sequence: ATCTGTGATAATACTCACAGAT
Position: -95
Score: 3.6 Sequence: TTTTTTGACTCCAATATAATTT
Locus tag: NT01EI_0378
|
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| NT01EI_0378 | -340 | 3.9 | AATAGTAAATTAGCTAACAAAT | |
| -189 | 4.6 | ATCTGTGATAATACTCACAGAT | ||
| -95 | 3.6 | TTTTTTGACTCCAATATAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fxsA | ||||
| Ortholog function: suppressor of F plamsid exlusion of phage T7 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4140 | -202 | 4.1 | TACCGTAATCTGGATCACTTTA |
| -152 | 4.3 | ATTTGTGAAATAGATCACCGCT | ||
| Salmonella typhimurium LT2 | STM4327 | -203 | 4.1 | TACCGTAATCTGGATCACTTAA |
| -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03695 | -156 | 4.1 | TTTTGTGAAATAGGTCACCGCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04530 | -140 | 3.7 | ATCTGTGAAATGGGTCACCGCT |
| Enterobacter sp. 638 | Ent638_0327 | -151 | 3.8 | ATCTGTGAAATGAATCACCGCT |
| Erwinia amylovora ATCC 49946 | EAM_0417 | -161 | 3.9 | ATATCTGTTCCAGGTCACATTG |
| Yersinia pestis KIM | y0607 | -245 | 4.8 | ATCTGTGATTGCTCTCACACTT |
| Serratia proteamaculans 568 | Spro_0407 | -117 | 4.9 | TTCTGTGATCTCATTCACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0623 | -245 | 3.7 | AACTGTGATTGTAGTCACGAGT |
| -185 | 3.6 | AAATGTGCAAAGGCGCACCCAT | ||
| Edwardsiella tarda EIB202 | ETAE_0312 | -189 | 4.6 | ATCTGTGATAATACTCACAGAT |
| Proteus mirabilis HI4320 | PMI2545 | -188 | 4.7 | TTTTGTGATCTATCTCATGGAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4136 | -188 | 5.6 | ATATGTGATATTTATCACAATT |
|
Position: -150
Score: 3.8 Sequence: TGCATTGATTTATTTCACATTC
Locus tag: NT01EI_0441
|
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| NT01EI_0441 | -150 | 3.8 | TGCATTGATTTATTTCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbp | ||||
| Ortholog function: fructose-1,6-bisphosphatase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4232 | -163 | 3.9 | TTTTTTAATCTGCCGCTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04626 | -164 | 3.9 | TTTTCTTATCCGGGGCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0381 | -150 | 3.9 | TGCATTGATTTAGTTCACATTC |
|
Position: -96
Score: 4.8 Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: NT01EI_0475
|
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| NT01EI_0475 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -315
Score: 4.5 Sequence: TTTTGTGATAGTTCTCAACCTT
Locus tag: NT01EI_0501
|
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| NT01EI_0501 | -315 | 4.5 | TTTTGTGATAGTTCTCAACCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuT | ||||
| Ortholog function: Hexuronate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3093 | -274 | 4.2 | TTTCGTGAGTTAGATCAATAAA |
| -152 | 5.1 | ATTTGTGATGGCTCTCACCTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04495 | -250 | 5.2 | ATTTGTGATGTCACTCACCTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03521 | -263 | 4.4 | TTTTGTGACAGCTCTCAACTTT |
| Enterobacter sp. 638 | Ent638_3547 | -261 | 4.2 | TTTCGTGAGTTAGATCAATAAA |
| -139 | 5.2 | TTTTGTGATGTCACTCACCTTT | ||
| Serratia proteamaculans 568 | Spro_4322 | -180 | 4.8 | TTTTGTGATATCACTCAACTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0644 | -208 | 4.8 | TTTTGTGATATCACTCAACTTT |
|
Position: -222
Score: 3.7 Sequence: AAGGTTGAGAACTATCACAAAA
Locus tag: NT01EI_0502
|
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| NT01EI_0502 | -222 | 3.7 | AAGGTTGAGAACTATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Edwardsiella tarda EIB202 | ETAE_0436 | -228 | 3.8 | AAGGTTGAGAGCTATCACAAAA |
|
Position: -205
Score: 4.9 Sequence: TGATGTGATGTGCATCACTATT
Locus tag: NT01EI_0557
|
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| NT01EI_0557 | -205 | 4.9 | TGATGTGATGTGCATCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC2 | ||||
| Ortholog function: Na+ dependent nucleoside transporter | ||||
| Yersinia pestis KIM | y3744 | -154 | 3.8 | CTTTGTCAATAACCTCACATAT |
| -115 | 5.5 | TAATGTGATTATGATCACATTT | ||
| Serratia proteamaculans 568 | Spro_0659 | -181 | 3.9 | AACCGTGACGCATGTCACGTAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0473 | -182 | 4.9 | AATTGTGACGAAGATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_0482 | -232 | 4.9 | TGATGTGATATGCATCACTTTT |
| Proteus mirabilis HI4320 | PMI2418 | -180 | 5.2 | TAGTGTGATTTAGATCTCATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0519 | -178 | 5.5 | TTGTGTGATTCACATCACATTT |
|
Position: -289
Score: 5.3 Sequence: ATATGTGATATAAATCACCAAT
Position: -236
Score: 4.6 Sequence: CAATGTGACGTTGAACACAAAT
Locus tag: NT01EI_0562
|
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| NT01EI_0562 | -289 | 5.3 | ATATGTGATATAAATCACCAAT | |
| -236 | 4.6 | CAATGTGACGTTGAACACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -108
Score: 4.1 Sequence: TAGTTTGACCCTACTCACGCTT
Locus tag: NT01EI_0599
|
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| NT01EI_0599 | -108 | 4.1 | TAGTTTGACCCTACTCACGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanE | ||||
| Ortholog function: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) | ||||
| Salmonella typhimurium LT2 | STM3337 | -113 | 4.4 | TTTAGTGAAGCAGATCGCACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04626 | -116 | 4.2 | TTTAGTGAAGTAGATCGCACTC |
|
Position: -277
Score: 4.7 Sequence: AACTGTGATGCAGGCCACATTT
Locus tag: NT01EI_0605
|
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| NT01EI_0605 | -277 | 4.7 | AACTGTGATGCAGGCCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -199 | 4.2 | AATTTTGCGCTAAAGCACATTT |
| Salmonella typhimurium LT2 | STM3330 | -288 | 3.7 | ATCTGTGCTACAGCACACTTTT |
| Enterobacter sp. 638 | Ent638_3656 | -298 | 3.9 | GATAGTGAGTCAGATCACACTC |
| Edwardsiella tarda EIB202 | ETAE_0527 | -278 | 4.9 | AACTGTGATGCAGCCCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -241 | 4 | ATATTTGACCTGATTTATATTT |
|
Position: -272
Score: 4 Sequence: AAATGTGATCATACAAACGATT
Locus tag: NT01EI_0749
|
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| NT01EI_0749 | -272 | 4 | AAATGTGATCATACAAACGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coaE | ||||
| Ortholog function: dephospho-CoA kinase | ||||
| Erwinia amylovora ATCC 49946 | EAM_0727 | -75 | 4.4 | TCGTGTGATCTGCGCCACATTA |
| Yersinia pestis KIM | y0757 | -259 | 3.8 | AAATGTGATCGGGCGTAAAACA |
| Serratia proteamaculans 568 | Spro_0774 | -158 | 3.8 | CAGTGTGACCGCCCGCTCATTT |
| Edwardsiella tarda EIB202 | ETAE_0650 | -272 | 4 | AAATGTGATCATACAAACGATT |
| Proteus mirabilis HI4320 | PMI2052 | -80 | 3.8 | TCTTGTGATAAAAATCAGTTTA |
|
Position: -320
Score: 3.8 Sequence: ATTTTTTATGCACTTTTCATTT
Position: -143
Score: 3.1 Sequence: TTTCATGATTTGCATCAATAGT
Locus tag: NT01EI_0757
|
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| NT01EI_0757 | -320 | 3.8 | ATTTTTTATGCACTTTTCATTT | |
| -143 | 3.1 | TTTCATGATTTGCATCAATAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -175
Score: 4.2 Sequence: TTTTTTGACAAACATCACCGTT
Locus tag: NT01EI_0815
|
||||
| NT01EI_0815 | -175 | 4.2 | TTTTTTGACAAACATCACCGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mltA | ||||
| Ortholog function: membrane-bound lytic murein transglycosylase A | ||||
| Edwardsiella tarda EIB202 | ETAE_0715 | -175 | 4.2 | TTTTTTGACAAACATCACCGAT |
|
Position: -74
Score: 4 Sequence: AAATGTCATCCATCTCACCATC
Locus tag: NT01EI_0906
|
||||
| NT01EI_0906 | -74 | 4 | AAATGTCATCCATCTCACCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gadB | ||||
| Ortholog function: Glutamate decarboxylase (EC 4.1.1.15) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1493 | -297 | 3.6 | TTTTATAAATGCGTTCAAAATA |
| -158 | 3.3 | TATTGTATTGTTTTTCAATGAA | ||
| -128 | 3.3 | ATTCGCGTAATATCTCACGATA | ||
| Edwardsiella tarda EIB202 | ETAE_2868 | -186 | 3.7 | TAGCGTTATTTTTCTCATCATT |
|
Position: -307
Score: 3.4 Sequence: CCATATGATCTGCGTCACATGA
Locus tag: NT01EI_1120
|
||||
| NT01EI_1120 | -307 | 3.4 | CCATATGATCTGCGTCACATGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: malate synthase A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4014 | -117 | 3.6 | AATTGTTTTTGATTTTGCATTT |
| Salmonella typhimurium LT2 | STM4183 | -168 | 3.3 | TTAATTTATATTGTTATCAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -166 | 3.3 | TATTTTTATTGTTATCAATAAG |
| Yersinia pestis KIM | y0015 | -254 | 3.3 | ATGAGTTATAGCCATTAAAAAT |
| Serratia proteamaculans 568 | Spro_4503 | -228 | 3.5 | TGTTGTTATGTTTATTAACCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3991 | -185 | 3.3 | TTTTTTAATTTTAATCTTCATT |
| Proteus mirabilis HI4320 | PMI2764 | -68 | 3.7 | ATTTTTGATTTTTGTAAAAACT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -65 | 3.8 | GTTTTTGATTTATTTTAAATAT |
|
Position: -139
Score: 4.5 Sequence: TTAGGTGAGTTACGTCACAATA
Locus tag: NT01EI_1132
|
||||
| NT01EI_1132 | -139 | 4.5 | TTAGGTGAGTTACGTCACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ushA | ||||
| Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0480 | -174 | 4 | ATTTGTGATTATTACCAGACTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00461 | -125 | 3.9 | AATTATTATCCAACTAACATAC |
| -94 | 3.7 | AGGTTTGAAGGAAGTCGCAATT | ||
| Enterobacter sp. 638 | Ent638_0959 | -95 | 3.9 | AGATTTGAGGAAAGTCGCAATT |
| Serratia proteamaculans 568 | Spro_1147 | -103 | 4.6 | TAATTTGACGCACATCGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_1034 | -139 | 4.4 | TTAGGTGAGTCACGTCACAATA |
| Proteus mirabilis HI4320 | PMI2177 | -111 | 3.7 | ATATATAACCTACGTCATAAAA |
|
Position: -142
Score: 4 Sequence: TGCCGTGATCTGTATCATGTTA
Locus tag: NT01EI_1277
|
||||
| NT01EI_1277 | -142 | 4 | TGCCGTGATCTGTATCATGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folE | ||||
| Ortholog function: GTP cyclohydrolase I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2153 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2193 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00638 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02591 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2753 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1560 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0639 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: -76
Score: 4.9 Sequence: AAAAGTGATTATTATCACAAAT
Locus tag: NT01EI_1282
|
||||
| NT01EI_1282 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -116
Score: 4.9 Sequence: TGATGTGATCAGTAGCACATTT
Locus tag: NT01EI_1284
|
||||
| NT01EI_1284 | -116 | 4.9 | TGATGTGATCAGTAGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yohJ | ||||
| Ortholog function: LrgA family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2141 | -68 | 4.9 | TAATGTGATCGGTAGCACGTTT |
| Salmonella typhimurium LT2 | STM2181 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00648 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02582 | -68 | 5 | TGATGTGATCGGTAGCACATTT |
| Enterobacter sp. 638 | Ent638_2744 | -68 | 4.7 | TGATGTGATCCGTAGCACGTTT |
| Yersinia pestis KIM | y2654 | -32 | 4.7 | TAGTGTGATGGGTAGCACAGAA |
| Serratia proteamaculans 568 | Spro_1570 | -62 | 4.3 | ATTTGTGGCGGAGGTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2828 | -69 | 4.5 | ATTCGTGATCTGTGGCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_1164 | -68 | 4.9 | TGATGTGATCAGTAGCACATTT |
| Proteus mirabilis HI4320 | PMI0645 | -71 | 5.2 | TATTGTGATCCATAGCACACTT |
|
Position: -200
Score: 3.7 Sequence: TTTGGTGAGCATAATCACATCG
Locus tag: NT01EI_1392
|
||||
| NT01EI_1392 | -200 | 3.7 | TTTGGTGAGCATAATCACATCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompA | ||||
| Ortholog function: outer membrane protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0957 | -188 | 4 | ATGCCTGACGGAGTTCACACTT |
| Salmonella typhimurium LT2 | STM1070 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02111 | -164 | 4 | ATGCCTGACGGAGTTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00986 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT |
| Enterobacter sp. 638 | Ent638_1469 | -189 | 4 | ATGCCTGACGGAGTTCACACTT |
| Serratia proteamaculans 568 | Spro_1754 | -195 | 3.8 | TTTTTAGAGCTTTATCACATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1751 | -200 | 3.9 | TCTTATGACACAAATCACATCA |
| Edwardsiella tarda EIB202 | ETAE_1267 | -196 | 3.7 | TTTGGTGAGCATAATCACATCG |
|
Position: -314
Score: 5.5 Sequence: TTTTGTGATTTGGATCACGTTT
Locus tag: NT01EI_1452
|
||||
| NT01EI_1452 | -314 | 5.5 | TTTTGTGATTTGGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flhD | ||||
| Ortholog function: DNA-binding transcriptional dual regulator with FlhC | ||||
| Edwardsiella tarda EIB202 | ETAE_1336 | -122 | 4 | CGTTATGCTCCATTTCACATTA |
|
Position: -227
Score: 5.2 Sequence: TTTTGTGATGAATATCACAAAC
Locus tag: NT01EI_1641
|
||||
| NT01EI_1641 | -227 | 5.2 | TTTTGTGATGAATATCACAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -153
Score: 4.9 Sequence: GTTTGTGATATTCATCACAAAA
Locus tag: NT01EI_1642
|
||||
| NT01EI_1642 | -153 | 4.9 | GTTTGTGATATTCATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msrB | ||||
| Ortholog function: methionine sulfoxide reductase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1778 | -137 | 5.2 | AAATGTGATTTTCATCACGATT |
| Salmonella typhimurium LT2 | STM1291 | -107 | 4.7 | TAATGTGACATCAGTCACGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01799 | -107 | 4.9 | AAACGTGATTCCGATCACGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01198 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT |
| Enterobacter sp. 638 | Ent638_1676 | -137 | 5.2 | ATATGTGAGAAAGATCACAATT |
| Erwinia amylovora ATCC 49946 | EAM_1930 | -137 | 5.2 | AATGGTGATCTGCATCACAATT |
| Yersinia pestis KIM | y2164 | -85 | 5.1 | ATTTGCGATTTTTATCACATTT |
| Serratia proteamaculans 568 | Spro_2727 | -143 | 5.7 | ATATGTGATCGGTATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2343 | -135 | 5.6 | TTATGTGATACACATCACAATT |
| Edwardsiella tarda EIB202 | ETAE_1484 | -91 | 4.9 | GTTTGTGATGCTCATCACAAAA |
| Proteus mirabilis HI4320 | PMI1503 | -137 | 5.3 | TTATGTGAAATGTATCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2557 | -267 | 4.6 | ATATGCGAGTCACATCACAATA |
|
Position: -206
Score: 4 Sequence: AACTGTTAGGTCGATCACTTAT
Locus tag: NT01EI_1664
|
||||
| NT01EI_1664 | -206 | 4 | AACTGTTAGGTCGATCACTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdk | ||||
| Ortholog function: Thymidine kinase (EC 2.7.1.21) | ||||
| Yersinia pestis KIM | y2145 | -208 | 4.9 | TATTGTGAGATTGCTCATATAA |
| Serratia proteamaculans 568 | Spro_2705 | -203 | 4.3 | AAATGTGATGTCAGACAGAAAT |
| Edwardsiella tarda EIB202 | ETAE_1506 | -206 | 4 | AACTGTTAGGTCGATCACTTAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2497 | -157 | 4.1 | TGGTGTGATGGTGGTCATGAAT |
|
Position: -266
Score: 5.2 Sequence: ATTCGTGATTTTAATCACAAAA
Locus tag: NT01EI_1665
|
||||
| NT01EI_1665 | -266 | 5.2 | ATTCGTGATTTTAATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -241 | 5 | AAATTTGATTTGGATCACGTAA |
| Salmonella typhimurium LT2 | STM1749 | -242 | 4.9 | AATCTTGATTTAGATCACACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -242 | 4.9 | AAATTTGATCTGGATCACGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -237 | 4.7 | ATACTTGATCTAAATCACGTAA |
| Enterobacter sp. 638 | Ent638_2304 | -253 | 4.1 | TAAATTGATTCAGATCATGTTT |
| Erwinia amylovora ATCC 49946 | EAM_1900 | -223 | 3.9 | ATTGATGATCTGCATCATCTTT |
| Yersinia pestis KIM | y2023 | -286 | 5.3 | TTTTGTGATTTAAATCACGAAA |
| Serratia proteamaculans 568 | Spro_2704 | -278 | 5.1 | TTTTATGATTTAAATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -315 | 4.5 | AAGTTCGATGTTGATCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -265 | 5 | TTTCGTGACCTTAATCACAAAA |
| Proteus mirabilis HI4320 | PMI1486 | -246 | 5.4 | TATTGTGATGTAGATCACTTTA |
| -187 | 3.7 | AAAGGAGATCTTTTTAAAATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -237 | 3.7 | TATTTTTATTAGATTAAAAATT |
| -138 | 4.6 | TTATGTGATTAAGATCAATATA | ||
|
Position: -164
Score: 3.9 Sequence: TTTATTGATGCGCATCAATTTT
Locus tag: NT01EI_1685
|
||||
| NT01EI_1685 | -164 | 3.9 | TTTATTGATGCGCATCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -166 | 4.9 | AAAATTGATTTAAATCACATTA |
| -82 | 3.8 | TAATGTGATCTATGTAGGATCA | ||
| Salmonella typhimurium LT2 | STM1732 | -82 | 4.2 | AAATGTGATCTGTATTAGATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -82 | 3.9 | TAATGTGATCTGTATTGGATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -101 | 3.9 | CATTGCGATCGGTAGCAAAAAT |
| -45 | 4 | TAGTGTGATCTAAAACAGATCA | ||
| Enterobacter sp. 638 | Ent638_2283 | -121 | 3.7 | AAAATTAATCTGGATCAACAAA |
| Yersinia pestis KIM | y2044 | -69 | 3.9 | AGATGTGATCTCGATTAGATCA |
| Serratia proteamaculans 568 | Spro_2674 | -135 | 3.8 | TTTTTTGATTCAGATCAATCCT |
| Edwardsiella tarda EIB202 | ETAE_1528 | -161 | 3.9 | CTGATTGATGTCTATCAAATTT |
| Proteus mirabilis HI4320 | PMI1350 | -168 | 4.6 | AAATTTGATGTGGATCAATTAT |
| -85 | 3.8 | AGTTGTGATCGGCATTAGATCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -164 | 4.3 | AACTTTGATTTGGATCAAGTTA |
| -39 | 3.8 | TATTTTGATTGACTTTAAATCA | ||
|
Position: -268
Score: 3.8 Sequence: ATTAACGATAGACGTCACATAA
Locus tag: NT01EI_1721
|
||||
| NT01EI_1721 | -268 | 3.8 | ATTAACGATAGACGTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manX | ||||
| Ortholog function: PTS enzyme IIAB, mannose-specific | ||||
| Edwardsiella tarda EIB202 | ETAE_1559 | -267 | 3.9 | ATTAACGATGGGCGTCACATAA |
|
Position: -70
Score: 5 Sequence: TTATGTGAGTGCTATCACAATA
Locus tag: NT01EI_1799
|
||||
| NT01EI_1799 | -70 | 5 | TTATGTGAGTGCTATCACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_01286 | ||||
| Ortholog function: hypothetical protein | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2434 | -58 | 4.3 | TAGATTGATCTAAATCACAATC |
| Edwardsiella tarda EIB202 | ETAE_1900 | -70 | 5 | TTATGTGAGTGCTATCACAATA |
|
Position: -126
Score: 3.6 Sequence: AATCTGGATAGAGGTCATATTT
Locus tag: NT01EI_1819
|
||||
| NT01EI_1819 | -126 | 3.6 | AATCTGGATAGAGGTCATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: peptidase T | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Salmonella typhimurium LT2 | STM1227 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Enterobacter sp. 638 | Ent638_1640 | -31 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Yersinia pestis KIM | y1791 | -27 | 3.7 | ATATTTGATCATGATCACTTCC |
| Serratia proteamaculans 568 | Spro_2009 | -188 | 4.1 | CGTCGTGAAGAAGATCACACAT |
|
Position: -63
Score: 3.9 Sequence: TATCGTGATCGCCATCACTTCC
Locus tag: NT01EI_1914
|
||||
| NT01EI_1914 | -63 | 3.9 | TATCGTGATCGCCATCACTTCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -113
Score: 4.8 Sequence: ATTTGTGCACTTAATCACATAA
Locus tag: NT01EI_2071
|
||||
| NT01EI_2071 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -317
Score: 4.1 Sequence: AAATGAGATGTGGCTAGCAGAT
Locus tag: NT01EI_2123
|
||||
| NT01EI_2123 | -317 | 4.1 | AAATGAGATGTGGCTAGCAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1015 | -207 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Salmonella typhimurium LT2 | STM1125 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02041 | -80 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Enterobacter sp. 638 | Ent638_1542 | -249 | 3.7 | TTTTATGCGGCACTTAACACTT |
| Serratia proteamaculans 568 | Spro_2930 | -211 | 3.9 | AAATGTGACGCAGGGTAAACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4218 | -130 | 3.7 | TTGTGCAACCTTGTTAACAAAT |
| Proteus mirabilis HI4320 | PMI1615 | -220 | 3.8 | TAGTGTGAAGTTACATACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1958 | -243 | 4.4 | AAATGTGATTCAGTAAACGTTT |
|
Position: -162
Score: 4.7 Sequence: AAATGTGACAGCCATCAAACAT
Locus tag: NT01EI_2361
|
||||
| NT01EI_2361 | -162 | 4.7 | AAATGTGACAGCCATCAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsG | ||||
| Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1101 | -154 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Salmonella typhimurium LT2 | STM1203 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01957 | -229 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01099 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Enterobacter sp. 638 | Ent638_1616 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Erwinia amylovora ATCC 49946 | EAM_1466 | -162 | 4.6 | AAACGTGATAGCCATCAAACAA |
| Yersinia pestis KIM | y1767 | -166 | 4.4 | AAACGTGACGGCAATCAAACAT |
| Serratia proteamaculans 568 | Spro_1914 | -164 | 4.4 | AAACGTGACTGTCATCAAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1805 | -162 | 4.6 | AAACGTGATAGCAATCAAACAT |
| Proteus mirabilis HI4320 | PMI2292 | -156 | 4.5 | AAACGTGACAGCTATCATATAT |
|
Position: -97
Score: 3.7 Sequence: CATAGTGACAGCGTTCAACAAA
Locus tag: NT01EI_2457
|
||||
| NT01EI_2457 | -97 | 3.7 | CATAGTGACAGCGTTCAACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -73
Score: 3.8 Sequence: ATATCTGTCTGAGGTCACATTT
Locus tag: NT01EI_2460
|
||||
| NT01EI_2460 | -73 | 3.8 | ATATCTGTCTGAGGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: periplasmic L-asparaginase II | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2957 | -125 | 4 | TTTTGTTACCTGCCTCTAACTT |
| Salmonella typhimurium LT2 | STM3106 | -125 | 4.3 | TTTTGTTATCCATCTCTAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04332 | -125 | 3.6 | TTTTGATATCCATCTCTAAAAA |
| Proteus mirabilis HI4320 | PMI0708 | -81 | 3.6 | ATTCGTTCTATTTATCACGGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1616 | -76 | 3.8 | AAGTCTGGTATGTATCACAGAT |
|
Position: -197
Score: 3.5 Sequence: ATTGGTTATTTTTAGCACCCTA
Position: -164
Score: 3.8 Sequence: AAGTTTGAGGCAGTTAACGCAA
Locus tag: NT01EI_2492
|
||||
| NT01EI_2492 | -197 | 3.5 | ATTGGTTATTTTTAGCACCCTA | |
| -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -299
Score: 3.7 Sequence: ATTTGCGAGTCTGATCACGGAC
Locus tag: NT01EI_2541
|
||||
| NT01EI_2541 | -299 | 3.7 | ATTTGCGAGTCTGATCACGGAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -188
Score: 4.2 Sequence: AATCGTGAGGCGGATCAACCAA
Locus tag: NT01EI_2579
|
||||
| NT01EI_2579 | -188 | 4.2 | AATCGTGAGGCGGATCAACCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuA | ||||
| Ortholog function: Mannonate dehydratase (EC 4.2.1.8) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4322 | -271 | 3.8 | TGTTGCGATGAATGTCACATCC |
| -186 | 4.5 | TCTTGTGATGTGGTTAACCAAT | ||
| Salmonella typhimurium LT2 | STM3135 | -205 | 4.3 | AAAATTGACACAGATCAAATAA |
| -155 | 4.6 | ATTTGTGATTTGGTTAGCCAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00609 | -115 | 3.9 | GATTGTGAGCTGGATCAATCAA |
| Enterobacter sp. 638 | Ent638_2767 | -116 | 3.9 | TTCTGTGAGTTGGATCAATCAA |
| Serratia proteamaculans 568 | Spro_3238 | -167 | 3.9 | AACCGTGAAGTGGATCAACCAA |
| -48 | 4.1 | AATCTTGATCACCACCACAATA | ||
| Edwardsiella tarda EIB202 | ETAE_2289 | -188 | 4.2 | AATCGTGAGGCGGATCAACCAA |
|
Position: -271
Score: 4.1 Sequence: ATAATTGACCTGTTTTACATAT
Position: -126
Score: 4.4 Sequence: AAGTGTGTTCTGCTGCACAATT
Locus tag: NT01EI_2588
|
||||
| NT01EI_2588 | -271 | 4.1 | ATAATTGACCTGTTTTACATAT | |
| -126 | 4.4 | AAGTGTGTTCTGCTGCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -206
Score: 4.1 Sequence: AAATGTGCTGAAGGTCTAAAAT
Locus tag: NT01EI_2592
|
||||
| NT01EI_2592 | -206 | 4.1 | AAATGTGCTGAAGGTCTAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruB | ||||
| Ortholog function: PTS system, fructose-specific IIA/FPr component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2169 | -178 | 4.3 | AATTGTGCAGCACATCAAACTT |
| Salmonella typhimurium LT2 | STM2206 | -177 | 4.6 | AAATGTGCTTCACCTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00613 | -50 | 4.1 | AAGTGTGCTTTATCTCTAAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02600 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT |
| Enterobacter sp. 638 | Ent638_2763 | -178 | 4.3 | AAATGTGCTGCACTTCTAAATT |
| Erwinia amylovora ATCC 49946 | EAM_2223 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT |
| Yersinia pestis KIM | y2887 | -178 | 4.1 | AAATGTGCGGAATGTCAAAAAT |
| Serratia proteamaculans 568 | Spro_3230 | -177 | 4 | AAGTGTGCGTGAGGTCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2729 | -180 | 4.1 | AAATGTGCGTGATGTCAAAATT |
| Edwardsiella tarda EIB202 | ETAE_2303 | -199 | 4.1 | AAATGTGCTGAAGGTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1992 | -180 | 4.7 | AAATGTGAGTAATCTCAAAAAA |
|
Position: 7
Score: 3.9 Sequence: AATTGTGCTGTGTTTATCATCA
Locus tag: NT01EI_2599
|
||||
| NT01EI_2599 | 7 | 3.9 | AATTGTGCTGTGTTTATCATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -124
Score: 4.1 Sequence: AACTGTGATTAATATCACTCTG
Locus tag: NT01EI_2652
|
||||
| NT01EI_2652 | -124 | 4.1 | AACTGTGATTAATATCACTCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycdZ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1036 | -52 | 4 | AAATGTGTGCTCGATCTCATTC |
| -50 | 3.7 | ATGTGTGCTCGATCTCATTCAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02033 | -40 | 3.9 | AAATGTGTGCGTGATCTCATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01059 | -52 | 4.1 | TACTGTGTTTTAGATCGCATTC |
| Serratia proteamaculans 568 | Spro_3290 | -125 | 4.2 | TTTTGTGACAAATTCCACATCT |
| -96 | 3.6 | TATCTTGTTTCTCATTACATAT | ||
| -73 | 4.6 | TTATGTGAAATACATCACATGA | ||
| Edwardsiella tarda EIB202 | ETAE_2360 | -124 | 4.3 | AAGTGTGATTGATGTCACTTTG |
| -72 | 3.6 | CGGTGTGATGTCCATCAATGAA | ||
| Proteus mirabilis HI4320 | PMI3124 | -240 | 3.7 | ATTAATAATATATATCAAACAA |
|
Position: -40
Score: 4.8 Sequence: TAATGTGAACAAAATCACGTTA
Locus tag: NT01EI_2798
|
||||
| NT01EI_2798 | -40 | 4.8 | TAATGTGAACAAAATCACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiT | ||||
| Ortholog function: ABC transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0820 | -124 | 4.4 | AGATGTGTACGAAATCACATTT |
| Salmonella typhimurium LT2 | STM0838 | -124 | 4 | AGATGTGTACGAAATCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02298 | -148 | 4.4 | AGATGTGTACGAAATCACATTT |
| Enterobacter sp. 638 | Ent638_1311 | -125 | 4.4 | AGATGTGTACGAAATCACATTT |
| Yersinia pestis KIM | y2677 | -295 | 3.9 | TATCGTTATACCCGTCATACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3010 | -41 | 4 | TAATGCGCGCCAAATCACATTC |
| Edwardsiella tarda EIB202 | ETAE_2518 | -40 | 4.8 | TAATGTGAACAAAATCACGTTA |
|
Position: -195
Score: 3.8 Sequence: TTATGTAAACGATACCACAAAC
Locus tag: NT01EI_2841
|
||||
| NT01EI_2841 | -195 | 3.8 | TTATGTAAACGATACCACAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galE2 | ||||
| Ortholog function: UDP-galactose-4-epimerase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0759 | -78 | 3.8 | TAATTTATTCCATGTCACACTT |
| Salmonella typhimurium LT2 | STM0776 | -78 | 3.7 | TAATTTATTACATGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02376 | -36 | 3.7 | TAATATATTCCATGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00773 | -78 | 3.7 | TAACTTGTGCTATGTCACACTT |
| -44 | 4.1 | ATATGCTATCTTCCTCACAAAC | ||
| Yersinia pestis KIM | y3043 | -163 | 3.7 | TTATTTGTCTATGCTCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1389 | -72 | 3.7 | ATTCTCGCTGTAGATCACCTTT |
| Edwardsiella tarda EIB202 | ETAE_2564 | -195 | 3.7 | TAGTGTAAGCGATACCACAAAC |
|
Position: -222
Score: 3.6 Sequence: TATTGTTATATTTGTTATCTTT
Locus tag: NT01EI_2864
|
||||
| NT01EI_2864 | -222 | 3.6 | TATTGTTATATTTGTTATCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I | ||||
| Edwardsiella tarda EIB202 | ETAE_2580 | -222 | 3.6 | TATTGTTATATTTGTTATCTTT |
|
Position: -261
Score: 3.7 Sequence: ATGCGTGACCGCTGTCACTGTT
Locus tag: NT01EI_2872
|
||||
| NT01EI_2872 | -261 | 3.7 | ATGCGTGACCGCTGTCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -190
Score: 4.6 Sequence: ATTTGTGATTATTATCACCAAC
Locus tag: NT01EI_2908
|
||||
| NT01EI_2908 | -190 | 4.6 | ATTTGTGATTATTATCACCAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0678 | -212 | 4.3 | AAATTTAATTCGTATCGCAAAT |
| -178 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Salmonella typhimurium LT2 | STM0684 | -205 | 3.7 | AAAATTAATTCGCCTCGCAAAT |
| -171 | 4.7 | TTTTGTGATTATAATCACTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02486 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 5.2 | TTTTGTGATTTGAATCACCAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00699 | -217 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -183 | 5 | TTTTGTGATAATTATCACCAAA | ||
| Enterobacter sp. 638 | Ent638_1193 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Erwinia amylovora ATCC 49946 | EAM_1147 | -195 | 4.9 | ATATGTGATTAAAGTCACCTTA |
| Yersinia pestis KIM | y1202 | -214 | 5.1 | TTTTGTGATAAATATCACCAAA |
| Serratia proteamaculans 568 | Spro_1227 | -194 | 5.3 | TTTTGTGATTTACATCACCAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1326 | -180 | 5 | TTATGTGATAAAAATCACCAAA |
| Edwardsiella tarda EIB202 | ETAE_2617 | -190 | 5 | ATTTGTGATAACTATCACCAAT |
| Proteus mirabilis HI4320 | PMI0454 | -217 | 4.9 | ATTTGTGATTAAAGTCACCTAT |
|
Position: -229
Score: 3.6 Sequence: AAGTGTGATGTAATGTGCTAAA
Position: -224
Score: 3.6 Sequence: TGATGTAATGTGCTAAAAATTT
Position: -19
Score: 3.6 Sequence: ACTCTTGATGGACATAACAATG
Locus tag: NT01EI_3083
|
||||
| NT01EI_3083 | -229 | 3.6 | AAGTGTGATGTAATGTGCTAAA | |
| -224 | 3.6 | TGATGTAATGTGCTAAAAATTT | ||
| -19 | 3.6 | ACTCTTGATGGACATAACAATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhaM | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4470 | -228 | 4.6 | TTTTGTGATCTGCCGCAAATAG |
| Salmonella typhimurium LT2 | STM3238 | -230 | 4.5 | TGTTGTGATACGCGTCAAATAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04510 | -180 | 4.7 | TGTTGTGATCTGCTTCAAGAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04419 | -230 | 3.6 | CGCTGTGAGCAGATTAACAAAA |
|
Position: -262
Score: 3.8 Sequence: AGATGTGTTTACGGTCACACTG
Position: -226
Score: 3.4 Sequence: ATGCGTGACACGGCTTAACCTT
Locus tag: NT01EI_3189
|
||||
| NT01EI_3189 | -262 | 3.8 | AGATGTGTTTACGGTCACACTG | |
| -226 | 3.4 | ATGCGTGACACGGCTTAACCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csiE | ||||
| Ortholog function: Stationary phase inducible protein CsiE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2535 | -104 | 3.5 | TTCTGTGACGCTTGCCAACATT |
| Salmonella typhimurium LT2 | STM2553 | -106 | 3.8 | TTCTGTGACACTCCTCAGCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00245 | -105 | 3.4 | TTCTGTGATGCTCGCCAGCATT |
| -42 | 3.6 | TTTAGCTATCCTTATCAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2496 | -103 | 3.4 | TTTTGTGACCTGCCTTAAAAGC |
| Yersinia pestis KIM | y1328 | -161 | 4.1 | TAATGTAACACATAGCGCATTA |
| Serratia proteamaculans 568 | Spro_3633 | -276 | 3.4 | AAAGGTGGTGTTCATATCAATA |
|
Position: -13
Score: 3.7 Sequence: TAATGTGATGATGATGCAAAAA
Locus tag: NT01EI_3213
|
||||
| NT01EI_3213 | -13 | 3.7 | TAATGTGATGATGATGCAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Salmonella typhimurium LT2 | STM2670 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -159 | 3.8 | TATTGTTATACGCATCGCGCCA |
| Edwardsiella tarda EIB202 | ETAE_2837 | -117 | 3.8 | ATGTACGATATTGTTTACATAT |
| Proteus mirabilis HI4320 | PMI0387 | -214 | 4.5 | TTATTTTATCTTAGTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -262 | 3.6 | TGTTTTGATATTGATTTTATTT |
|
Position: -245
Score: 4.1 Sequence: TAATTTGAAAAGAATCTCAATT
Position: -73
Score: 3.7 Sequence: ATTTGTGGCGATGTTGACATAT
Locus tag: NT01EI_3348
|
||||
| NT01EI_3348 | -245 | 4.1 | TAATTTGAAAAGAATCTCAATT | |
| -73 | 3.7 | ATTTGTGGCGATGTTGACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0411 | -250 | 3.7 | TTTTGTTACTCTGCTTACATCA |
| -129 | 3.9 | AACTGTGAAACGAAACATATTT | ||
| Salmonella typhimurium LT2 | STM0413 | -129 | 4 | ATATGTGAAACAAGACATATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02750 | -131 | 3.7 | ATCTGTGAAACAAGACATATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00363 | -131 | 3.8 | TTATGTGAAACAACACGTATTT |
| Enterobacter sp. 638 | Ent638_0879 | -124 | 4.1 | ATATGTGAAACAACACATATTT |
| Erwinia amylovora ATCC 49946 | EAM_2589 | -218 | 5.3 | ATTTGTGATAAAAATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3796 | -172 | 5.5 | TTATGTGATTAAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2935 | -245 | 4.6 | TAATTTGATGAGAATCTCAATT |
|
Position: -233
Score: 4.9 Sequence: AATTGTGATGCAATGCACGTTT
Locus tag: NT01EI_3369
|
||||
| NT01EI_3369 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: epd | ||||
| Ortholog function: D-erythrose 4-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2927 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3070 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04297 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03356 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3340 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2813 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3309 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3913 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2958 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0241 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -61
Score: 4.6 Sequence: TTATGTGATCGTGCGCACTTTA
Locus tag: NT01EI_3377
|
||||
| NT01EI_3377 | -61 | 4.6 | TTATGTGATCGTGCGCACTTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galP | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2943 | -156 | 3.6 | TATGATGATATAACTCAATTAT |
| -82 | 4.9 | TGATGTGATTTGCTTCACATCT | ||
| Salmonella typhimurium LT2 | STM3091 | -83 | 4.6 | CATTGTGATTAGCCTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_04318 | -83 | 5.3 | TAACGTGATTCGAATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03376 | -84 | 3.8 | AGCCGTGATTATAGTCACGTTT |
| Enterobacter sp. 638 | Ent638_3347 | -171 | 3.9 | TATTGGGATGCACATCAACTCT |
| -102 | 3.7 | TAGTGTAACCGATTACACCAAT | ||
| -84 | 5.3 | CAATGTGATTTATCTCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2827 | -152 | 4.1 | TCATGTGATCTGTCGCACAGTC |
| Serratia proteamaculans 568 | Spro_1160 | -276 | 4.5 | TGGTGTGATATCGGTTACATTT |
| -100 | 3.6 | TTGTGTAATCGTTTCCACTAAT | ||
| -82 | 4.6 | TAATGTGATCGCACTCACTTAC | ||
| Edwardsiella tarda EIB202 | ETAE_2966 | -275 | 3.7 | CAAAGTGAAAACGATTACATTT |
| -61 | 4.5 | TTATGTGATCATGCGCACTTTA | ||
|
Position: -199
Score: 3.7 Sequence: ATATGAGCGATCTCTCACAGTA
Locus tag: NT01EI_3468
|
||||
| NT01EI_3468 | -199 | 3.7 | ATATGAGCGATCTCTCACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -90
Score: 4.5 Sequence: ATCTGTGACGCAAATCACTTTT
Locus tag: NT01EI_3483
|
||||
| NT01EI_3483 | -90 | 4.5 | ATCTGTGACGCAAATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aaeR | ||||
| Ortholog function: LysR-family transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3243 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Salmonella typhimurium LT2 | STM3367 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04651 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03652 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Enterobacter sp. 638 | Ent638_3680 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_3128 | -37 | 5.3 | AAATGTGATCTAAATCACTTTT |
| Yersinia pestis KIM | y0180 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Serratia proteamaculans 568 | Spro_4393 | -37 | 4.9 | ATCTGTGATCTAAATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0276 | -37 | 5.1 | TAGTGTGATCTAAATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3129 | -131 | 4.5 | ATCTGTGACGCAAATCACTTTT |
|
Position: -299
Score: 4.4 Sequence: AAATGAGACTCAGCTCGCATAA
Locus tag: NT01EI_3505
|
||||
| NT01EI_3505 | -299 | 4.4 | AAATGAGACTCAGCTCGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dusB | ||||
| Ortholog function: tRNA-dihydrouridine synthase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3260 | -297 | 4.4 | AAGTGCGAGCAAGCTCACAAAA |
| -212 | 4.3 | AATTGAGAACTTACTCAAATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04672 | -212 | 3.7 | AAATGAGAAGTTACGCAAAATT |
| Enterobacter sp. 638 | Ent638_3699 | -299 | 4.1 | AAATGGGACCCAGATCGCAAAG |
| Erwinia amylovora ATCC 49946 | EAM_3146 | -219 | 4 | TATTGTTAACTTGCTCACAAGA |
| Yersinia pestis KIM | y0213 | -57 | 4.3 | TAACGTGATGTTATTTATAATT |
| Proteus mirabilis HI4320 | PMI3623 | -94 | 3.8 | TTTCGCGATTTGGTTAAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4088 | -191 | 3.7 | CTAAGTGATAAACTTTACCAAT |
|
Position: -169
Score: 4.1 Sequence: TCCTGTGATGTTGTTCACATGT
Locus tag: NT01EI_3554
|
||||
| NT01EI_3554 | -169 | 4.1 | TCCTGTGATGTTGTTCACATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yrdA | ||||
| Ortholog function: carbonic anhydrase, family 3 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3279 | -220 | 3.8 | TCCTGTGAAGTGTTTCACGTTG |
| Salmonella typhimurium LT2 | STM3399 | -222 | 4.3 | TTGTGTGAAGTGATTCACATCC |
| Citrobacter koseri ATCC BAA-895 | CKO_04691 | -221 | 3.9 | TCTTGTGAAGCGTTTCACTTTG |
| -81 | 3.8 | ATTTTTGATACCTGAAACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03680 | -221 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| Enterobacter sp. 638 | Ent638_3711 | -222 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| -47 | 3.6 | TAATGCGATCAAAGTCTTCTAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3993 | -105 | 3.6 | TTACTCGATCCGTGTCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3192 | -235 | 4.1 | TCCTGTGATGTTGTTCACATGT |
|
Position: -217
Score: 3.6 Sequence: AAATATGAGCATCTGCGCACAA
Locus tag: NT01EI_3632
|
||||
| NT01EI_3632 | -217 | 3.6 | AAATATGAGCATCTGCGCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nudE | ||||
| Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3397 | -53 | 3.7 | AAGCGTGTCCGATATCGCACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04820 | -54 | 4.1 | AACCGTGCTGTATATCGCACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03768 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA |
| Enterobacter sp. 638 | Ent638_3810 | -55 | 3.6 | AACCGTGCGTCATATCGCACAA |
| Yersinia pestis KIM | y3923 | -247 | 4.5 | CAATGTGATCAAGTTCTAATAT |
| Serratia proteamaculans 568 | Spro_4612 | -135 | 4.4 | CAATGTGATCAAGATCGGATTT |
| Edwardsiella tarda EIB202 | ETAE_3268 | -116 | 3.6 | AAATATGAGCATCTGCGCACAA |
|
Position: -138
Score: 4.5 Sequence: AGTTGAGATCATAATCACAAAT
Locus tag: NT01EI_3658
|
||||
| NT01EI_3658 | -138 | 4.5 | AGTTGAGATCATAATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ulaA | ||||
| Ortholog function: Ascorbate-specific PTS system, EIIC component | ||||
| Edwardsiella tarda EIB202 | ETAE_3292 | -138 | 4.5 | AGTTGAGATCATAATCACAAAT |
|
Position: -201
Score: 3.8 Sequence: AAATGTGATCAGCCGCAATTTC
Locus tag: NT01EI_3669
|
||||
| NT01EI_3669 | -201 | 3.8 | AAATGTGATCAGCCGCAATTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: transcriptional regulator MalT | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3418 | -142 | 4.3 | AATTGTGACACAGTGCAAATTC |
| Salmonella typhimurium LT2 | STM3515 | -143 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_04840 | -142 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03788 | -142 | 4.4 | ATTTGTGACATAGAGCAAATTC |
| Enterobacter sp. 638 | Ent638_3831 | -142 | 4.6 | AATTGTGACAGAGTGCAAATTA |
| Yersinia pestis KIM | y3900 | -202 | 4.6 | AATTGTGATCCGTAGCAACTTA |
| Serratia proteamaculans 568 | Spro_4637 | -203 | 4 | AAGTGTGATCAATAGCAATATA |
| Edwardsiella tarda EIB202 | ETAE_3303 | -212 | 3.8 | AAATGTGATCAGCCGCAATTTC |
|
Position: -124
Score: 3.7 Sequence: TTGTGTTATCTGCGTTGCATTG
Position: -74
Score: 3.6 Sequence: GTATTTGTTGCTTATCGCATAT
Locus tag: NT01EI_3679
|
||||
| NT01EI_3679 | -124 | 3.7 | TTGTGTTATCTGCGTTGCATTG | |
| -74 | 3.6 | GTATTTGTTGCTTATCGCATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -155
Score: 3.7 Sequence: TTATGCGTTTCAGCTCATAGAT
Locus tag: NT01EI_3750
|
||||
| NT01EI_3750 | -155 | 3.7 | TTATGCGTTTCAGCTCATAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dctA | ||||
| Ortholog function: C4-dicarboxylate transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3528 | -143 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Salmonella typhimurium LT2 | STM3614 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04970 | -145 | 4 | TTGTGCGAGCCAGCTCAAAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03878 | -143 | 3.9 | TTGTGCGAGTCAGCTCAAAGAT |
| Erwinia amylovora ATCC 49946 | EAM_3380 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4362 | -157 | 3.8 | TGACGTGATTCAGCTCTTGTTT |
| Edwardsiella tarda EIB202 | ETAE_3379 | -155 | 3.6 | TTATGCGTTTCAGCTCATAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3205 | -176 | 4.9 | TTATGTGATCTATATCTTAAAA |
|
Position: -258
Score: 4.2 Sequence: AAGTGCGATCGGGATCGAAAAA
Locus tag: NT01EI_3801
|
||||
| NT01EI_3801 | -258 | 4.2 | AAGTGCGATCGGGATCGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytR | ||||
| Ortholog function: transcriptional repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3934 | -128 | 3.9 | AAATTCAATATTCATCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03060 | -129 | 3.8 | AAATTAAATATCCATCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04229 | -162 | 3.6 | TCTTGCGAGCCGGATCGAAAAA |
| -143 | 3.9 | AAATTTAACAAGCATCACGTTT | ||
| Yersinia pestis KIM | y0297 | -177 | 3.7 | TTCTGCGAGCCAGTTCGAAAAA |
| -135 | 3.6 | TTATGCAAATTAGGTAACAAAT | ||
| Edwardsiella tarda EIB202 | ETAE_3434 | -258 | 4.2 | AAGTGCGATCGGGATCGAAAAA |
| -175 | 3.6 | ATATGTGATCATATACTCATCG | ||
| Proteus mirabilis HI4320 | PMI3218 | -207 | 4.3 | TTTTGCGAACTACCTCATAAAA |
| -189 | 3.9 | AAAAACGATTGGTATCACACTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4760 | -213 | 4.2 | ATTTGCGAGCCATATCGAATAA |
| -195 | 4.6 | ATAAATGATTTATATCACACTT | ||
|
Position: -150
Score: 5 Sequence: TTTTGTGATGAATGTCACGTAT
Locus tag: NT01EI_3833
|
||||
| NT01EI_3833 | -150 | 5 | TTTTGTGATGAATGTCACGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aphA | ||||
| Ortholog function: acid phosphatase/phosphotransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4055 | -130 | 3.6 | CATCCTGCTTTTCATCACAAAA |
| -57 | 4 | TTTTGCAACAAATCTCACAATA | ||
| Salmonella typhimurium LT2 | STM4249 | -139 | 3.7 | TGTTGTGATCATCCTCTTTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03845 | -255 | 3.9 | TATTGTGAATGCGTGTACAGAA |
| -224 | 3.7 | GTGTGTGTGGTTTATCACACAT | ||
| Enterobacter sp. 638 | Ent638_0259 | -57 | 3.8 | TTTTTTGACCATTCGCTCAATT |
| Edwardsiella tarda EIB202 | ETAE_3469 | -150 | 5 | TTTTGTGATGAATGTCACGTAT |
| -98 | 3.7 | AACATAGATCATGATCACATTA | ||
| Proteus mirabilis HI4320 | PMI0729 | -148 | 4.3 | AAGTGTTAGATAGATCAAAAAA |
| -87 | 4.3 | TAACGTGCGCTATATCTCATTT | ||
| -34 | 4.3 | TTCTGTGATTAATATAAAAATT | ||
|
Position: -160
Score: 3.5 Sequence: AATTATGAATAAAAATACATTA
Locus tag: NT01EI_3847
|
||||
| NT01EI_3847 | -160 | 3.5 | AATTATGAATAAAAATACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -65
Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT
Locus tag: NT01EI_3849
|
||||
| NT01EI_3849 | -65 | 3.9 | TAATGTATTTTTATTCATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -66 | 3.7 | TAGTGTATTTTTATTCATAAAT |
| Salmonella typhimurium LT2 | STM4120 | -66 | 3.9 | TAATGTATTTTTATTCATAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -27 | 4.3 | TAATGTATTTTTATTCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -27 | 4 | TATTGTATTTTTATTCAAAATA |
| Enterobacter sp. 638 | Ent638_4029 | -66 | 4.2 | TAGTGTATTTTTATTCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0137 | -66 | 3.8 | TATTGTATTTTTATTCACTATT |
| Yersinia pestis KIM | y0309 | -223 | 3.6 | TATTTTTATTTATGTCAATAAA |
| Serratia proteamaculans 568 | Spro_4782 | -71 | 4.3 | TATTGTATTTTTATTCACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -65 | 4 | TATTGTATTTTTATTCAAAATA |
| Edwardsiella tarda EIB202 | ETAE_3483 | -65 | 3.9 | TATTGTATTTTTATTCATAATT |
| Proteus mirabilis HI4320 | PMI3236 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
|
Position: -267
Score: 4.2 Sequence: GTTTGTGATCCTATTCACGATG
Locus tag: NT01EI_3863
|
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| NT01EI_3863 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3870 | -269 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Salmonella typhimurium LT2 | STM4007 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| -114 | 3.8 | CAATGTGAAAGTTGGCACAGAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03140 | -250 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04178 | -299 | 3.9 | CTTTGTGACCGCTTTCACGGAG |
| Serratia proteamaculans 568 | Spro_4881 | -267 | 4 | GTATGTGATCCCTTTCACGGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0029 | -265 | 4.2 | CTTTGTGATCCCTTTCACGGTG |
| Edwardsiella tarda EIB202 | ETAE_3493 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG |
| Proteus mirabilis HI4320 | PMI2882 | -270 | 4.7 | AATTGTGATCCTTTTCACGCCT |
| -215 | 3.8 | AATTGTGCAACTATTCAGACTT | ||
| -181 | 3.9 | ATTTGTGCAATAATTAAAAAAT | ||
|
Position: -20
Score: 3.9 Sequence: AATAGTGCAGGAGTGCACAAAT
Locus tag: NT01EI_3864
|
||||
| NT01EI_3864 | -20 | 3.9 | AATAGTGCAGGAGTGCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnL | ||||
| Ortholog function: nitrogen regulation protein NR(II) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3869 | -269 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Salmonella typhimurium LT2 | STM4006 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| -114 | 3.8 | CAATGTGAAAGTTGGCACAGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04177 | -299 | 3.9 | CTTTGTGACCGCTTTCACGGAG |
| Serratia proteamaculans 568 | Spro_4882 | -267 | 4 | GTATGTGATCCCTTTCACGGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0028 | -265 | 4.2 | CTTTGTGATCCCTTTCACGGTG |
| Edwardsiella tarda EIB202 | ETAE_3494 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG |
| Proteus mirabilis HI4320 | PMI2883 | -270 | 4.7 | AATTGTGATCCTTTTCACGCCT |
| -215 | 3.8 | AATTGTGCAACTATTCAGACTT | ||
| -181 | 3.9 | ATTTGTGCAATAATTAAAAAAT | ||
|
Position: -296
Score: 3.7 Sequence: AATCGTGAAAATATTTAAATTA
Locus tag: NT01EI_3905
|
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| NT01EI_3905 | -296 | 3.7 | AATCGTGAAAATATTTAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |