Propagation of RhaS regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
| Source regulog: | RhaS - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 |
| Orthologous TF(s) | SSPA3619 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -105
Score: 11.3 Sequence: ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Locus tag: SSPA3618
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| SSPA3618 | -105 | 11.3 | ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaB | ||||
| Ortholog function: Rhamnulokinase (EC 2.7.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03100 | -160 | 10.7 | ACCTTTGCCTCCTTGCCA-(15)-TGTCAGTAACAGGAAGGT |
| Enterobacter sp. 638 | Ent638_4067 | -107 | 10.1 | ATCTTTGATTCCTTGCCA-(15)-TGTCAGTGGCGAGAAGGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0440 | -105 | 9.7 | AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT |
| Escherichia coli str. K-12 substr. MG1655 | b3904 | -105 | 11.1 | ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04213 | -106 | 10.5 | ACCTTTGCTTTCTTGCCA-(15)-TGTCCGTAACGAGAAGGT |
| Salmonella typhimurium LT2 | STM4047 | -105 | 11.3 | ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT |
| Yersinia pestis KIM | y0587 | -212 | 10.1 | ACTTTCGTCATTCTGCCA-(15)-TGGCAGTGATGAGAAGGT |
|
Position: -232
Score: 10.5 Sequence: ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Locus tag: SSPA3619
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| SSPA3619 | -232 | 10.5 | ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaS | ||||
| Ortholog function: L-rhamnose operon transcriptional activator RhaS, AraC family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03099 | -245 | 10.5 | ACCTTCCTGTTACTGACA-(15)-TGGCAAGGAGGCAAAGGT |
| Enterobacter sp. 638 | Ent638_4066 | -245 | 9.1 | ACCTTCTCGCCACTGACA-(15)-TGGCAAGGAATCAAAGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0441 | -262 | 9.8 | ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT |
| Escherichia coli str. K-12 substr. MG1655 | b3905 | -232 | 10.3 | ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04214 | -255 | 10.1 | ACCTTCTCGTTACGGACA-(15)-TGGCAAGAAAGCAAAGGT |
| Salmonella typhimurium LT2 | STM4048 | -232 | 10.5 | ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT |
| Yersinia pestis KIM | y0590 | -265 | 10.2 | ACCTTCTCATCACTGCCA-(15)-TGGCAGAATGACGAAAGT |
|
Position: -271
Score: 9.5 Sequence: TTCTTTGTATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT
Locus tag: SSPA3621
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| SSPA3621 | -271 | 9.5 | TTCTTTGTATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaT | ||||
| Ortholog function: L-rhamnose:proton symporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03094 | -126 | 8.5 | ATAACGTGCTGGTTGCCA-(15)-CGGCAATCCTCAAAAGGT |
| Enterobacter sp. 638 | Ent638_4064 | -127 | 8.3 | TTAACGCGTTGATTGCCA-(15)-CGGCAACCTTCTGAAGGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0450 | -171 | 8.4 | ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT |
| Escherichia coli str. K-12 substr. MG1655 | b3907 | -123 | 9.3 | TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04216 | -127 | 8.6 | TTAAGCCCATGGTTGCCA-(15)-TGGCAACGTCCTGAAGGC |
| Salmonella typhimurium LT2 | STM4050 | -271 | 9.7 | TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT |
| -127 | 7.8 | TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT | ||
| Yersinia pestis KIM | y0593 | -149 | 9.3 | ACCTACTGAATTTTGCCA-(15)-AGGCAGTCAGCCGAAGGT |
|
Position: -106
Score: 10.7 Sequence: ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Locus tag: SSPA3625
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| SSPA3625 | -106 | 10.7 | ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiA | ||||
| Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
| Salmonella typhimurium LT2 | STM4054 | -106 | 10.7 | ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT |