Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Salmonella enterica subsp. enterica serovar Typhi Ty2

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Typhi Ty2
Orthologous TF(s) t1564
Regulated genes 87
Built upon 685 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Typhi Ty2
Locus tag Position Score Sequence
Position: -227
Score: 4.1
Sequence: TTGATGGGTAACAA
Locus tag: t0060
t0060 -227 4.1 TTGATGGGTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citC
Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Citrobacter koseri ATCC BAA-895 CKO_02541 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3375 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2574 -93 3.8 TTGAGCCAAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00034 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0058 -227 4.2 TTGATGGGTAACAA
Position: -116
Score: 4.7
Sequence: CTGATTTCAATCAA
Locus tag: t0157
t0157 -116 4.7 CTGATTTCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -208
Score: 5.5
Sequence: TTGATTTAAATCAA
Position: -155
Score: 5.1
Sequence: TTGTTTTACATCAA
Locus tag: t0263
t0263 -208 5.5 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -124
Score: 5.5
Sequence: TTGATTTAAATCAA
Locus tag: t0264
t0264 -124 5.5 TTGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Citrobacter koseri ATCC BAA-895 CKO_00205 -176 5.1
-123 5.6
Enterobacter sp. 638 Ent638_3064 -172 5.2
-120 5.1
Salmonella typhimurium LT2 STM2646 -177 5.1
-124 5.6
Position: -323
Score: 4.4
Sequence: TTGACCTGGATCAA
Locus tag: t0358
t0358 -323 4.4 TTGACCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -103
Score: 4.5
Sequence: TTGATCCAGGTCAA
Locus tag: t0359
t0359 -103 4.5 TTGATCCAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -92
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: t0527
t0527 -92 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -197
Score: 4.6
Sequence: TTGATGTAAATTAA
Locus tag: t0536
t0536 -197 4.6 TTGATGTAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: 15
Score: 3.5
Sequence: TTGATATTAATCCC
Locus tag: t0547
t0547 15 3.5 TTGATATTAATCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoM
Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00519 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2374 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2277 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02667 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3078 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2317 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3297 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1641 -465 3.6 TTTTATTAAAACAA
Position: -30
Score: 3.8
Sequence: ATGATAAAAAACGA
Locus tag: t0580
t0580 -30 3.8 ATGATAAAAAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -216
Score: 3.7
Sequence: TCGTTTTTTATCAT
Locus tag: t0581
t0581 -216 3.7 TCGTTTTTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -270
Score: 3.3
Sequence: CTGATATTGATAAT
Position: -261
Score: 3.4
Sequence: ATAATGTAAATGAA
Position: -212
Score: 3.2
Sequence: TCTATATAACTCAT
Position: -90
Score: 3.3
Sequence: CTTATTTACAAAAA
Locus tag: t0604
t0604 -270 3.3 CTGATATTGATAAT
-261 3.4 ATAATGTAAATGAA
-212 3.2 TCTATATAACTCAT
-90 3.3 CTTATTTACAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -97
Score: 3.6
Sequence: TTACCTTTAATCAA
Locus tag: t0944
t0944 -97 3.6 TTACCTTTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yecR
Ortholog function: putative outer membrane lipoprotein
Citrobacter koseri ATCC BAA-895 CKO_01043 -288 3.7 CTGTTTTCCATCAT
Salmonella typhimurium LT2 STM1934 -97 3.6 TTACCTTTAATCAA
Position: -131
Score: 4.3
Sequence: TTGTCTTAAATCAT
Locus tag: t1099
t1099 -131 4.3 TTGTCTTAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemA
Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70)
Enterobacter sp. 638 Ent638_2338 -82 4.3 TTGTCTTAAATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2189 -134 4.8
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02235 -143 4.4 TTGTCTGAAATCAA
Salmonella typhimurium LT2 STM1777 -131 4.3 TTGTCTTAAATCAT
Position: -51
Score: 3.4
Sequence: CTGATAAAACGCAA
Locus tag: t1178
t1178 -51 3.4 CTGATAAAACGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -232 4.7 TTGTTATATAACAA
Escherichia coli str. K-12 substr. MG1655 b1761 -397 3.9 TTGATCCTGATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -272 4 ATGATGAATGACAA
Proteus mirabilis HI4320 PMI3008 -176 3.6 TTTAGTGAGGTCAA
Salmonella typhimurium LT2 STM1299 -51 3.4 CTGATAAAACGCAA
Yersinia pestis KIM y3858 -231 3.6 TTGAGTAACGTTAA
Position: -119
Score: 3.7
Sequence: TTGACATGGATTAA
Locus tag: t1420
t1420 -119 3.7 TTGACATGGATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_01581 -114 3.7 TTGACATGGATTAA
Escherichia coli str. K-12 substr. MG1655 b1587 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM1499 -116 3.7 TTGACATGGATTAA
Serratia proteamaculans 568 Spro_1687 -164 4.2 TTGATAGCAGACAA
-40 4.2 ATGACGTTTATCAA
Position: -238
Score: 3.6
Sequence: GTCATATGCATCAA
Locus tag: t1435
t1435 -238 3.6 GTCATATGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -33
Score: 4.7
Sequence: TTGACAAATATCAA
Locus tag: t1564
t1564 -33 4.7 TTGACAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -301
Score: 3.9
Sequence: TTGATTAAACACAG
Locus tag: t1625
t1625 -301 3.9 TTGATTAAACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnA
Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Enterobacter sp. 638 Ent638_2192 -135 4.6 TTGTTTTATCTCAA
Erwinia amylovora ATCC 49946 EAM_1866 37 4.4 TGGATGTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1941 -98 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b1276 -133 3.7 TTGCTTTGCCACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2432 7 4.6 TTGATTTAAAAAAA
Salmonella typhimurium LT2 STM1712 -301 3.9 TTGATTAAACACAG
Yersinia pestis KIM y2063 -37 3.9 TTGAATTAAAACAC
Position: -117
Score: 4.1
Sequence: TTAATCTGGATCAA
Locus tag: t1644
t1644 -117 4.1 TTAATCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -238
Score: 4.7
Sequence: TTGATTTAGATCAC
Locus tag: t1660
t1660 -238 4.7 TTGATTTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -105
Score: 4.7
Sequence: TTGATCGTTATCAA
Locus tag: t1673
t1673 -105 4.7 TTGATCGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Citrobacter koseri ATCC BAA-895 CKO_01301 -105 4.7 TTGATCGTTATCAA
Enterobacter sp. 638 Ent638_2315 -100 4.7 TTGATCGTTATCAA
Escherichia coli str. K-12 substr. MG1655 b1224 -105 4.7 TTGATCGTTATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02214 -106 4.6 TTGATCGCTATCAA
Salmonella typhimurium LT2 STM1764 -105 4.7 TTGATCGTTATCAA
Position: -73
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: t1674
t1674 -73 5.5 TTGATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Citrobacter koseri ATCC BAA-895 CKO_01299 -229 5.5 TTGATTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b1223 -111 4.7 ATGATAAATATCAA
-73 5.4 TTGATTTACATCAA
Salmonella typhimurium LT2 STM1765 -73 5.5 TTGATTTATATCAA
Position: -280
Score: 5.4
Sequence: TTGATATAAATCAA
Locus tag: t1676
t1676 -280 5.4 TTGATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Enterobacter sp. 638 Ent638_2317 -251 5.5 TTGATATAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -268 4.9 TTGATGCAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1222 -279 5.4 TTGATGTAAATCAA
-241 4.6 TTGATATTTATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02216 -251 5.5 TTGATATAAATCAA
Proteus mirabilis HI4320 PMI3569 -235 4.5 ATGATCTGCATCAA
Salmonella typhimurium LT2 STM1766 -281 5.5 TTGATATAAATCAA
Serratia proteamaculans 568 Spro_2899 -301 5.4 TTGATGTAAATCAA
Position: -42
Score: 3.3
Sequence: TTGCTTATTAATAA
Locus tag: t1693
t1693 -42 3.3 TTGCTTATTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -150
Score: 4.8
Sequence: TTGATGCACATCAA
Locus tag: t1709
t1709 -150 4.8 TTGATGCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -74
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: t1960
t1960 -74 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -182
Score: 3.9
Sequence: TTGATACCGGACAA
Position: -96
Score: 4.2
Sequence: TCGATATATATCAG
Locus tag: t1970
t1970 -182 3.9 TTGATACCGGACAA
-96 4.2 TCGATATATATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -110
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: t1996
t1996 -110 4.4 TTGCGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Citrobacter koseri ATCC BAA-895 CKO_02206 -76 4.4 TTGCGCTAAATCAA
Enterobacter sp. 638 Ent638_1390 -110 4.4 TTGCGCTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00907 -76 4.4 TTGCGCTAAATCAA
Position: -69
Score: 4.4
Sequence: TTGACGCACATCAA
Locus tag: t2045
t2045 -69 4.4 TTGACGCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiY
Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Citrobacter koseri ATCC BAA-895 CKO_02286 -70 4.1 TTGACCTGCGTCAA
Edwardsiella tarda EIB202 ETAE_0451 -71 5.2 TTGATCAAAATCAA
Enterobacter sp. 638 Ent638_1318 -68 4.4 TTGACGCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0824 -67 4.4 TTGACGCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00858 -69 4.7 TTGATTTGCGTCAA
Salmonella typhimurium LT2 STM0844 -69 4.4 TTGACGCACATCAA
Serratia proteamaculans 568 Spro_2641 -76 5.1 TTGATCGAAATCAA
Position: -264
Score: 4.9
Sequence: ATGATATATATCAA
Locus tag: t2085
t2085 -264 4.9 ATGATATATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -146
Score: 4.8
Sequence: TTGATATATATCAT
Locus tag: t2086
t2086 -146 4.8 TTGATATATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: 10
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: t2144
t2144 10 3.6 ATGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -101
Score: 4.1
Sequence: GTGATTTTAATCAG
Locus tag: t2240
t2240 -101 4.1 GTGATTTTAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: -232
Score: 4.1
Sequence: GTGAAATAAATCAA
Locus tag: t2243
t2243 -232 4.1 GTGAAATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citC
Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Salmonella typhimurium LT2 STM0624 -182 4.1 GTGAAATAAATCAA
Position: -143
Score: 3.5
Sequence: ATAATATAAATTAA
Locus tag: t2264
t2264 -143 3.5 ATAATATAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybdN
Ortholog function: Predicted sulfotransferase
Citrobacter koseri ATCC BAA-895 CKO_02557 -295 3.8 TTAATATTGATCAG
Escherichia coli str. K-12 substr. MG1655 b0602 -359 3.7 TTGCTGACAATCAT
-150 4.2 TTGATATATAACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00647 -221 3.5 ACGATCTACATTAA
Position: -268
Score: 3.4
Sequence: TTTATTGATAATAA
Locus tag: t2417
t2417 -268 3.4 TTTATTGATAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Salmonella typhimurium LT2 STM0443 -268 3.4 TTTATTGATAATAA
Position: -347
Score: 3.3
Sequence: TTGACCGCCGTCAT
Locus tag: t2731
t2731 -347 3.3 TTGACCGCCGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -89
Score: 4.8
Sequence: TTCATATAAATCAA
Locus tag: t2742
t2742 -89 4.8 TTCATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin
Citrobacter koseri ATCC BAA-895 CKO_04064 -90 4.2 TTATTTAAAATCAA
Enterobacter sp. 638 Ent638_3182 -147 4.1 TTGACAGTAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03045 -53 3.7 TTGATATAAGCCAG
Salmonella typhimurium LT2 STM2840 -89 3.7 TCAATACAAATCAA
Position: 3
Score: 4
Sequence: TTTACCTTTATCAA
Locus tag: t2750
t2750 3 4 TTTACCTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfH
Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1240 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2488 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2521 -114 4.9 TTGATTTTTAACAA
Position: 34
Score: 3.7
Sequence: TTGACGGCAATCAG
Locus tag: t2758
t2758 34 3.7 TTGACGGCAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hypC
Ortholog function: [NiFe] hydrogenase metallocenter assembly protein HypC
Salmonella typhimurium LT2 STM2856 -88 3.7 TTGATGAAACTGAA
Position: -184
Score: 4.6
Sequence: TTGATTGAAATCAG
Locus tag: t3165
t3165 -184 4.6 TTGATTGAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcA
Ortholog function: Threonine catabolism transcriptional regulator TdcA, LysR family
Citrobacter koseri ATCC BAA-895 CKO_04518 -183 4.2 TTGACAAAAATCAT
Edwardsiella tarda EIB202 ETAE_0893 -131 3.8 TTGCTCTTTATAAA
Enterobacter sp. 638 Ent638_3565 -184 4.5 TTGATCAATATCAG
Escherichia coli str. K-12 substr. MG1655 b3118 -183 4.2 TTGACAAAAATCAG
Salmonella typhimurium LT2 STM3245 -184 4.7 TTGATTGAAATCAG
Position: -75
Score: 4
Sequence: TTGATCCAGGTCAT
Locus tag: t3246
t3246 -75 4 TTGATCCAGGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -126
Score: 3.8
Sequence: TTGATCTACATCTC
Locus tag: t3510
t3510 -126 3.8 TTGATCTACATCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: katG
Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Escherichia coli str. K-12 substr. MG1655 b3942 -141 4.4 TTAATTAAGATCAA
-126 3.8 TTGATCTACATCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01819 -248 4.1 TTGTCATATCTCAA
Salmonella typhimurium LT2 STM4106 -126 3.8 TTGATCTACATCTC
Serratia proteamaculans 568 Spro_3192 -139 3.7 TTATTTAAAATCAG
Position: -184
Score: 3.8
Sequence: TTGATTGTTAAAAA
Position: -126
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: t3557
t3557 -184 3.8 TTGATTGTTAAAAA
-126 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -122
Score: 4.1
Sequence: TTGTTTGAAATCAC
Locus tag: t3647
t3647 -122 4.1 TTGTTTGAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
Position: -110
Score: 4.7
Sequence: TTGATACCAATCAA
Locus tag: t3698
t3698 -110 4.7 TTGATACCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -120
Score: 3.9
Sequence: TTTAGTGATATCAA
Position: -116
Score: 4.1
Sequence: GTGATATCAAACAA
Locus tag: t3927
t3927 -120 3.9 TTTAGTGATATCAA
-116 4.1 GTGATATCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0048 -140 4 TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655 b3493 -116 3.8 TTGAGTGAAATCCA
Salmonella typhimurium LT2 STM3589 -116 4.2 GTGATATCAAACAA
Yersinia pestis KIM y3862 -201 4.1 TTGAATAAAATCAT
Position: -199
Score: 3.9
Sequence: TTCATTTTTATCAG
Locus tag: t3982
t3982 -199 3.9 TTCATTTTTATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Salmonella typhimurium LT2 STM3538 -199 4 TTCATTTTTATCAG
Position: 16
Score: 3.7
Sequence: TCAATAAAGATCAA
Locus tag: t3992
t3992 16 3.7 TCAATAAAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: Maltodextrin phosphorylase (EC 2.4.1.1)
Citrobacter koseri ATCC BAA-895 CKO_04838 -73 3.7 ATGAGGAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3417 -340 4 ATGATCTTAATAAA
-75 3.7 ATGAGGAAGGTCAA
Salmonella typhimurium LT2 STM3514 16 3.7 TCAATAAAGATCAA
Serratia proteamaculans 568 Spro_4636 -359 3.8 TTGCTATTGATCAC
Position: -204
Score: 4.4
Sequence: TTGAGCCATATCAA
Locus tag: t4001
t4001 -204 4.4 TTGAGCCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -72
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: t4031
t4031 -72 5.4 TTGATTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4)
Citrobacter koseri ATCC BAA-895 CKO_04789 -72 5.4 TTGATTTACATCAA
Enterobacter sp. 638 Ent638_3793 -72 5 TTGATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -71 5.3 TTGATATACATCAA
Escherichia coli str. K-12 substr. MG1655 b3365 -72 5.4 TTGATTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03752 -72 5 TTGATTTGCATCAA
Proteus mirabilis HI4320 PMI1479 -72 5.1 TTGATATTCATCAA
Salmonella typhimurium LT2 STM3474 -72 5.4 TTGATTTACATCAA
Serratia proteamaculans 568 Spro_4595 -72 5 TTGATTTGCATCAA
Yersinia pestis KIM y3945 -71 5.4 TTGATTTACATCAA
Position: -83
Score: 3.8
Sequence: TCGCTTTACCTCAA
Locus tag: t4171
t4171 -83 3.8 TCGCTTTACCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxS
Ortholog function: AraC-family transcriptional regulator
Citrobacter koseri ATCC BAA-895 CKO_03828 -83 3.8 TCGCTTTACCTCAA
Enterobacter sp. 638 Ent638_0266 -217 3.8 ATGCTTTTAATCAG
Escherichia coli str. K-12 substr. MG1655 b4062 -82 3.8 TCGCTTTACCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04462 -95 3.4 TTCTTTTCCATAAA
Salmonella typhimurium LT2 STM4265 -83 3.8 TCGCTTTACCTCAA
Position: -17
Score: 3.4
Sequence: TTGAGGTAAAGCGA
Position: -3
Score: 3.3
Sequence: TTTATGGAAAAAAA
Locus tag: t4172
t4172 -17 3.4 TTGAGGTAAAGCGA
-3 3.3 TTTATGGAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
Citrobacter koseri ATCC BAA-895 CKO_03827 -17 3.4 TTGAGGTAAAGCGA
Escherichia coli str. K-12 substr. MG1655 b4063 -17 3.4 TTGAGGTAAAGCGA
Proteus mirabilis HI4320 PMI2705 -69 3.4 TTGTATTGGGACAA
16 3.7 TAGATTTTAATCGA
Salmonella typhimurium LT2 STM4266 -17 3.4 TTGAGGTAAAGCGA
Position: -72
Score: 3.4
Sequence: TTCACACAAATCAG
Locus tag: t4208
t4208 -72 3.4 TTCACACAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -274
Score: 4.8
Sequence: TTGATTGTGATCAA
Position: -213
Score: 3.4
Sequence: ATTATAAAAATTAA
Position: -177
Score: 3.8
Sequence: CTGATGAAAATAAA
Position: -138
Score: 3.3
Sequence: TTAATTAACGACAT
Locus tag: t4211
t4211 -274 4.8 TTGATTGTGATCAA
-213 3.4 ATTATAAAAATTAA
-177 3.8 CTGATGAAAATAAA
-138 3.3 TTAATTAACGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuS
Ortholog function: Fumarate respiration sensor kinase protein DcuS
Citrobacter koseri ATCC BAA-895 CKO_03745 -199 3.3 GTGATCCCCATCAG
Enterobacter sp. 638 Ent638_2555 -122 3.7 TTTATATAGGTCAC
Erwinia amylovora ATCC 49946 EAM_1542 -115 3.4 TTGCTTAAGATCGT
Escherichia coli str. K-12 substr. MG1655 b4125 -311 3.6 TTGAGATTAAATAA
Salmonella typhimurium LT2 STM4304 -274 4.8 TTGATTGTGATCAA
-177 3.9 CTGATGAAAATAAA
Serratia proteamaculans 568 Spro_1959 -188 3.3 TTAATGGCTATCAT
Position: -25
Score: 4.4
Sequence: TTGTTAAACAACAA
Locus tag: t4376
t4376 -25 4.4 TTGTTAAACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: C4-dicarboxylate transporter DcuA
Citrobacter koseri ATCC BAA-895 CKO_03697 -25 4.4 TTGTTAAACAACAA
Citrobacter koseri ATCC BAA-895 CKO_03697 -25 4.4 TTGTTAAACAACAA
Enterobacter sp. 638 Ent638_0325 -25 3.8 TTGTTAATAAGCAA
Enterobacter sp. 638 Ent638_0325 -25 3.8 TTGTTAATAAGCAA
Erwinia amylovora ATCC 49946 EAM_0415 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0620 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04528 -25 4.5 TTGTTAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04528 -25 4.5 TTGTTAAAAAACAA
Salmonella typhimurium LT2 STM4325 -25 4.4 TTGTTAAACAACAA
Salmonella typhimurium LT2 STM4325 -25 4.4 TTGTTAAACAACAA
Position: -191
Score: 4.4
Sequence: TTAATCAAAATCAA
Locus tag: t4395
t4395 -191 4.4 TTAATCAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -282
Score: 4.4
Sequence: TTGACTAACGTCAA
Locus tag: t4564
t4564 -282 4.4 TTGACTAACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjiH
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655 b4330 -5 3.9 TTGTTATGACACAA
Salmonella typhimurium LT2 STM4514.S -283 4.4 TTGACTAACGTCAA
© 2009-2020 RegPrecise