Propagation of Fnr regulog to Candidatus Riesia pediculicola USDA

Reference regulog properties
Source regulog:	Fnr - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Energy metabolism; Anaerobic metabolism
Effector:	Oxygen
Phylum:	Gammaproteobacteria
Propagated regulon:
Target genome	Candidatus Riesia pediculicola USDA
Orthologous TF(s)	No orthologous TFs found
Regulated genes	11

Built upon 685 sites [see more]

Predicted regulatory interactions in *Candidatus Riesia pediculicola USDA*
	Locus tag	Position	Score	Sequence
Position: 7 Score: 4.1 Sequence: ATGAATCAAATCAA Locus tag: RIEPE_0113
	RIEPE_0113	7	4.1	ATGAATCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Citrobacter koseri ATCC BAA-895	CKO_03259	-133	4.6	ATGTTGTAAATCAA
Edwardsiella tarda EIB202	ETAE_0659	-165	4.5	TTGATTGTTAACAA
		-139	5	ATGATTTACATCAA
Enterobacter sp. 638	Ent638_0660	-116	4.7	CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3789	-116	4.2	GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655	b0114	-131	4.6	ATGTTGTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00118	-114	4.7	CTGATTTCAATCAA
Proteus mirabilis HI4320	PMI2046	-245	4	ATGTGTTTAATCAA
		-134	4.2	ATGATTTCGCTCAA
Salmonella typhimurium LT2	STM0152	-116	4.7	CTGATTTCAATCAA
Serratia proteamaculans 568	Spro_4011	-117	4.6	CTGATTTCGATCAA
Yersinia pestis KIM	y0767	-135	4.4	ATGATTTCGGTCAA

Position: -59 Score: 3.6 Sequence: ATGATAGCAATAAA Locus tag: RIEPE_0167
	RIEPE_0167	-59	3.6	ATGATAGCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoB
Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895	CKO_02730	-267	3.7	TTGTTGATAATTAA
Erwinia amylovora ATCC 49946	EAM_0984	-207	3.7	GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655	b0431	-241	3.7	TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00393	-49	3.7	TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3876	-336	3.8	TTGTGAGCTATCAA
Proteus mirabilis HI4320	PMI0107	9	3.6	ATGAAATACATAAA
Salmonella typhimurium LT2	STM0442	-268	3.4	TTTATTGATAATAA
Serratia proteamaculans 568	Spro_1089	-293	3.6	TTCTTTTACATTAA
Yersinia pestis KIM	y1020	-223	3.5	TTGTTTTTCCTTAA

Position: -33 Score: 4.2 Sequence: ACGATGTATATCAA Locus tag: RIEPE_0186
	RIEPE_0186	-33	4.2	ACGATGTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895	CKO_01946	-163	5.2	TTGATGTACATCAA
Edwardsiella tarda EIB202	ETAE_2070	-162	5.1	TTGATTTGAATCAA
Enterobacter sp. 638	Ent638_1624	-149	5.1	TTGATTCATATCAA
Erwinia amylovora ATCC 49946	EAM_1473	-146	4.2	TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-149	5.4	TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655	b1109	-150	5.2	TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-148	4.8	TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-150	4.2	TTGATGTTGTTCAA
Proteus mirabilis HI4320	PMI0875	-153	5.5	TTGATATAAATCAA
Salmonella typhimurium LT2	STM1211	-150	4.8	TTGATGCACATCAA
Serratia proteamaculans 568	Spro_1926	-149	5.2	TTGATGTACATCAA
Yersinia pestis KIM	y1777	-148	5.4	TTGATATATATCAA

Position: -127 Score: 4 Sequence: TTAATCCAAAACAA Locus tag: RIEPE_0228
	RIEPE_0228	-127	4	TTAATCCAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895	CKO_02438	25	3.6	ATGTGAAAAAACAA
Edwardsiella tarda EIB202	ETAE_2588	10	4
Escherichia coli str. K-12 substr. MG1655	b0721	10	3.6	ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00728	-104	3.6	ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1426	-127	4	TTGTGAAAAAACAA
Proteus mirabilis HI4320	PMI0565	-2	4	TTGTGAAAAAACAA
Salmonella typhimurium LT2	STM0732	10	3.6	ATGTGAAAAAACAA
Serratia proteamaculans 568	Spro_1263	-249	4.1	GTGATCTAAATCAC
Yersinia pestis KIM	y3071	-224	3.8	ATGTTATCAATCAG

Position: 0 Score: 3.8 Sequence: ATGATACATATAAA Locus tag: RIEPE_0231
	RIEPE_0231	0	3.8	ATGATACATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhB
Ortholog function: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895	CKO_02435	25	3.6	ATGTGAAAAAACAA
Edwardsiella tarda EIB202	ETAE_2585	10	4
Escherichia coli str. K-12 substr. MG1655	b0724	10	3.6	ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00731	-104	3.6	ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1429	-127	4	TTGTGAAAAAACAA
Proteus mirabilis HI4320	PMI0568	-2	4	TTGTGAAAAAACAA
Salmonella typhimurium LT2	STM0735	10	3.6	ATGTGAAAAAACAA
Serratia proteamaculans 568	Spro_1266	-249	4.1	GTGATCTAAATCAC
Yersinia pestis KIM	y3068	-224	3.8	ATGTTATCAATCAG

Position: -338 Score: 4.6 Sequence: TTGTGTTATATCAA Position: -29 Score: 4.2 Sequence: TTCATAAAAAACAA Locus tag: RIEPE_0532
	RIEPE_0532	-338	4.6	TTGTGTTATATCAA
		-29	4.2	TTCATAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0048	-140	4	TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655	b3493	-116	3.8	TTGAGTGAAATCCA
Salmonella typhimurium LT2	STM3589	-116	4.2	GTGATATCAAACAA
Yersinia pestis KIM	y3862	-201	4.1	TTGAATAAAATCAT

Position: -97 Score: 3.5 Sequence: TTAAATTAAATAAA Locus tag: RIEPE_0538
	RIEPE_0538	-97	3.5	TTAAATTAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638	Ent638_4063	-132	3.6	ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0092	-143	3.5	ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04217	-146	4.2	TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0075	-346	3.6	TTATGTCAAATCAA
Proteus mirabilis HI4320	PMI3036	-164	3.8	TTTATTTAAAATAA
		-85	4	ATGATTTTCATTAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Fnr regulog to Candidatus Riesia pediculicola USDA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --