Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Candidatus Riesia pediculicola USDA

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Candidatus Riesia pediculicola USDA
Orthologous TF(s) No orthologous TFs found
Regulated genes 1
Built upon 159 sites [see more]
Predicted regulatory interactions in Candidatus Riesia pediculicola USDA
Locus tag Position Score Sequence
Position: -100
Score: 4.3
Sequence: ATTAAAAAATAAATTTCATTA
Position: -17
Score: 4.2
Sequence: GTATAAAATATAATTTTATGA
Locus tag: RIEPE_0132
RIEPE_0132 -100 4.3 ATTAAAAAATAAATTTCATTA
-17 4.2 GTATAAAATATAATTTTATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT