Propagation of KdgR regulog to Escherichia coli C str. ATCC 8739

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Escherichia coli C str. ATCC 8739
Orthologous TF(s)	EcolC_1805
Regulated genes	13

Built upon 159 sites [see more]

Predicted regulatory interactions in *Escherichia coli C str. ATCC 8739*
	Locus tag	Position	Score	Sequence
Position: -86 Score: 5.3 Sequence: TAATGGAACACTGTTTTAATA Locus tag: EcolC_0191
	EcolC_0191	-86	5.3	TAATGGAACACTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Escherichia coli str. K-12 substr. MG1655	b3526	-86	5.3	TAATGGAACACTGTTTTAATA

Position: -64 Score: 5.4 Sequence: ATAAAAAACGGCGTTTCATAA Locus tag: EcolC_0610
	EcolC_0610	-64	5.4	ATAAAAAACGGCGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655	b3090	-64	5.4	ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM	y3597	-133	5.2	ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0648	-70	6.2	AAATAAAACGGCGTTTCATTT

Position: -130 Score: 6.3 Sequence: AAATGAAACATTGTTTTATTT Position: -63 Score: 5.4 Sequence: AAACGAAACAGTGTTTCACTA Locus tag: EcolC_0872
	EcolC_0872	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655	b2843	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2	STM3018	-123	6.2	AAATGAAACGTTGTTTTATTT
		-58	5.3	AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895	CKO_04220	-119	6.2	AAATGAAACAACGTTTTATTT
		-51	4.4	AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638	Ent638_3296	-127	5.4	AACTGAAACAACGTTTTAAAT
		-60	5	AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM	y1887	-201	6	TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2400	-209	6.1	AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202	ETAE_1898	-129	5.6	AATCAAAACAGCATTTCATTT

Position: -7 Score: 4.9 Sequence: ATTTGAAATGTGGTTTCACTT Locus tag: EcolC_1659
	EcolC_1659	-7	4.9	ATTTGAAATGTGGTTTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655	b1985	-7	4.9	ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2	STM2013	-7	5	TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895	CKO_00837	-7	4.9	ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02447	-40	5.1	ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638	Ent638_2574	-74	5	ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM	y2593	-158	4.8	TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568	Spro_3106	-39	5.2	ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2762	-140	5.1	AATAGAAACGTCATTTTAAAA

Position: -131 Score: 5.3 Sequence: AAATGAAATGCTGTTTTCATA Locus tag: EcolC_1928
	EcolC_1928	-131	5.3	AAATGAAATGCTGTTTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1703	-131	5.3	AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2	STM1348	-131	4.9	AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02161	-97	5.1	AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638	Ent638_1744	-107	5.3	ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568	Spro_2173	-134	5.2	ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1852	-94	5.6	TAATGAAATGGCGTTTTAATA

Position: -222 Score: 5.3 Sequence: TATGAAAACAGCATTTCATTT Locus tag: EcolC_1929
	EcolC_1929	-222	5.3	TATGAAAACAGCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655	b1702	-222	5.3	TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2	STM1349	-226	4.9	AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895	CKO_01725	-249	5.5	AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02160	-254	5.1	AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638	Ent638_1745	-249	5.3	AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568	Spro_2174	-364	5.2	AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1853	-227	5.6	TATTAAAACGCCATTTCATTA

Position: -286 Score: 5 Sequence: TTTTGAAACGCTGTTTTTGTT Locus tag: EcolC_1955
	EcolC_1955	-286	5	TTTTGAAACGCTGTTTTTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655	b1676	-286	5	TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2	STM1378	-286	4.7	TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01709	-286	5	TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02133	-285	5	ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638	Ent638_1768	-286	5.1	TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568	Spro_2187	-203	4.1	AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1867	-259	5.1	ATACGGAACGTCGTTTCAATT

Position: -35 Score: 6 Sequence: AAATGAAACGTTGTTTTAATT Locus tag: EcolC_3761
	EcolC_3761	-35	6	AAATGAAACGTTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -140 Score: 6 Sequence: AAATAAAACAGCGTTTCAATT Locus tag: EcolC_4108
	EcolC_4108	-140	6	AAATAAAACAGCGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655	b3909	-140	6	AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895	CKO_03092	-147	5.6	AAATGAAACATAGTTTTGTTA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Escherichia coli C str. ATCC 8739

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --