Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RhaS regulog to Salmonella enterica subsp. enterica serovar Typhi str. E00-7866

Reference regulog properties
Source regulog: RhaS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Orthologous TF(s) Salmoneentericaenterica_010100012693
Regulated genes 4
Built upon 31 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Locus tag Position Score Sequence
Position: -271
Score: 9.6
Sequence: TTCTTTGCATTACTGCCA-(14)-TGTCGTTATGATGAAGGT
Locus tag: Salmoneentericaenterica_010100004986
Salmoneentericaenterica_010100004986 -271 9.6 TTCTTTGCATTACTGCCA-(14)-TGTCGTTATGATGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose:proton symporter
Citrobacter koseri ATCC BAA-895 CKO_03094 -126 8.5 ATAACGTGCTGGTTGCCA-(15)-CGGCAATCCTCAAAAGGT
Enterobacter sp. 638 Ent638_4064 -127 8.3 TTAACGCGTTGATTGCCA-(15)-CGGCAACCTTCTGAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0450 -171 8.4 ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Escherichia coli str. K-12 substr. MG1655 b3907 -123 9.3 TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04216 -127 8.6 TTAAGCCCATGGTTGCCA-(15)-TGGCAACGTCCTGAAGGC
Salmonella typhimurium LT2 STM4050 -271 9.7 TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT
-127 7.8 TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT
Yersinia pestis KIM y0593 -149 9.3 ACCTACTGAATTTTGCCA-(15)-AGGCAGTCAGCCGAAGGT
Position: -106
Score: 10.7
Sequence: ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Locus tag: Salmoneentericaenterica_010100007461
Salmoneentericaenterica_010100007461 -106 10.7 ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Salmonella typhimurium LT2 STM4054 -106 10.7 ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Position: -232
Score: 10.5
Sequence: ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Locus tag: Salmoneentericaenterica_010100012693
Salmoneentericaenterica_010100012693 -232 10.5 ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon transcriptional activator RhaS, AraC family
Citrobacter koseri ATCC BAA-895 CKO_03099 -245 10.5 ACCTTCCTGTTACTGACA-(15)-TGGCAAGGAGGCAAAGGT
Enterobacter sp. 638 Ent638_4066 -245 9.1 ACCTTCTCGCCACTGACA-(15)-TGGCAAGGAATCAAAGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0441 -262 9.8 ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Escherichia coli str. K-12 substr. MG1655 b3905 -232 10.3 ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04214 -255 10.1 ACCTTCTCGTTACGGACA-(15)-TGGCAAGAAAGCAAAGGT
Salmonella typhimurium LT2 STM4048 -232 10.5 ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Yersinia pestis KIM y0590 -265 10.2 ACCTTCTCATCACTGCCA-(15)-TGGCAGAATGACGAAAGT
Position: -146
Score: 11.1
Sequence: CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
Locus tag: Salmoneentericaenterica_010100025993
Salmoneentericaenterica_010100025993 -146 11.1 CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN2
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Salmonella typhimurium LT2 STM1911 -146 11.1 CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
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