Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RbsR regulog to Escherichia coli O111:H- str. 11128

Reference regulog properties
Source regulog: RbsR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli O111:H- str. 11128
Orthologous TF(s) ECO111_4587
Regulated genes 1
Built upon 17 sites [see more]
Predicted regulatory interactions in Escherichia coli O111:H- str. 11128
Locus tag Position Score Sequence
Position: -31
Score: 7
Sequence: TCAGCGAAACGTTTCGCTGA
Locus tag: ECO111_4582
ECO111_4582 -31 7 TCAGCGAAACGTTTCGCTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Escherichia coli str. K-12 substr. MG1655 b3748 -31 7 TCAGCGAAACGTTTCGCTGA
Salmonella typhimurium LT2 STM3881 -111 6.2 CTAGCGAAACGTTTCGACGG
-32 7.1 CCAGCGAAACGTTTCGCTAG
Citrobacter koseri ATCC BAA-895 CKO_00088 -155 7.1 CCAGCGAAACGTTTCGCTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04153 -116 6.2 CTCGCGAAACGTTTCGATGG
-38 7.1 TTAGCGAAACGTTTCGCTAG
Enterobacter sp. 638 Ent638_4116 -32 7.1 TCAGCGAAACGTTTCGCTAG
Erwinia amylovora ATCC 49946 EAM_0015 -108 6.5 CCAGCAAAACGTTTCGATGG
-30 6.1 CTGGCGAAACGTTTCGCTGT
Serratia proteamaculans 568 Spro_4901 -117 6.8 CCAGCGAAACGTTTCGATAG
-37 6.9 CAAGCGAAACGTTTCGCTGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0010 -109 6.8 TTAGCGAAACGTTTCGATGG
-32 7.1 TTAGCGAAACGTTTCGCTGG
Edwardsiella tarda EIB202 ETAE_3516 -31 7 ATAGCGAAACGTTTCGCTGG
Proteus mirabilis HI4320 PMI0093 -30 7 ACAGCGAAACGTTTCGCTGA
Photorhabdus luminescens subsp. laumondii TTO1 plu0055 -110 6.2 TTATCGAAACGTTTCGATAG
-32 6.9 ATAGCGAAACGTTTCGCTAA
© 2009-2020 RegPrecise