Propagation of KdgR regulog to Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Source regulog: | KdgR - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | IclR |
Regulation mode: | repressor (activator) |
Biological process: | Pectin and polygalacturonate utlization |
Effector: | 2-keto-3-deoxygluconate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 |
Orthologous TF(s) | Salmentericaenterica_010100002385 |
Regulated genes | 8 |
Locus tag | Position | Score | Sequence | |
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Position: -231
Score: 5.4 Sequence: TTATGAAACATTGTTTCAGAT
Locus tag: Salmentericaenterica_010100001715
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Salmentericaenterica_010100001715 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: tpfX | ||||
Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
Position: -32
Score: 5.7 Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: Salmentericaenterica_010100015497
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Salmentericaenterica_010100015497 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
Position: -126
Score: 4.7 Sequence: ATGTGAAACAGGGTTTCAAAA
Locus tag: Salmentericaenterica_010100018328
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Salmentericaenterica_010100018328 | -126 | 4.7 | ATGTGAAACAGGGTTTCAAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rhiA | ||||
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
Salmonella typhimurium LT2 | STM4054 | -126 | 4.7 | ATGTGAAACAGGGTTTCAAAA |
Position: -34
Score: 5.8 Sequence: AAATAAAACATTATTTTAATT
Locus tag: Salmentericaenterica_010100019405
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Salmentericaenterica_010100019405 | -34 | 5.8 | AAATAAAACATTATTTTAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgX | ||||
Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
Position: -286
Score: 4.7 Sequence: TTTTGAAACAGGGTTTTCATT
Locus tag: Salmentericaenterica_010100022169
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Salmentericaenterica_010100022169 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pykF | ||||
Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
Position: -226
Score: 4.9 Sequence: AATGAAAAGTGTGTTTCATTT
Locus tag: Salmentericaenterica_010100022334
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Salmentericaenterica_010100022334 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsA | ||||
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
Position: -131
Score: 4.9 Sequence: AAATGAAACACACTTTTCATT
Locus tag: Salmentericaenterica_010100022344
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Salmentericaenterica_010100022344 | -131 | 4.9 | AAATGAAACACACTTTTCATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsR | ||||
Ortholog function: PEP synthetase regulatory protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |