Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Pantoea ananatis LMG 20103

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Pantoea ananatis LMG 20103
Orthologous TF(s) PANA_1992
Regulated genes 38
Built upon 685 sites [see more]
Predicted regulatory interactions in Pantoea ananatis LMG 20103
Locus tag Position Score Sequence
Position: -190
Score: 4
Sequence: GTGATTTAGATCAC
Locus tag: PANA_0187
PANA_0187 -190 4 GTGATTTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysgA
Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Citrobacter koseri ATCC BAA-895 CKO_00172 -133 4.1 GTGATTTACATCAC
Erwinia amylovora ATCC 49946 EAM_0199 -199 3.6 TTAATCAAAATGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0184 -155 3.8 GTGACTTAAATCAC
Salmonella typhimurium LT2 STM3967 -169 4.2 ATGACGTAAAACAA
Serratia proteamaculans 568 Spro_0243 -174 3.8 TTAATGCAGGTCAA
Yersinia pestis KIM y0443 -296 4.2 GTGATTTAAATCAC
Position: -211
Score: 3.5
Sequence: TTGTTTCTGAACAT
Locus tag: PANA_0300
PANA_0300 -211 3.5 TTGTTTCTGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: KPN_02084
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02084 -326 3.4 GTGATACAAGTCAC
Position: -216
Score: 4.1
Sequence: TTTATTTAAGTCAG
Locus tag: PANA_0383
PANA_0383 -216 4.1 TTTATTTAAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -98
Score: 4.1
Sequence: TTGCTTCAGGTCAA
Locus tag: PANA_0474
PANA_0474 -98 4.1 TTGCTTCAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -282
Score: 5.1
Sequence: TTGATATAAGTCAA
Locus tag: PANA_0653
PANA_0653 -282 5.1 TTGATATAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -250
Score: 3.8
Sequence: GTGATTAAAGTCAG
Locus tag: PANA_0991
PANA_0991 -250 3.8 GTGATTAAAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Erwinia amylovora ATCC 49946 EAM_0985 -207 3.7 GTTATTTAAATCAG
Position: -270
Score: 3.7
Sequence: GTAATTTACGTCAA
Locus tag: PANA_1221
PANA_1221 -270 3.7 GTAATTTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: 34
Score: 3.8
Sequence: TTGATATGGCTCAG
Locus tag: PANA_1225
PANA_1225 34 3.8 TTGATATGGCTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaE
Ortholog function: Molybdenum cofactor biosynthesis protein MoaE
Citrobacter koseri ATCC BAA-895 CKO_02341 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2344 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1277 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1222 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2813 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0785 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00814 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1502 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0806 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1324 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3019 -222 3.7 GTGATGATCAACAA
Position: -73
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: PANA_1348
PANA_1348 -73 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -144
Score: 5.2
Sequence: TTGATGTACATCAA
Locus tag: PANA_1499
PANA_1499 -144 5.2 TTGATGTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -70
Score: 3.4
Sequence: ATGATTTGACGCAA
Locus tag: PANA_1509
PANA_1509 -70 3.4 ATGATTTGACGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -195
Score: 3.4
Sequence: CTGTCTGAAATCAT
Position: -34
Score: 4
Sequence: TTGACCGCAGTCAA
Locus tag: PANA_1992
PANA_1992 -195 3.4 CTGTCTGAAATCAT
-34 4 TTGACCGCAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -158
Score: 5.1
Sequence: TTGATTTGAATCAA
Locus tag: PANA_2072
PANA_2072 -158 5.1 TTGATTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -213
Score: 4.9
Sequence: TTGATCTAAATCAT
Locus tag: PANA_2089
PANA_2089 -213 4.9 TTGATCTAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -149
Score: 4
Sequence: TCTTTTTAAATCAA
Locus tag: PANA_3471
PANA_3471 -149 4 TCTTTTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcB
Ortholog function: Threonine dehydratase, catabolic (EC 4.3.1.19)
Citrobacter koseri ATCC BAA-895 CKO_04517 -183 4.2 TTGACAAAAATCAT
Edwardsiella tarda EIB202 ETAE_0894 -131 3.8 TTGCTCTTTATAAA
Enterobacter sp. 638 Ent638_3564 -184 4.5 TTGATCAATATCAG
Escherichia coli str. K-12 substr. MG1655 b3117 -183 4.2 TTGACAAAAATCAG
Salmonella typhimurium LT2 STM3244 -184 4.7 TTGATTGAAATCAG
Position: -245
Score: 3.8
Sequence: TAGATATTCAACAA
Locus tag: PANA_3804
PANA_3804 -245 3.8 TAGATATTCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgM
Ortholog function: Fumarylacetoacetate hydrolase family protein
Enterobacter sp. 638 Ent638_3376 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2575 -93 3.8 TTGAGCCAAATAAA
Position: -111
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: PANA_3869
PANA_3869 -111 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -129
Score: 3.4
Sequence: TTGTCCGTCATCAT
Locus tag: PANA_4114
PANA_4114 -129 3.4 TTGTCCGTCATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuS
Ortholog function: Fumarate respiration sensor kinase protein DcuS
Citrobacter koseri ATCC BAA-895 CKO_03745 -199 3.3 GTGATCCCCATCAG
Enterobacter sp. 638 Ent638_2555 -122 3.7 TTTATATAGGTCAC
Erwinia amylovora ATCC 49946 EAM_1542 -115 3.4 TTGCTTAAGATCGT
Escherichia coli str. K-12 substr. MG1655 b4125 -311 3.6 TTGAGATTAAATAA
Salmonella typhimurium LT2 STM4304 -274 4.8 TTGATTGTGATCAA
-177 3.9 CTGATGAAAATAAA
Serratia proteamaculans 568 Spro_1959 -188 3.3 TTAATGGCTATCAT
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