Propagation of Crp regulog to Pantoea ananatis LMG 20103

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Pantoea ananatis LMG 20103
Orthologous TF(s)	PANA_3653
Regulated genes	173

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Pantoea ananatis LMG 20103*
	Locus tag	Position	Score	Sequence
Position: -183 Score: 4.8 Sequence: TTATGTGATCTAAAGCACGCTT Locus tag: PANA_0020
	PANA_0020	-183	4.8	TTATGTGATCTAAAGCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -220 Score: 4 Sequence: ATTTATGAGCGCGATCGAAAAT Position: -133 Score: 4.2 Sequence: TTTTGCGAGCAAGTGCACAATA Locus tag: PANA_0039
	PANA_0039	-220	4	ATTTATGAGCGCGATCGAAAAT
		-133	4.2	TTTTGCGAGCAAGTGCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655	b3565	-224	3.9	ATTTATGACCGAGATCTTACTT
		-134	4.2	TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2	STM3661	-260	3.9	TTATGCGAAATTCATCACAGCA
		-133	4.4	TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895	CKO_05021	-214	4.1	AATTATGACCGAGATCGTACTT
		-122	4.2	TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03929	-234	4.1	TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638	Ent638_0156	-231	3.8	ATTTATGACCGTGATCTGATTT
		-135	3.9	TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM	y4057	-220	4.6	TTATGAGATCTACACCACAATT
Serratia proteamaculans 568	Spro_0098	-222	3.9	TTTTATGATGGCGGTCATGCTT
		-129	4.6	TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0097	-223	4.7	TTTTTTGATGCGGGTCATATTT
		-135	4.4	TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2275	-251	4.6	ATTTATGAGATAAATCACACAA

Position: -234 Score: 4.4 Sequence: TATTGTGCACTTGCTCGCAAAA Position: -147 Score: 4 Sequence: ATTTTCGATCGCGCTCATAAAT Locus tag: PANA_0040
	PANA_0040	-234	4.4	TATTGTGCACTTGCTCGCAAAA
		-147	4	ATTTTCGATCGCGCTCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Escherichia coli str. K-12 substr. MG1655	b3566	-253	4.2	AAGTGTGCGCTCGCTCGCAAAA
		-163	3.7	AAGTAAGATCTCGGTCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_05022	-254	4.1	AAGTGTGCGCCGCCTCGCAAAA
		-162	3.8	AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03930	-234	3.8	AAATACGATCGCCGTCATAATT
Enterobacter sp. 638	Ent638_0155	-264	3.9	AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM	y4056	-264	4.8	AATTGTGGTGTAGATCTCATAA
		-160	4.2	AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568	Spro_0099	-259	4.4	AAATGTGCGACAGATCTCATAA
		-166	3.7	AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0098	-272	4.5	AAATATGACCCGCATCAAAAAA

Position: -55 Score: 4.2 Sequence: CAATGTGAGCTGAATCGCGCTA Locus tag: PANA_0086
	PANA_0086	-55	4.2	CAATGTGAGCTGAATCGCGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yidA
Ortholog function: Phosphatase YidA
Yersinia pestis KIM	y4109	-57	4.1	ATTTGTGTGCTGAATCGCGTTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4428	-228	3.8	TTACGTTATACCCGTCATACTT

Position: -293 Score: 5.1 Sequence: AATTGTGATCTTAGTCTCATTT Position: -249 Score: 4.9 Sequence: AAATGTGATCGCAATCACTATA Position: -132 Score: 5.4 Sequence: AAATGTGACCTAAATCACACTA Locus tag: PANA_0112
	PANA_0112	-293	5.1	AATTGTGATCTTAGTCTCATTT
		-249	4.9	AAATGTGATCGCAATCACTATA
		-132	5.4	AAATGTGACCTAAATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b3599	-206	4.5	TTTTGTGATGAACGTCACGTCA
		-162	5.4	TTATGTGATTGATATCACACAA
		-113	3.3	TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2	STM3685	-207	4.8	CTTTGTGATCAATATCACATCA
		-163	5.4	TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_05054	-203	5.2	TTTTGTGATCAATATCACATCA
		-159	5	TCATGTGATCCAAATCACACAA
		-110	3.4	TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03942	-208	4.9	TTTTGTGATCATCATCACTAAA
		-164	5.2	TCATGTGATCCAAATCACATAA
		-115	3.4	TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638	Ent638_0136	-224	3.4	TATTTTTTTCATACTCTCATTT
		-205	4.8	TTTTGTGATGGCGATCACCTCA
		-161	5.1	TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946	EAM_3416	-229	3.3	CATTGCGAATATCTTTACACTT
		-210	3.9	CTTCGTGACTCATGTCACTAAA
		-166	4.8	TTAAGTGACCCGCATCACACTT
		-95	3.2	CGTTTTGATCGTGATCCCTCAA
		-34	3.5	ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM	y4087	-223	4.6	AGATGTGATCTTAATCAACAAA
		-179	4.5	TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568	Spro_0072	-195	5.2	AAATGTGATGTATATCACTATA
		-151	4.5	GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0087	-230	5.1	TTTTGTGAAGTAAATCACCTAT
		-186	4.5	TTGTGTGATTTTTGTCACGTTG

Position: -204 Score: 3.7 Sequence: ATTTATGACCTGTGTAGCAGAA Locus tag: PANA_0121
	PANA_0121	-204	3.7	ATTTATGACCTGTGTAGCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: dipeptide ABC transporter, substrate-binding protein
Citrobacter koseri ATCC BAA-895	CKO_04994	-121	3.8	TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03899	-62	4	ATATGCAAACAACATCACAATT
Yersinia pestis KIM	y3825	-211	3.9	AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568	Spro_0138	-271	3.8	TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1	plu0300	-223	3.7	AAATGTGCGCATTGTCATGTTT

Position: -138 Score: 4 Sequence: AAATTTGTCATTCATCACAGTA Locus tag: PANA_0182
	PANA_0182	-138	4	AAATTTGTCATTCATCACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -131 Score: 5.2 Sequence: ATGTGTGATCTAAATCACCTTA Position: -79 Score: 4.5 Sequence: TTAAGTGAATTTAGTCACATAT Locus tag: PANA_0188
	PANA_0188	-131	5.2	ATGTGTGATCTAAATCACCTTA
		-79	4.5	TTAAGTGAATTTAGTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: 18 Score: 3.2 Sequence: AACAGTGAATTACTTTTCAGTA Locus tag: PANA_0233
	PANA_0233	18	3.2	AACAGTGAATTACTTTTCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655	b4014	-117	3.6	AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2	STM4183	-168	3.3	TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895	CKO_03906	-166	3.3	TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM	y0015	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4503	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3991	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2764	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4396	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -181 Score: 5.3 Sequence: TAGTGTGACCCACATCACATTA Locus tag: PANA_0280
	PANA_0280	-181	5.3	TAGTGTGACCCACATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4060	-149	5.7	AATTGTGATATAGTTCACAAAA
Salmonella typhimurium LT2	STM4263	-149	5.7	TTTTGTGATATAGTTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03830	-150	5.7	TATTGTGATATAGTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04460	-143	5.4	AAGTGTGATATAGTTCACACAA
Enterobacter sp. 638	Ent638_0263	-82	5.3	AAACGTGATATAGTTCACACAT
Serratia proteamaculans 568	Spro_2355	-81	5	CAATGTGACGCAGATCACACTA

Position: -179 Score: 5.2 Sequence: TATTGTGACAAACATCACAATA Position: -127 Score: 3.6 Sequence: AAATGTGACCAAAAGCTATTTT Locus tag: PANA_0306
	PANA_0306	-179	5.2	TATTGTGACAAACATCACAATA
		-127	3.6	AAATGTGACCAAAAGCTATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor
Escherichia coli str. K-12 substr. MG1655	b0411	-250	3.7	TTTTGTTACTCTGCTTACATCA
		-129	3.9	AACTGTGAAACGAAACATATTT
Salmonella typhimurium LT2	STM0413	-129	4	ATATGTGAAACAAGACATATTT
Citrobacter koseri ATCC BAA-895	CKO_02750	-131	3.7	ATCTGTGAAACAAGACATATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00363	-131	3.8	TTATGTGAAACAACACGTATTT
Enterobacter sp. 638	Ent638_0879	-124	4.1	ATATGTGAAACAACACATATTT
Erwinia amylovora ATCC 49946	EAM_2589	-218	5.3	ATTTGTGATAAAAATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3796	-172	5.5	TTATGTGATTAAAATCACATAA
Edwardsiella tarda EIB202	ETAE_2935	-245	4.6	TAATTTGATGAGAATCTCAATT

Position: -108 Score: 4 Sequence: TGCTGTGAGGCAGTTCACTCAT Locus tag: PANA_0331
	PANA_0331	-108	4	TGCTGTGAGGCAGTTCACTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: beta-D-galactosidase
Escherichia coli str. K-12 substr. MG1655	b0344	-110	4.7	TAATGTGAGTTAGCTCACTCAT
Citrobacter koseri ATCC BAA-895	CKO_02825	-110	4.4	TTGTGTGAGTCAGTTCACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_pKPN3p05871	-109	4.6	TAATGTGAGTCAGCTCACTCAT
Enterobacter sp. 638	Ent638_0928	-100	4.4	TTTTGTGATCGACTTCGCTTTG
Erwinia amylovora ATCC 49946	EAM_0926	-94	3.8	TGTTGCGATAGCCATCACATCC
Yersinia pestis KIM	y1817	-168	4	ACATGTGCGACAGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1490	-149	4.1	CTTTGTGATCGCTTCCACTTTA
		-92	4.5	ATATGTTATGGAAAACACAAAT

Position: -46 Score: 5.2 Sequence: ATTTGTGAGCAATTTCACATAT Locus tag: PANA_0398
	PANA_0398	-46	5.2	ATTTGTGAGCAATTTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655	b4139	-206	4.5	AGCGGTGATCTATTTCACAAAT
		-156	4.2	TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2	STM4326	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03696	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04529	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0326	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0416	-228	4.2	CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM	y0606	-224	4.6	AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568	Spro_0406	-205	4.7	AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0621	-272	4	ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202	ETAE_0311	-197	4.4	ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320	PMI2546	-206	4.1	ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4137	-274	3.8	AGATATAATTGGGGTCACAGTT
		-211	5.6	AATTGTGATAAATATCACATAT

Position: -153 Score: 5.1 Sequence: ATATGTGAAATTGCTCACAAAT Locus tag: PANA_0399
	PANA_0399	-153	5.1	ATATGTGAAATTGCTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -303 Score: 4.5 Sequence: CACAGTGATACAGTTCACATTT Locus tag: PANA_0418
	PANA_0418	-303	4.5	CACAGTGATACAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655	b3212	-199	4.2	AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2	STM3330	-288	3.7	ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638	Ent638_3656	-298	3.9	GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202	ETAE_0527	-278	4.9	AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4009	-241	4	ATATTTGACCTGATTTATATTT

Position: -112 Score: 3.7 Sequence: TTTTGTTATAAACGTTGCACAA Locus tag: PANA_0420
	PANA_0420	-112	3.7	TTTTGTTATAAACGTTGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtgA
Ortholog function: monofunctional biosynthetic peptidoglycan transglycosylase
Escherichia coli str. K-12 substr. MG1655	b3208	-91	3.7	ATTTGTTACATGAATCAGTTAA
		-69	4	ATGTGTGATGCGTACCATTTTT
Salmonella typhimurium LT2	STM3326	-91	3.9	ATTTGTTACATGAATCATTTAA
		-69	3.6	ATGTGTGAAGCGTAGCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_04611	-92	3.7	TTTTGTTACATGAATCAGTTAA
		-70	3.6	ATGTGTGAAGCGCAGCATTTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03617	-93	3.6	ATTTGTTACATGAATCAGTAAA
		-71	3.8	ATATGTGAAGCATAGCGAGTTA
Erwinia amylovora ATCC 49946	EAM_3109	-38	3.6	GATTTTTACGCAGATCGCAATT
Serratia proteamaculans 568	Spro_4340	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0317	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Proteus mirabilis HI4320	PMI3680	-174	4.1	TTTTTTGATTATCATTACATAG

Position: -90 Score: 4.8 Sequence: TAATTTGAGCCGGTTCACACTT Locus tag: PANA_0463
	PANA_0463	-90	4.8	TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -254 Score: 4.2 Sequence: TTCTGTGAAAAACATCTCAAAA Locus tag: PANA_0654
	PANA_0654	-254	4.2	TTCTGTGAAAAACATCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjtD
Ortholog function: RNA methyltransferase, TrmH family, group 1
Salmonella typhimurium LT2	STM4600	-97	3.6	TTCAGTGATATCAGTTAAAATT
Citrobacter koseri ATCC BAA-895	CKO_03386	-222	3.7	AGGTGTGATTCATTCTAAATTA
		-53	4.2	TATGTTGACATTGGTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04857	-94	4	TTTAGTGATTTTTGTTGCAAAT
Enterobacter sp. 638	Ent638_0563	-54	4.3	TATGTTGAGGTGGATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3892	-83	3.7	AATCGTGATCGATTACACGTCC

Position: -96 Score: 4.7 Sequence: TAGTGTGATCCGGCACGCATTT Locus tag: PANA_0731
	PANA_0731	-96	4.7	TAGTGTGATCCGGCACGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaE
Ortholog function: dephospho-CoA kinase
Erwinia amylovora ATCC 49946	EAM_0727	-75	4.4	TCGTGTGATCTGCGCCACATTA
Yersinia pestis KIM	y0757	-259	3.8	AAATGTGATCGGGCGTAAAACA
Serratia proteamaculans 568	Spro_0774	-158	3.8	CAGTGTGACCGCCCGCTCATTT
Edwardsiella tarda EIB202	ETAE_0650	-272	4	AAATGTGATCATACAAACGATT
Proteus mirabilis HI4320	PMI2052	-80	3.8	TCTTGTGATAAAAATCAGTTTA

Position: -105 Score: 5.1 Sequence: ATTTGTGATCTATATAAAATAT Locus tag: PANA_0838
	PANA_0838	-105	5.1	ATTTGTGATCTATATAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srlA
Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b2702	-93	4.4	TTTTGCGATCAAAATAACACTT
Salmonella typhimurium LT2	STM2832	-93	4.3	TTTTGCGATCACAATAACACTT
Citrobacter koseri ATCC BAA-895	CKO_04056	-93	4.3	TTTTGAGATCAAAATAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03037	-92	4.6	TTTTGCGATCCATTTAACACTT
Serratia proteamaculans 568	Spro_3569	-110	4.9	AATTGTGATCTATTTAAAACAA

Position: -80 Score: 3.8 Sequence: CTTTGTGTTGCAAATCGCAACA Locus tag: PANA_0983
	PANA_0983	-80	3.8	CTTTGTGTTGCAAATCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02992	-81	4.1	TTATGTGTTGCAAATCGCAACA
Serratia proteamaculans 568	Spro_2411	-76	3.4	TTTTGTGTCCCATGTCGCAACG

Position: -216 Score: 4 Sequence: TGTTGCGATTTGCAACACAAAG Locus tag: PANA_0984
	PANA_0984	-216	4	TGTTGCGATTTGCAACACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldB
Ortholog function: Aldehyde dehydrogenase B (EC 1.2.1.22)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02991	-205	4.4	TGTTGCGATTTGCAACACATAA
Serratia proteamaculans 568	Spro_2410	-225	3.5	CGTTGCGACATGGGACACAAAA

Position: -135 Score: 4 Sequence: ATCTGTGACACCCTTAGCAAAA Locus tag: PANA_0991
	PANA_0991	-135	4	ATCTGTGACACCCTTAGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Erwinia amylovora ATCC 49946	EAM_0985	-134	4	AGTTGTGACAGCGTTTGCAAAA

Position: -92 Score: 4.4 Sequence: CAGTGAGATCTGCATCACACTT Locus tag: PANA_1091
	PANA_1091	-92	4.4	CAGTGAGATCTGCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655	b2841	-131	4.4	AATTGGAATATCCATCACATAA
Salmonella typhimurium LT2	STM3016	-271	4	TTTTATGATCTCATTAGCATAG
		-131	4.9	AAGTGTAATATCCATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03264	-191	4.4	AAGTTTAATGTCCATCACAAAA
Enterobacter sp. 638	Ent638_3294	-209	3.7	CGAGATGACATCGATCACATTT
		-130	4.1	AATTGGAATATCCATCACAGAA

Position: -113 Score: 4.2 Sequence: AATAGCGATATTTATCACTTTT Locus tag: PANA_1114
	PANA_1114	-113	4.2	AATAGCGATATTTATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655	b0623	-114	4	TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2	STM0629	-114	4.3	TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_02534	-21	4.3	TAACGCGATATTTATCACTTTT
Enterobacter sp. 638	Ent638_1159	-114	3.8	TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946	EAM_1116	-113	3.6	AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1294	-113	3.9	TTTAGCGACTTTTATCACTTTT

Position: -210 Score: 4 Sequence: AAACGTGAGAATGATCACTGTT Locus tag: PANA_1171
	PANA_1171	-210	4	AAACGTGAGAATGATCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -23 Score: 4.1 Sequence: ATTTGTGACAAAGACTACACTT Locus tag: PANA_1230
	PANA_1230	-23	4.1	ATTTGTGACAAAGACTACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhP
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b0790	-56	4.2	TTTTGTGACGCCGACTACACTA
Salmonella typhimurium LT2	STM0813	-56	4	TTTTGTGACGACGACTACACTA
Citrobacter koseri ATCC BAA-895	CKO_02337	-56	4	TTTTGTGACGACGACTACACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00818	-56	4.2	TTTTGTGACGTCTACTACACTA
Enterobacter sp. 638	Ent638_1281	-57	4.2	TTTTGTGACGCCGACTACACTT

Position: -140 Score: 4 Sequence: AAGTGTAGTCTTTGTCACAAAT Locus tag: PANA_1231
	PANA_1231	-140	4	AAGTGTAGTCTTTGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhQ
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b0791	-98	3.9	TAGTGTAGTCGGCGTCACAAAA
Salmonella typhimurium LT2	STM0814	-98	3.8	TAGTGTAGTCGTCGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_02336	-153	3.8	TAGTGTAGTCGTCGTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00819	-97	3.8	TAGTGTAGTAGACGTCACAAAA
Enterobacter sp. 638	Ent638_1282	-98	3.9	AAGTGTAGTCGGCGTCACAAAA

Position: -131 Score: 4.1 Sequence: ACACGCGACCTGTATCACAAAA Position: -102 Score: 4 Sequence: TAGCGTTAACTACCTCAAATTT Locus tag: PANA_1332
	PANA_1332	-131	4.1	ACACGCGACCTGTATCACAAAA
		-102	4	TAGCGTTAACTACCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -158 Score: 4.1 Sequence: AAATTTGAGGTAGTTAACGCTA Position: -129 Score: 4.1 Sequence: TTTTGTGATACAGGTCGCGTGT Locus tag: PANA_1333
	PANA_1333	-158	4.1	AAATTTGAGGTAGTTAACGCTA
		-129	4.1	TTTTGTGATACAGGTCGCGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -81 Score: 4.1 Sequence: AAATGTGACCGGTGTTAGATTT Locus tag: PANA_1350
	PANA_1350	-81	4.1	AAATGTGACCGGTGTTAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655	b0907	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0977	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02165	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00935	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1427	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2784	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2594	-78	3.5	AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320	PMI0711	-119	3.5	TATTTTTGTGTGCTACACATAA

Position: -228 Score: 4.8 Sequence: AATTTTGATATGACTCACAAAG Locus tag: PANA_1371
	PANA_1371	-228	4.8	AATTTTGATATGACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: Outer membrane protein F precursor
Escherichia coli str. K-12 substr. MG1655	b0929	-242	4.4	AAATATGACGGTGTTCACAAAG

Position: -316 Score: 3.8 Sequence: AAATGAGATTTATCTCAAGCAG Position: -151 Score: 4.2 Sequence: ATAAGTGCCTCACATCACACTT Locus tag: PANA_1393
	PANA_1393	-316	3.8	AAATGAGATTTATCTCAAGCAG
		-151	4.2	ATAAGTGCCTCACATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompA
Ortholog function: outer membrane protein A
Escherichia coli str. K-12 substr. MG1655	b0957	-188	4	ATGCCTGACGGAGTTCACACTT
Salmonella typhimurium LT2	STM1070	-188	4.3	ATGTCTGACGGAGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02111	-164	4	ATGCCTGACGGAGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00986	-185	3.9	ATGCCTGACAGAGTTCACACTT
Enterobacter sp. 638	Ent638_1469	-189	4	ATGCCTGACGGAGTTCACACTT
Serratia proteamaculans 568	Spro_1754	-195	3.8	TTTTTAGAGCTTTATCACATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1751	-200	3.9	TCTTATGACACAAATCACATCA
Edwardsiella tarda EIB202	ETAE_1267	-196	3.7	TTTGGTGAGCATAATCACATCG

Position: -148 Score: 4.5 Sequence: AAATTTGATGTACATCAATTTT Locus tag: PANA_1499
	PANA_1499	-148	4.5	AAATTTGATGTACATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -101 Score: 4.9 Sequence: TTATGTGAGTTAGTGCACAAAT Locus tag: PANA_1636
	PANA_1636	-101	4.9	TTATGTGAGTTAGTGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -62 Score: 3.9 Sequence: TATTGTGACCATCATCACTTCC Locus tag: PANA_1708
	PANA_1708	-62	3.9	TATTGTGACCATCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -262 Score: 3.6 Sequence: CTTTTTTATTGTCTTCATAATA Position: -56 Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA Locus tag: PANA_1721
	PANA_1721	-262	3.6	CTTTTTTATTGTCTTCATAATA
		-56	3.6	TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b1677	-56	3.6	TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2	STM1377	-56	3.6	TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895	CKO_01710	-56	3.6	TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02134	-56	3.6	TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638	Ent638_1767	-56	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946	EAM_1656	-56	3.6	TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568	Spro_2186	-55	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1866	-56	3.6	TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202	ETAE_1852	-55	3.6	TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320	PMI1409	-200	4.4	TTTTGTGAAATAACACGCATTT

Position: -21 Score: 3.6 Sequence: AATTATTAATGCATTCACCTTT Locus tag: PANA_1732
	PANA_1732	-21	3.6	AATTATTAATGCATTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1654	-132	3.6	ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638	Ent638_1793	-186	3.6	TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946	EAM_1665	-145	3.9	AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320	PMI1394	-292	3.6	TAATGTGCATTTATACACTTAT

Position: -315 Score: 4.2 Sequence: GGATGTGCTGGAAATCACAAAA Position: -97 Score: 4.2 Sequence: TTTTGTGAAGCGTGTCGCCCTA Locus tag: PANA_1789
	PANA_1789	-315	4.2	GGATGTGCTGGAAATCACAAAA
		-97	4.2	TTTTGTGAAGCGTGTCGCCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655	b4227	-98	3.7	AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895	CKO_03603	-130	3.7	AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM	y0328	-229	3.8	TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568	Spro_4768	-163	4.3	TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4236	-68	3.7	TATTGTTAGCCTACTTACCATA

Position: -126 Score: 3.9 Sequence: ACTTTTGCAATGGATCACAATT Locus tag: PANA_1824
	PANA_1824	-126	3.9	ACTTTTGCAATGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946	EAM_1697	-131	4.1	ACATATGAAGGCCATCACATAA
Yersinia pestis KIM	y2095	-146	4.3	ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568	Spro_2244	-132	3.9	ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2274	-133	3.9	ACCTTTGACCAGCTTCACAAAA

Position: -261 Score: 4.2 Sequence: AATTGTGATCCATTGCAAAAGT Position: -188 Score: 4 Sequence: AGATGTGATACCGCTCTACATT Locus tag: PANA_1825
	PANA_1825	-261	4.2	AATTGTGATCCATTGCAAAAGT
		-188	4	AGATGTGATACCGCTCTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655	b1901	-163	4.2	CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895	CKO_01050	-164	4	CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02396	-161	4	CGATGTGATAATGCTCTCGTAT
		-72	3.6	TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638	Ent638_2476	-162	3.7	CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946	EAM_1698	-251	4.3	TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM	y2096	-283	4.3	TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568	Spro_2245	-251	3.8	TTTTGTGACGGCTGTCATAAGT

Position: -140 Score: 4 Sequence: AAAAGCGAGTCTAATCACACTT Locus tag: PANA_1918
	PANA_1918	-140	4	AAAAGCGAGTCTAATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: maltodextrin phosphorylase
Escherichia coli str. K-12 substr. MG1655	b3417	-141	4.5	TTAAGTGGTTGAGATCACATTT
Citrobacter koseri ATCC BAA-895	CKO_04838	-139	4	TTAAGTGGCGGCGATCACACTT
Serratia proteamaculans 568	Spro_4636	-139	4.4	AAAAGTGCCTGAGATCACAATT

Position: -103 Score: 4.3 Sequence: AAGTGTGATTAGACTCGCTTTT Locus tag: PANA_1919
	PANA_1919	-103	4.3	AAGTGTGATTAGACTCGCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655	b3418	-142	4.3	AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2	STM3515	-143	4.3	AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_04840	-142	4.3	AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03788	-142	4.4	ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638	Ent638_3831	-142	4.6	AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM	y3900	-202	4.6	AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568	Spro_4637	-203	4	AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202	ETAE_3303	-212	3.8	AAATGTGATCAGCCGCAATTTC

Position: -107 Score: 4.7 Sequence: TTATGTGTGTTAAATCACATAT Locus tag: PANA_1975
	PANA_1975	-107	4.7	TTATGTGTGTTAAATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -242 Score: 3.8 Sequence: AATGATGATTTAGATCAATTTA Locus tag: PANA_2088
	PANA_2088	-242	3.8	AATGATGATTTAGATCAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655	b1242	-257	5.1	TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2	STM1748	-256	4.8	TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895	CKO_01319	-167	5	TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02198	-261	4.8	TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638	Ent638_2303	-256	4	AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946	EAM_1899	-158	3.8	AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568	Spro_2703	-268	5.2	TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320	PMI1485	-290	5.3	TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2495	-295	4.9	TATATTGATCTTAATCACATAA

Position: -217 Score: 4.1 Sequence: TAAATTGATCTAAATCATCATT Locus tag: PANA_2089
	PANA_2089	-217	4.1	TAAATTGATCTAAATCATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -136 Score: 5.1 Sequence: AAAGGTGATCGAGTTCACAAAT Locus tag: PANA_2109
	PANA_2109	-136	5.1	AAAGGTGATCGAGTTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655	b1778	-137	5.2	AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2	STM1291	-107	4.7	TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895	CKO_01799	-107	4.9	AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01198	-135	5.1	AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638	Ent638_1676	-137	5.2	ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946	EAM_1930	-137	5.2	AATGGTGATCTGCATCACAATT
Yersinia pestis KIM	y2164	-85	5.1	ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568	Spro_2727	-143	5.7	ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2343	-135	5.6	TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202	ETAE_1484	-91	4.9	GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320	PMI1503	-137	5.3	TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA

Position: -217 Score: 5.1 Sequence: ATTTGTGAACTCGATCACCTTT Locus tag: PANA_2110
	PANA_2110	-217	5.1	ATTTGTGAACTCGATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -65 Score: 3.9 Sequence: TTTAGTGATGGACTTCGCAACC Locus tag: PANA_2133
	PANA_2133	-65	3.9	TTTAGTGATGGACTTCGCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1805	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1818	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02322	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1956	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2236	-80	4.1	AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568	Spro_2760	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2372	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1166	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -223 Score: 3.7 Sequence: TATTGTGAGCGGGCGCAACCTG Locus tag: PANA_2253
	PANA_2253	-223	3.7	TATTGTGAGCGGGCGCAACCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -93 Score: 4.2 Sequence: ATTAGCGATCCAGATCTCACTT Locus tag: PANA_2309
	PANA_2309	-93	4.2	ATTAGCGATCCAGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: trg
Ortholog function: Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
Escherichia coli str. K-12 substr. MG1655	b1421	-201	3.4	TTGCGTGCTGTTTTCCAGAATT
Citrobacter koseri ATCC BAA-895	CKO_01456	-108	3.7	AAATGTGACAAACATTCCGATT
Enterobacter sp. 638	Ent638_1961	-110	3.5	AAGTGTGACCCACCTGGCGCTT

Position: -164 Score: 4.1 Sequence: AAAAATGATCAGCGTCGCATTT Locus tag: PANA_2324
	PANA_2324	-164	4.1	AAAAATGATCAGCGTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yedJ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1962	-287	4.6	TGGTGTGATCAGGCGCACATTA
Salmonella typhimurium LT2	STM1993	-70	5.5	AAATGTGATTAATATCACATTA
		-34	4.4	TCATATGACTTACATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_00980	-168	3.8	TTTTGTGAATGTTTTATCGTAA
Erwinia amylovora ATCC 49946	EAM_2082	-129	3.8	TGATGTAATGAGCAACAAATAA
		-101	4.4	AAGTTTGATGTGGCTAAAATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0518	-156	5.6	AAATGTGATGTGAATCACACAA

Position: -127 Score: 4.2 Sequence: TTCTGTGAGCTGTCTCACGAAC Locus tag: PANA_2438
	PANA_2438	-127	4.2	TTCTGTGAGCTGTCTCACGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655	b3904	-162	3.8	AAATGCGGTGAGCATCACATCA
		-127	4.4	AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2	STM4047	-247	3.9	AAGGGTTATCGGCCTCACCTTA
		-127	4.1	AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895	CKO_03100	-182	4.5	AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04213	-128	4.2	AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638	Ent638_4067	-129	4.2	AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM	y0587	-234	4.2	AACTGTGAGCTGTTTCACTTTC

Position: -297 Score: 4.1 Sequence: GTTCGTGAGACAGCTCACAGAA Position: -261 Score: 4.1 Sequence: AGTTGTGAGCTTTGCCGCATTT Locus tag: PANA_2439
	PANA_2439	-297	4.1	GTTCGTGAGACAGCTCACAGAA
		-261	4.1	AGTTGTGAGCTTTGCCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655	b3905	-182	4.5	GAACGTGATGATGTTCACAATT
		-147	4.5	TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2	STM4048	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895	CKO_03099	-194	4.5	GAACGTGATAGCGTTCACAATT
		-34	4.3	ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04214	-204	3.8	GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638	Ent638_4066	-194	4.2	GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM	y0590	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0441	-144	3.9	CGGTGTGATCCTTGCCACACTT

Position: -76 Score: 3.5 Sequence: ATTTGTGATCTTTATGTTGAAA Locus tag: PANA_2441
	PANA_2441	-76	3.5	ATTTGTGATCTTTATGTTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose-proton symport
Escherichia coli str. K-12 substr. MG1655	b3907	-145	4.1	AGATGTGAAGCAAATCACCCAC
Salmonella typhimurium LT2	STM4050	-293	3.6	TTATGTGACCTCACGCAGCGTT
		-149	3.9	AAACGTGAAGTTAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_03094	-148	4.1	ATATGTGAGCCAAATCACCCGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04216	-149	4.7	TTTTGTGATGTAGAACAACTAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0450	-193	3.6	TTTTGTGATCCTGCCTATATCA

Position: -94 Score: 4.3 Sequence: TTATGTGAATAAGAACACGTTT Locus tag: PANA_2459
	PANA_2459	-94	4.3	TTATGTGAATAAGAACACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbJ
Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Escherichia coli str. K-12 substr. MG1655	b2736	-90	4.9	TTATGTGAATCAGATCACCATA
Salmonella typhimurium LT2	STM2918	-90	4	TTTTGTGAAACAACTCACCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01605	-91	5	ATTCGTGATAACTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1106	-90	4.4	TGATGTGAAGTTTATCACTAAT
Serratia proteamaculans 568	Spro_1492	-92	4.1	AATTGTGACAACGATCGCTGAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4327	-92	4.5	TTATGTGATAAAAATCACCACA
Edwardsiella tarda EIB202	ETAE_1922	-93	3.9	ATTTGTGAGGATAAACACGGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2507	-147	3.8	ATAAATAATATAAATCAAATAA
		-90	3.7	GAATGTGATAACCATCGTGTAT

Position: -186 Score: 4.7 Sequence: AAACGTGTTCTTATTCACATAA Locus tag: PANA_2460
	PANA_2460	-186	4.7	AAACGTGTTCTTATTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbI
Ortholog function: Hypothetical transcriptional regulator ygbI
Escherichia coli str. K-12 substr. MG1655	b2735	-166	3.7	TTGTTTGATATTGTGAATATAA
		-127	5.2	TATGGTGATCTGATTCACATAA
Salmonella typhimurium LT2	STM2919	-128	4	TGCGGTGAGTTGTTTCACAAAA
		-87	3.6	TTTTGTGAAGGCAATCCTCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01606	-271	3.6	TAATGTGATTTAATGATAGAAT
		-230	4.7	ATATGTGAGAGTTATCACGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_pKPN4p07051	-233	3.6	TAATGTGATTTAATGATAGAAT
		-192	4.7	TTATGTGAGAGTTATCACGAAT
Erwinia amylovora ATCC 49946	EAM_1104	-238	4.5	ATTAGTGATAAACTTCACATCA
Serratia proteamaculans 568	Spro_1493	-211	3.9	ATCAGCGATCGTTGTCACAATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4325	-267	4.8	TGTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202	ETAE_1921	-132	3.9	AACCGTGTTTATCCTCACAAAT

Position: -313 Score: 4.7 Sequence: ATCTGTGATTGTATTCACAGTT Locus tag: PANA_2541
	PANA_2541	-313	4.7	ATCTGTGATTGTATTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655	b2150	-270	4.5	ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895	CKO_00641	-270	4.7	ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02588	-239	4.8	ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638	Ent638_2750	-271	4.4	ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM	y2662	-212	4.4	ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568	Spro_1563	-229	4.4	ATCTGTGAGAAAATTCACAGAT

Position: -96 Score: 4.3 Sequence: TGATGTGACGTAATTCACGCTG Locus tag: PANA_2542
	PANA_2542	-96	4.3	TGATGTGACGTAATTCACGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b2151	-146	3.5	GATAACGATCTGGATCACATTC
		-95	3.9	TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2	STM2191	-154	3.5	GATAACGATCTGGATCACATTC
		-103	3.5	CCCTGTGATGTTTCTCACGCAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895	CKO_00640	-157	3.5	GATAACGATCTGGATCACATTC
		-106	3.4	CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02589	-160	3.3	GATAACGATCTCGATCACAATC
		-109	3.4	CCGTGTGACCTCACTCACGCAG
		-33	3.6	TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638	Ent638_2751	-160	3.4	GATAACGATCTGGATCACAATC
		-109	4.1	CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946	EAM_2208	-110	3.4	GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568	Spro_1562	-135	3.4	AATTGAGATCTGGCGCAGGTAG
		-84	3.5	TCCTGTGACGGGATTCACGCAG

Position: -177 Score: 3.8 Sequence: AATTGTGCGTAATGTCAAAGAT Position: -157 Score: 3.6 Sequence: ATCTGTTATGCCGTTTACGCAT Position: -4 Score: 3.6 Sequence: AATTATGTTCCAGCTCGAATTG Locus tag: PANA_2559
	PANA_2559	-177	3.8	AATTGTGCGTAATGTCAAAGAT
		-157	3.6	ATCTGTTATGCCGTTTACGCAT
		-4	3.6	AATTATGTTCCAGCTCGAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655	b2169	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2206	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00613	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02600	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2763	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2223	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2887	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3230	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2729	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2303	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA

Position: -257 Score: 4.4 Sequence: AAGTTTGATAAGTATCAAAAAA Position: -130 Score: 4.2 Sequence: AAATGTGGTGATTTACACATTT Locus tag: PANA_2568
	PANA_2568	-257	4.4	AAGTTTGATAAGTATCAAAAAA
		-130	4.2	AAATGTGGTGATTTACACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -132 Score: 4.4 Sequence: AAGTGAGATTTAACTCGCAAAT Locus tag: PANA_2574
	PANA_2574	-132	4.4	AAGTGAGATTTAACTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -64 Score: 3.7 Sequence: ATATTTGAAGGATGTTACGTAA Locus tag: PANA_2643
	PANA_2643	-64	3.7	ATATTTGAAGGATGTTACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: putative cytoplasmic protein
Escherichia coli str. K-12 substr. MG1655	b2295	-263	3.6	ATTTATGATTAACATCATGCAC
		-54	4.1	AGTTGTGAATTTGCACAAATTT
Erwinia amylovora ATCC 49946	EAM_2300	-44	4	TTGTGTGTTTTTTTTAAAATTT
Edwardsiella tarda EIB202	ETAE_2396	-34	3.6	TTTTTTAACTCTTATCGAATAA
Proteus mirabilis HI4320	PMI1770	-290	3.7	ATTAATGATACGCATCATGCTT
		-260	3.6	AAACTTGATGCTAATTATAGTT

Position: -279 Score: 4.1 Sequence: TTACGTAACATCCTTCAAATAT Locus tag: PANA_2644
	PANA_2644	-279	4.1	TTACGTAACATCCTTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: acetate kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02687	-95	3.8	AGGCATGATGTTAATCATAAAT
Enterobacter sp. 638	Ent638_2840	-96	3.8	TGGCATGATGTTAATCATAAAT
Serratia proteamaculans 568	Spro_3316	-125	3.8	TCACATGATGTTAATCATAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3039	-95	4.2	AGGTATGATGTTAATCATAAAT
Proteus mirabilis HI4320	PMI1771	-123	3.6	AAGCATGATGCGTATCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu3095	-121	3.6	TAGCATGATGTTAATCATTTAA

Position: -182 Score: 4.4 Sequence: CTAAGTGACGAATATCACAATA Position: -160 Score: 4.3 Sequence: AAATTTGATGTGGATCAGTTTT Position: -107 Score: 4 Sequence: AAGTGTTAAGCAGATCGAATTT Locus tag: PANA_2696
	PANA_2696	-182	4.4	CTAAGTGACGAATATCACAATA
		-160	4.3	AAATTTGATGTGGATCAGTTTT
		-107	4	AAGTGTTAAGCAGATCGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -339 Score: 4.2 Sequence: TTTTGTGGCGCAGATCTCACTT Locus tag: PANA_2763
	PANA_2763	-339	4.2	TTTTGTGGCGCAGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655	b2415	-209	3.9	TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2	STM2431	-209	4.4	TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02762	-206	4	TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638	Ent638_2943	-271	4.4	TTTTGTGGTCCACTTCAAACTT
		-144	4	TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568	Spro_3448	-149	3.6	TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320	PMI1828	-275	4.4	TTTTGTGGTAGAGATCAAACTT
		-115	3.6	TAACGTAACATGGCTTATATTA

Position: -103 Score: 3.8 Sequence: TTTTGTGACCCGCCTTAAACCT Locus tag: PANA_2875
	PANA_2875	-103	3.8	TTTTGTGACCCGCCTTAAACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: csiE
Ortholog function: Stationary phase inducible protein CsiE
Escherichia coli str. K-12 substr. MG1655	b2535	-104	3.5	TTCTGTGACGCTTGCCAACATT
Salmonella typhimurium LT2	STM2553	-106	3.8	TTCTGTGACACTCCTCAGCATT
Citrobacter koseri ATCC BAA-895	CKO_00245	-105	3.4	TTCTGTGATGCTCGCCAGCATT
		-42	3.6	TTTAGCTATCCTTATCAAACAA
Erwinia amylovora ATCC 49946	EAM_2496	-103	3.4	TTTTGTGACCTGCCTTAAAAGC
Yersinia pestis KIM	y1328	-161	4.1	TAATGTAACACATAGCGCATTA
Serratia proteamaculans 568	Spro_3633	-276	3.4	AAAGGTGGTGTTCATATCAATA

Position: -83 Score: 5.4 Sequence: TTTTGTGATCAAAATCACACAT Locus tag: PANA_3014
	PANA_3014	-83	5.4	TTTTGTGATCAAAATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -296 Score: 4.7 Sequence: TTCTGTGATTTTGCTCACACAG Locus tag: PANA_3103
	PANA_3103	-296	4.7	TTCTGTGATTTTGCTCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdA
Ortholog function: D-serine dehydratase
Escherichia coli str. K-12 substr. MG1655	b2366	-154	4.4	TAAAGTGAACCATATCTCAATT
Salmonella typhimurium LT2	STM3802	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.2	ATATTAGATGGAAATCACATAG
Citrobacter koseri ATCC BAA-895	CKO_00021	-124	4	TTATTGGATGCAAATCACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04081	-152	4.3	TAATTTGACCCATAGCATATTT
		-122	3.7	CTTTTAGAGCTAAATCACCTTT
Serratia proteamaculans 568	Spro_2515	-123	3.7	TAAATTGACGAGCATCATCTTT
Proteus mirabilis HI4320	PMI0187	-126	4.4	ATTTGTGCATCTGATCACCTAT
		-44	3.6	ATATTCAATATGTTTAACAATA

Position: -212 Score: 4.7 Sequence: TTTGGTGACTTATGTCACATAA Locus tag: PANA_3196
	PANA_3196	-212	4.7	TTTGGTGACTTATGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2913	-210	4.1	TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2	STM3062	-217	4.5	TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03348	-214	4.6	TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638	Ent638_3332	-215	4.1	TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM	y3301	-126	4.8	TTTGGTGATATATATCACATTC
Serratia proteamaculans 568	Spro_3923	-215	4.4	TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3905	-214	3.9	TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320	PMI2031	-210	4	TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC

Position: -198 Score: 4.8 Sequence: TTTTGTGATGTAGATCCAAAAA Locus tag: PANA_3205
	PANA_3205	-198	4.8	TTTTGTGATGTAGATCCAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2927	-213	4.7	AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2	STM3070	-213	5	AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_04297	-213	4.8	AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03356	-213	4.8	AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638	Ent638_3340	-215	4.5	AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946	EAM_2813	-208	4.1	TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM	y3309	-216	3.7	AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3913	-194	4.1	TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202	ETAE_2958	-233	4.9	AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320	PMI0241	-253	4.4	AAATGTTAACAAGAGCACATTT

Position: -21 Score: 3.4 Sequence: ATTGGTAAGGTAAAGAACATAA Locus tag: PANA_3210
	PANA_3210	-21	3.4	ATTGGTAAGGTAAAGAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655	b2942	-200	3.6	GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2	STM3090	-200	3.9	CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04317	-199	3.5	CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03375	-199	4.3	AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638	Ent638_3346	-199	4.4	TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320	PMI2095	-275	3.5	CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3683	-205	3.3	GTTTATACTCGCAATCACATAA

Position: -347 Score: 4.1 Sequence: TAATGTGTTAACGCTTACAATT Position: -124 Score: 4.8 Sequence: CAATGTGATCGGGTTCACTTTT Locus tag: PANA_3211
	PANA_3211	-347	4.1	TAATGTGTTAACGCTTACAATT
		-124	4.8	CAATGTGATCGGGTTCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galP
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655	b2943	-156	3.6	TATGATGATATAACTCAATTAT
		-82	4.9	TGATGTGATTTGCTTCACATCT
Salmonella typhimurium LT2	STM3091	-83	4.6	CATTGTGATTAGCCTCACATCT
Citrobacter koseri ATCC BAA-895	CKO_04318	-83	5.3	TAACGTGATTCGAATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03376	-84	3.8	AGCCGTGATTATAGTCACGTTT
Enterobacter sp. 638	Ent638_3347	-171	3.9	TATTGGGATGCACATCAACTCT
		-102	3.7	TAGTGTAACCGATTACACCAAT
		-84	5.3	CAATGTGATTTATCTCACATAT
Erwinia amylovora ATCC 49946	EAM_2827	-152	4.1	TCATGTGATCTGTCGCACAGTC
Serratia proteamaculans 568	Spro_1160	-276	4.5	TGGTGTGATATCGGTTACATTT
		-100	3.6	TTGTGTAATCGTTTCCACTAAT
		-82	4.6	TAATGTGATCGCACTCACTTAC
Edwardsiella tarda EIB202	ETAE_2966	-275	3.7	CAAAGTGAAAACGATTACATTT
		-61	4.5	TTATGTGATCATGCGCACTTTA

Position: -4 Score: 3.6 Sequence: TTTTTTGACTTGTCGCGCGCTT Locus tag: PANA_3299
	PANA_3299	-4	3.6	TTTTTTGACTTGTCGCGCGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoB
Ortholog function: phosphopentomutase
Escherichia coli str. K-12 substr. MG1655	b4383	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4569	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03408	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04839	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0543	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0617	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3741	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0662	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0729	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2414	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -112 Score: 3.9 Sequence: AAATGTTATAATAGTAACATTC Position: -4 Score: 4.1 Sequence: CGATGTGACGAATGGCACATAT Locus tag: PANA_3301
	PANA_3301	-112	3.9	AAATGTTATAATAGTAACATTC
		-4	4.1	CGATGTGACGAATGGCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -91 Score: 4.1 Sequence: TTTTATGATGTTTCTCACACCC Locus tag: PANA_3448
	PANA_3448	-91	4.1	TTTTATGATGTTTCTCACACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -94 Score: 4.5 Sequence: AAATGTGACCTGAGTCGTAAAA Locus tag: PANA_3456
	PANA_3456	-94	4.5	AAATGTGACCTGAGTCGTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655	b3092	-232	4.5	AAAGGTGAGAGCCATCACAAAT
		-110	4.4	TTTATTGATCTAACTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_04494	-169	4.6	AAAGGTGAGTGACATCACAAAT
		-47	4.3	TTTATTGATCCAACTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03520	-251	3.8	AAAGTTGAGAGCTGTCACAAAA
		-129	4.4	TTTATTGATCTAACTCACGAAA
Enterobacter sp. 638	Ent638_3546	-231	4.6	AAAGGTGAGTGACATCACAAAA
		-109	4.4	TTTATTGATCTAACTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0645	-229	4.1	AAAGTTGAGTGATATCACAAAA
		-109	3.8	TTTTGCGATCATGACCTCACAA
		-86	3.7	TCCTGTGAGATATTGCGCATAA

Position: -204 Score: 4.8 Sequence: TTTTGTGATGGCTTTCAACTTT Locus tag: PANA_3457
	PANA_3457	-204	4.8	TTTTGTGATGGCTTTCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Escherichia coli str. K-12 substr. MG1655	b3093	-274	4.2	TTTCGTGAGTTAGATCAATAAA
		-152	5.1	ATTTGTGATGGCTCTCACCTTT
Citrobacter koseri ATCC BAA-895	CKO_04495	-250	5.2	ATTTGTGATGTCACTCACCTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03521	-263	4.4	TTTTGTGACAGCTCTCAACTTT
Enterobacter sp. 638	Ent638_3547	-261	4.2	TTTCGTGAGTTAGATCAATAAA
		-139	5.2	TTTTGTGATGTCACTCACCTTT
Serratia proteamaculans 568	Spro_4322	-180	4.8	TTTTGTGATATCACTCAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0644	-208	4.8	TTTTGTGATATCACTCAACTTT

Position: -214 Score: 4.6 Sequence: AATCGTGATGAAGATAACGTTT Locus tag: PANA_3516
	PANA_3516	-214	4.6	AATCGTGATGAAGATAACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655	b4214	-126	3.6	AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2	STM4404	-144	3.9	TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895	CKO_03615	-178	4.1	TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04608	-178	4.1	TTTTATGAGCGATAGCACAGAA
		-126	3.7	AAATGTGAATCTTGCCAGAAAA
		-57	3.9	TGATGCGATATAAATAAAACAA
Enterobacter sp. 638	Ent638_0393	-167	3.9	TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946	EAM_0455	-158	4.2	AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568	Spro_0454	-180	3.7	AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3601	-258	3.7	TAAAGTGATTATCGTCTCTAAA

Position: -78 Score: 4.5 Sequence: AAACGTTATCTTCATCACGATT Locus tag: PANA_3517
	PANA_3517	-78	4.5	AAACGTTATCTTCATCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -215 Score: 5.1 Sequence: AAAAGTGATTTAGATCACATTC Locus tag: PANA_3558
	PANA_3558	-215	5.1	AAAAGTGATTTAGATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3242	-167	5.4	AAAAGTGATTTAGATCACATAA
Salmonella typhimurium LT2	STM3366	-166	5.4	AAAAGTGATTTAGATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_04650	-168	5.4	AAAAGTGATTTAGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03651	-116	5.2	AAAAGTGATTTAGATCACACAT
		-63	3.7	TATTGTTAGCTACATAATAAAC
Enterobacter sp. 638	Ent638_3679	-165	5.4	AAAAGTGATTTAGATCACATAT
Yersinia pestis KIM	y0179	-269	5.2	AAAAGTGATTTAGATCACACAT
Serratia proteamaculans 568	Spro_4392	-293	5.1	AAAAGTGATTTAGATCACAGAT
		-89	3.8	ATTTGTGGTGCGTGTCAGCTAA

Position: -37 Score: 4.7 Sequence: GAATGTGATCTAAATCACTTTT Locus tag: PANA_3559
	PANA_3559	-37	4.7	GAATGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b3243	-37	5.3	TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2	STM3367	-37	5.3	TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04651	-37	5.3	ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03652	-55	5.1	ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638	Ent638_3680	-37	5.3	ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946	EAM_3128	-37	5.3	AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM	y0180	-55	5.1	ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568	Spro_4393	-37	4.9	ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0276	-37	5.1	TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202	ETAE_3129	-131	4.5	ATCTGTGACGCAAATCACTTTT

Position: -289 Score: 4.1 Sequence: TATTGTAATCGTGCCCAAAATA Position: -231 Score: 3.2 Sequence: AAGCGTGTTTCCATTCAGGAAA Locus tag: PANA_3652
	PANA_3652	-289	4.1	TATTGTAATCGTGCCCAAAATA
		-231	3.2	AAGCGTGTTTCCATTCAGGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3356	-187	4.2	TAATGTGACGTCCTTTGCATAC
Salmonella typhimurium LT2	STM3465	-188	3.9	TAATGTGATGTCCTCTGCATAC
Citrobacter koseri ATCC BAA-895	CKO_04775	-187	3.3	GAATGTGATGTCCTCTGCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03742	-188	3.5	TAATGTGAACTCCTCTGCATAC
Serratia proteamaculans 568	Spro_4579	-280	3.3	GGTTTTGAGGCGTGTCATAAAT

Position: -94 Score: 3 Sequence: TTTCCTGAATGGAAACACGCTT Position: -36 Score: 3.5 Sequence: TATTTTGGGCACGATTACAATA Locus tag: PANA_3653
	PANA_3653	-94	3	TTTCCTGAATGGAAACACGCTT
		-36	3.5	TATTTTGGGCACGATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -262 Score: 3.8 Sequence: AATAGTAATGTAAATCATTTAA Locus tag: PANA_3675
	PANA_3675	-262	3.8	AATAGTAATGTAAATCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655	b3397	-53	3.7	AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895	CKO_04820	-54	4.1	AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03768	-54	4	AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638	Ent638_3810	-55	3.6	AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM	y3923	-247	4.5	CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568	Spro_4612	-135	4.4	CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202	ETAE_3268	-116	3.6	AAATATGAGCATCTGCGCACAA

Position: -142 Score: 3.6 Sequence: TTAAATGATTTACATTACTATT Locus tag: PANA_3676
	PANA_3676	-142	3.6	TTAAATGATTTACATTACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655	b3398	-288	3.6	TTGTGCGATATCGGACACGCTT
		-123	3.8	TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2	STM3495	-238	3.6	TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895	CKO_04821	-290	3.9	TTGTGCGATATACAGCACGGTT
		-238	3.7	TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03769	-282	3.8	TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638	Ent638_3811	-287	3.7	TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM	y3922	-186	3.7	TATTGTGACTGCGTTAGCTTTG

Position: -52 Score: 4.8 Sequence: TTGCGTGATATGGATAACATTA Locus tag: PANA_3695
	PANA_3695	-52	4.8	TTGCGTGATATGGATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpE
Ortholog function: thiosulfate sulfurtransferase
Escherichia coli str. K-12 substr. MG1655	b3425	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3525	-104	4.7	TAGAGTGATATGTATAACATTA
Citrobacter koseri ATCC BAA-895	CKO_04844	-108	4.6	TAGAGTGATACATATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03791	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3834	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3264	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0197	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -127 Score: 4.7 Sequence: TAATGTTATCCATATCACGCAA Position: -35 Score: 3.5 Sequence: ATAAGTGAACTATTCCGAACAT Locus tag: PANA_3696
	PANA_3696	-127	4.7	TAATGTTATCCATATCACGCAA
		-35	3.5	ATAAGTGAACTATTCCGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -132 Score: 4.6 Sequence: TTTTATGAAGCAGCTCACACTT Locus tag: PANA_3705
	PANA_3705	-132	4.6	TTTTATGAAGCAGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: gluconate kinase 1
Erwinia amylovora ATCC 49946	EAM_3275	-129	4.6	TTTTTTGACAGTCTTCACACTT

Position: 0 Score: 3.9 Sequence: TTGTGTGATGGATTTAGCATGA Locus tag: PANA_3805
	PANA_3805	0	3.9	TTGTGTGATGGATTTAGCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: b1821
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM1834	-276	3.7	AATTGTTATTTAATTTAACGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2389	-267	3.8	TAGTGTTGTTTGCATCATAAAT
Proteus mirabilis HI4320	PMI1608	-272	3.8	AATTATTATCAATATCATCTTT
		-237	3.9	TAATATGTTGCCTTTCATAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2701	-281	3.9	TATTGTGCTATCTTTTAAATTG
		-179	3.7	AAACGTGGTGCGGGTAACCTTA

Position: -29 Score: 3.6 Sequence: AATAGTGAATAAAAATACATTA Locus tag: PANA_3843
	PANA_3843	-29	3.6	AATAGTGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -65 Score: 3.8 Sequence: TAATGTATTTTTATTCACTATT Locus tag: PANA_3844
	PANA_3844	-65	3.8	TAATGTATTTTTATTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -152 Score: 3.7 Sequence: GGTTGTGAGAGGGATCGAAAAA Locus tag: PANA_3853
	PANA_3853	-152	3.7	GGTTGTGAGAGGGATCGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655	b3934	-128	3.9	AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03060	-129	3.8	AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04229	-162	3.6	TCTTGCGAGCCGGATCGAAAAA
		-143	3.9	AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM	y0297	-177	3.7	TTCTGCGAGCCAGTTCGAAAAA
		-135	3.6	TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202	ETAE_3434	-258	4.2	AAGTGCGATCGGGATCGAAAAA
		-175	3.6	ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320	PMI3218	-207	4.3	TTTTGCGAACTACCTCATAAAA
		-189	3.9	AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT

Position: -151 Score: 4.3 Sequence: TTTTTTGACACACTACACAAAA Locus tag: PANA_3859
	PANA_3859	-151	4.3	TTTTTTGACACACTACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Erwinia amylovora ATCC 49946	EAM_0119	-146	4.1	TTTCATGACGCGGTACACATTT

Position: -214 Score: 4.5 Sequence: CAAAGTGATTATCATCACAAAA Locus tag: PANA_4223
	PANA_4223	-214	4.5	CAAAGTGATTATCATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ascF
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2715	-177	4.2	TCAGGTGACCGGTTTCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_04070	-179	4.4	ACAAGTGATCATTCTCACAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03051	-168	4.1	CTTAGCGATCAAAATCACAAAA
Enterobacter sp. 638	Ent638_3188	-128	4.4	CAAAGTGATCGTTATCACGAAT
		-54	3.7	TTTTGTGAAACCGGTTTCCTAT
Serratia proteamaculans 568	Spro_0576	-189	4.4	AAAAGTGACCACCATCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2165	-255	3.9	CATGGCGATCGTGGTCACATAA
		-212	3.9	TATTGAAATCGCACTCATATAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Pantoea ananatis LMG 20103

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --