Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Pantoea ananatis LMG 20103

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pantoea ananatis LMG 20103
Orthologous TF(s) PANA_3653
Regulated genes 173
Built upon 2301 sites [see more]
Predicted regulatory interactions in Pantoea ananatis LMG 20103
Locus tag Position Score Sequence
Position: -183
Score: 4.8
Sequence: TTATGTGATCTAAAGCACGCTT
Locus tag: PANA_0020
PANA_0020 -183 4.8 TTATGTGATCTAAAGCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655 b3739 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3872 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00079 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4125 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3481 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4142 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0001 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3526 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3057 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -265 5.7 TTATGTGATTTAAATCACATTT
Position: -220
Score: 4
Sequence: ATTTATGAGCGCGATCGAAAAT
Position: -133
Score: 4.2
Sequence: TTTTGCGAGCAAGTGCACAATA
Locus tag: PANA_0039
PANA_0039 -220 4 ATTTATGAGCGCGATCGAAAAT
-133 4.2 TTTTGCGAGCAAGTGCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655 b3565 -224 3.9 ATTTATGACCGAGATCTTACTT
-134 4.2 TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2 STM3661 -260 3.9 TTATGCGAAATTCATCACAGCA
-133 4.4 TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895 CKO_05021 -214 4.1 AATTATGACCGAGATCGTACTT
-122 4.2 TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03929 -234 4.1 TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638 Ent638_0156 -231 3.8 ATTTATGACCGTGATCTGATTT
-135 3.9 TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM y4057 -220 4.6 TTATGAGATCTACACCACAATT
Serratia proteamaculans 568 Spro_0098 -222 3.9 TTTTATGATGGCGGTCATGCTT
-129 4.6 TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0097 -223 4.7 TTTTTTGATGCGGGTCATATTT
-135 4.4 TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2275 -251 4.6 ATTTATGAGATAAATCACACAA
Position: -234
Score: 4.4
Sequence: TATTGTGCACTTGCTCGCAAAA
Position: -147
Score: 4
Sequence: ATTTTCGATCGCGCTCATAAAT
Locus tag: PANA_0040
PANA_0040 -234 4.4 TATTGTGCACTTGCTCGCAAAA
-147 4 ATTTTCGATCGCGCTCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Escherichia coli str. K-12 substr. MG1655 b3566 -253 4.2 AAGTGTGCGCTCGCTCGCAAAA
-163 3.7 AAGTAAGATCTCGGTCATAAAT
Citrobacter koseri ATCC BAA-895 CKO_05022 -254 4.1 AAGTGTGCGCCGCCTCGCAAAA
-162 3.8 AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03930 -234 3.8 AAATACGATCGCCGTCATAATT
Enterobacter sp. 638 Ent638_0155 -264 3.9 AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM y4056 -264 4.8 AATTGTGGTGTAGATCTCATAA
-160 4.2 AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568 Spro_0099 -259 4.4 AAATGTGCGACAGATCTCATAA
-166 3.7 AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0098 -272 4.5 AAATATGACCCGCATCAAAAAA
Position: -55
Score: 4.2
Sequence: CAATGTGAGCTGAATCGCGCTA
Locus tag: PANA_0086
PANA_0086 -55 4.2 CAATGTGAGCTGAATCGCGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yidA
Ortholog function: Phosphatase YidA
Yersinia pestis KIM y4109 -57 4.1 ATTTGTGTGCTGAATCGCGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4428 -228 3.8 TTACGTTATACCCGTCATACTT
Position: -293
Score: 5.1
Sequence: AATTGTGATCTTAGTCTCATTT
Position: -249
Score: 4.9
Sequence: AAATGTGATCGCAATCACTATA
Position: -132
Score: 5.4
Sequence: AAATGTGACCTAAATCACACTA
Locus tag: PANA_0112
PANA_0112 -293 5.1 AATTGTGATCTTAGTCTCATTT
-249 4.9 AAATGTGATCGCAATCACTATA
-132 5.4 AAATGTGACCTAAATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b3599 -206 4.5 TTTTGTGATGAACGTCACGTCA
-162 5.4 TTATGTGATTGATATCACACAA
-113 3.3 TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2 STM3685 -207 4.8 CTTTGTGATCAATATCACATCA
-163 5.4 TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_05054 -203 5.2 TTTTGTGATCAATATCACATCA
-159 5 TCATGTGATCCAAATCACACAA
-110 3.4 TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03942 -208 4.9 TTTTGTGATCATCATCACTAAA
-164 5.2 TCATGTGATCCAAATCACATAA
-115 3.4 TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638 Ent638_0136 -224 3.4 TATTTTTTTCATACTCTCATTT
-205 4.8 TTTTGTGATGGCGATCACCTCA
-161 5.1 TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946 EAM_3416 -229 3.3 CATTGCGAATATCTTTACACTT
-210 3.9 CTTCGTGACTCATGTCACTAAA
-166 4.8 TTAAGTGACCCGCATCACACTT
-95 3.2 CGTTTTGATCGTGATCCCTCAA
-34 3.5 ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM y4087 -223 4.6 AGATGTGATCTTAATCAACAAA
-179 4.5 TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568 Spro_0072 -195 5.2 AAATGTGATGTATATCACTATA
-151 4.5 GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0087 -230 5.1 TTTTGTGAAGTAAATCACCTAT
-186 4.5 TTGTGTGATTTTTGTCACGTTG
Position: -204
Score: 3.7
Sequence: ATTTATGACCTGTGTAGCAGAA
Locus tag: PANA_0121
PANA_0121 -204 3.7 ATTTATGACCTGTGTAGCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: dipeptide ABC transporter, substrate-binding protein
Citrobacter koseri ATCC BAA-895 CKO_04994 -121 3.8 TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03899 -62 4 ATATGCAAACAACATCACAATT
Yersinia pestis KIM y3825 -211 3.9 AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568 Spro_0138 -271 3.8 TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1 plu0300 -223 3.7 AAATGTGCGCATTGTCATGTTT
Position: -138
Score: 4
Sequence: AAATTTGTCATTCATCACAGTA
Locus tag: PANA_0182
PANA_0182 -138 4 AAATTTGTCATTCATCACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655 b2240 -219 3.7 TTGTTTGATTTCGCGCATATTC
-179 3.6 AAACGTGATTTCATGCGTCATT
-129 4.6 ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2 STM2283 -220 3.6 ATGTTTGATTTCGCGCATAATC
-180 4.2 AAACGTGATTTCGTGCGCCTTT
-131 5.2 ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_00537 -221 3.6 TTGTTTGATTTCGCGCATAATC
-181 4 AAACGTGATTTCGTGCGCTTTT
-132 4.8 ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -218 3.8 TTGTTTGATTTCGAGCATATTC
-178 4.6 TTATGTGATTTCGTGCTCACAT
-128 4.5 AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638 Ent638_2804 -201 3.6 TTGTTTGATTTCGAACATAATC
-161 3.8 AAGCGTGATCTCATGCGCTTAT
-111 4 ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946 EAM_0195 -240 3.7 AAACGCGATGCGGTTAACGATG
-147 3.7 ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568 Spro_0199 -249 4.5 GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -253 3.7 ATGTTTGATAAAGAGCAAAAAC
-193 4.9 AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202 ETAE_3116 -200 3.7 ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320 PMI3591 -291 3.6 ATGTTTGATAATGAGCAAAAAC
-232 5.4 ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -250 4.9 TATTGTGACAATTGTCACAATT
Position: -131
Score: 5.2
Sequence: ATGTGTGATCTAAATCACCTTA
Position: -79
Score: 4.5
Sequence: TTAAGTGAATTTAGTCACATAT
Locus tag: PANA_0188
PANA_0188 -131 5.2 ATGTGTGATCTAAATCACCTTA
-79 4.5 TTAAGTGAATTTAGTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655 b3831 -144 5.2 TTATGTGATTTGCATCACTTTT
-92 4.2 CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2 STM3968 -144 5.1 TATTGTGATGAACATCACTTTT
-92 4.1 CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_00173 -143 5.2 TTATGTGATGTAAATCACTATT
-91 3.9 CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04327 -143 5.2 TAATGTGATGTGTATCACTATT
-91 4.1 CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638 Ent638_3962 -143 4.7 TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946 EAM_0200 -143 4.6 AATTGCGACTTGTATCACCTTT
-90 4 ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM y0444 -149 5.4 ATGTGTGATTTAAATCACAATT
-97 4 CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568 Spro_0244 -143 5.3 TTTTGTGACTTTAATCACAAAA
-125 3.7 AAAAGTTATGTAGATTGCATTC
-91 4.1 CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0185 -197 5.1 AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202 ETAE_0143 -148 4.7 TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320 PMI3532 -145 5.1 ATTTGTGATAACTATCACGTTT
-93 3.6 ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4417 -271 5.2 TTTTGTGATTTATATCTCAAAA
-219 4 TGAAGTGACATTTATCACTAAA
Position: 18
Score: 3.2
Sequence: AACAGTGAATTACTTTTCAGTA
Locus tag: PANA_0233
PANA_0233 18 3.2 AACAGTGAATTACTTTTCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655 b4014 -117 3.6 AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2 STM4183 -168 3.3 TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895 CKO_03906 -166 3.3 TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM y0015 -254 3.3 ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568 Spro_4503 -228 3.5 TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3991 -185 3.3 TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320 PMI2764 -68 3.7 ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -65 3.8 GTTTTTGATTTATTTTAAATAT
Position: -181
Score: 5.3
Sequence: TAGTGTGACCCACATCACATTA
Locus tag: PANA_0280
PANA_0280 -181 5.3 TAGTGTGACCCACATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b4060 -149 5.7 AATTGTGATATAGTTCACAAAA
Salmonella typhimurium LT2 STM4263 -149 5.7 TTTTGTGATATAGTTCACAAAA
Citrobacter koseri ATCC BAA-895 CKO_03830 -150 5.7 TATTGTGATATAGTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04460 -143 5.4 AAGTGTGATATAGTTCACACAA
Enterobacter sp. 638 Ent638_0263 -82 5.3 AAACGTGATATAGTTCACACAT
Serratia proteamaculans 568 Spro_2355 -81 5 CAATGTGACGCAGATCACACTA
Position: -179
Score: 5.2
Sequence: TATTGTGACAAACATCACAATA
Position: -127
Score: 3.6
Sequence: AAATGTGACCAAAAGCTATTTT
Locus tag: PANA_0306
PANA_0306 -179 5.2 TATTGTGACAAACATCACAATA
-127 3.6 AAATGTGACCAAAAGCTATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor
Escherichia coli str. K-12 substr. MG1655 b0411 -250 3.7 TTTTGTTACTCTGCTTACATCA
-129 3.9 AACTGTGAAACGAAACATATTT
Salmonella typhimurium LT2 STM0413 -129 4 ATATGTGAAACAAGACATATTT
Citrobacter koseri ATCC BAA-895 CKO_02750 -131 3.7 ATCTGTGAAACAAGACATATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00363 -131 3.8 TTATGTGAAACAACACGTATTT
Enterobacter sp. 638 Ent638_0879 -124 4.1 ATATGTGAAACAACACATATTT
Erwinia amylovora ATCC 49946 EAM_2589 -218 5.3 ATTTGTGATAAAAATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3796 -172 5.5 TTATGTGATTAAAATCACATAA
Edwardsiella tarda EIB202 ETAE_2935 -245 4.6 TAATTTGATGAGAATCTCAATT
Position: -108
Score: 4
Sequence: TGCTGTGAGGCAGTTCACTCAT
Locus tag: PANA_0331
PANA_0331 -108 4 TGCTGTGAGGCAGTTCACTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: beta-D-galactosidase
Escherichia coli str. K-12 substr. MG1655 b0344 -110 4.7 TAATGTGAGTTAGCTCACTCAT
Citrobacter koseri ATCC BAA-895 CKO_02825 -110 4.4 TTGTGTGAGTCAGTTCACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_pKPN3p05871 -109 4.6 TAATGTGAGTCAGCTCACTCAT
Enterobacter sp. 638 Ent638_0928 -100 4.4 TTTTGTGATCGACTTCGCTTTG
Erwinia amylovora ATCC 49946 EAM_0926 -94 3.8 TGTTGCGATAGCCATCACATCC
Yersinia pestis KIM y1817 -168 4 ACATGTGCGACAGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1490 -149 4.1 CTTTGTGATCGCTTCCACTTTA
-92 4.5 ATATGTTATGGAAAACACAAAT
Position: -46
Score: 5.2
Sequence: ATTTGTGAGCAATTTCACATAT
Locus tag: PANA_0398
PANA_0398 -46 5.2 ATTTGTGAGCAATTTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655 b4139 -206 4.5 AGCGGTGATCTATTTCACAAAT
-156 4.2 TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2 STM4326 -209 4.2 AGCGGTGACCTATTTCACAAAA
-159 4.2 TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895 CKO_03696 -54 4.2 AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 -204 3.9 AGCGGTGACCCATTTCACAGAT
-154 3.8 ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638 Ent638_0326 -205 4.1 AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946 EAM_0416 -228 4.2 CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM y0606 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568 Spro_0406 -205 4.7 AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -272 4 ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202 ETAE_0311 -197 4.4 ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320 PMI2546 -206 4.1 ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -274 3.8 AGATATAATTGGGGTCACAGTT
-211 5.6 AATTGTGATAAATATCACATAT
Position: -153
Score: 5.1
Sequence: ATATGTGAAATTGCTCACAAAT
Locus tag: PANA_0399
PANA_0399 -153 5.1 ATATGTGAAATTGCTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655 b4140 -202 4.1 TACCGTAATCTGGATCACTTTA
-152 4.3 ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2 STM4327 -203 4.1 TACCGTAATCTGGATCACTTAA
-153 4.1 TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895 CKO_03695 -156 4.1 TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04530 -140 3.7 ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638 Ent638_0327 -151 3.8 ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946 EAM_0417 -161 3.9 ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM y0607 -245 4.8 ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568 Spro_0407 -117 4.9 TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0623 -245 3.7 AACTGTGATTGTAGTCACGAGT
-185 3.6 AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202 ETAE_0312 -189 4.6 ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320 PMI2545 -188 4.7 TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4136 -188 5.6 ATATGTGATATTTATCACAATT
Position: -303
Score: 4.5
Sequence: CACAGTGATACAGTTCACATTT
Locus tag: PANA_0418
PANA_0418 -303 4.5 CACAGTGATACAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655 b3212 -199 4.2 AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2 STM3330 -288 3.7 ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638 Ent638_3656 -298 3.9 GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202 ETAE_0527 -278 4.9 AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -241 4 ATATTTGACCTGATTTATATTT
Position: -112
Score: 3.7
Sequence: TTTTGTTATAAACGTTGCACAA
Locus tag: PANA_0420
PANA_0420 -112 3.7 TTTTGTTATAAACGTTGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtgA
Ortholog function: monofunctional biosynthetic peptidoglycan transglycosylase
Escherichia coli str. K-12 substr. MG1655 b3208 -91 3.7 ATTTGTTACATGAATCAGTTAA
-69 4 ATGTGTGATGCGTACCATTTTT
Salmonella typhimurium LT2 STM3326 -91 3.9 ATTTGTTACATGAATCATTTAA
-69 3.6 ATGTGTGAAGCGTAGCATTTTA
Citrobacter koseri ATCC BAA-895 CKO_04611 -92 3.7 TTTTGTTACATGAATCAGTTAA
-70 3.6 ATGTGTGAAGCGCAGCATTTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03617 -93 3.6 ATTTGTTACATGAATCAGTAAA
-71 3.8 ATATGTGAAGCATAGCGAGTTA
Erwinia amylovora ATCC 49946 EAM_3109 -38 3.6 GATTTTTACGCAGATCGCAATT
Serratia proteamaculans 568 Spro_4340 -72 3.7 ATGTGTGATGTAGATTAGTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0317 -72 3.7 ATGTGTGATGTAGATTAGTGTT
Proteus mirabilis HI4320 PMI3680 -174 4.1 TTTTTTGATTATCATTACATAG
Position: -90
Score: 4.8
Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: PANA_0463
PANA_0463 -90 4.8 TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -254
Score: 4.2
Sequence: TTCTGTGAAAAACATCTCAAAA
Locus tag: PANA_0654
PANA_0654 -254 4.2 TTCTGTGAAAAACATCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjtD
Ortholog function: RNA methyltransferase, TrmH family, group 1
Salmonella typhimurium LT2 STM4600 -97 3.6 TTCAGTGATATCAGTTAAAATT
Citrobacter koseri ATCC BAA-895 CKO_03386 -222 3.7 AGGTGTGATTCATTCTAAATTA
-53 4.2 TATGTTGACATTGGTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04857 -94 4 TTTAGTGATTTTTGTTGCAAAT
Enterobacter sp. 638 Ent638_0563 -54 4.3 TATGTTGAGGTGGATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3892 -83 3.7 AATCGTGATCGATTACACGTCC
Position: -96
Score: 4.7
Sequence: TAGTGTGATCCGGCACGCATTT
Locus tag: PANA_0731
PANA_0731 -96 4.7 TAGTGTGATCCGGCACGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaE
Ortholog function: dephospho-CoA kinase
Erwinia amylovora ATCC 49946 EAM_0727 -75 4.4 TCGTGTGATCTGCGCCACATTA
Yersinia pestis KIM y0757 -259 3.8 AAATGTGATCGGGCGTAAAACA
Serratia proteamaculans 568 Spro_0774 -158 3.8 CAGTGTGACCGCCCGCTCATTT
Edwardsiella tarda EIB202 ETAE_0650 -272 4 AAATGTGATCATACAAACGATT
Proteus mirabilis HI4320 PMI2052 -80 3.8 TCTTGTGATAAAAATCAGTTTA
Position: -105
Score: 5.1
Sequence: ATTTGTGATCTATATAAAATAT
Locus tag: PANA_0838
PANA_0838 -105 5.1 ATTTGTGATCTATATAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srlA
Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b2702 -93 4.4 TTTTGCGATCAAAATAACACTT
Salmonella typhimurium LT2 STM2832 -93 4.3 TTTTGCGATCACAATAACACTT
Citrobacter koseri ATCC BAA-895 CKO_04056 -93 4.3 TTTTGAGATCAAAATAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03037 -92 4.6 TTTTGCGATCCATTTAACACTT
Serratia proteamaculans 568 Spro_3569 -110 4.9 AATTGTGATCTATTTAAAACAA
Position: -80
Score: 3.8
Sequence: CTTTGTGTTGCAAATCGCAACA
Locus tag: PANA_0983
PANA_0983 -80 3.8 CTTTGTGTTGCAAATCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02992 -81 4.1 TTATGTGTTGCAAATCGCAACA
Serratia proteamaculans 568 Spro_2411 -76 3.4 TTTTGTGTCCCATGTCGCAACG
Position: -216
Score: 4
Sequence: TGTTGCGATTTGCAACACAAAG
Locus tag: PANA_0984
PANA_0984 -216 4 TGTTGCGATTTGCAACACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldB
Ortholog function: Aldehyde dehydrogenase B (EC 1.2.1.22)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02991 -205 4.4 TGTTGCGATTTGCAACACATAA
Serratia proteamaculans 568 Spro_2410 -225 3.5 CGTTGCGACATGGGACACAAAA
Position: -135
Score: 4
Sequence: ATCTGTGACACCCTTAGCAAAA
Locus tag: PANA_0991
PANA_0991 -135 4 ATCTGTGACACCCTTAGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Erwinia amylovora ATCC 49946 EAM_0985 -134 4 AGTTGTGACAGCGTTTGCAAAA
Position: -92
Score: 4.4
Sequence: CAGTGAGATCTGCATCACACTT
Locus tag: PANA_1091
PANA_1091 -92 4.4 CAGTGAGATCTGCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655 b2841 -131 4.4 AATTGGAATATCCATCACATAA
Salmonella typhimurium LT2 STM3016 -271 4 TTTTATGATCTCATTAGCATAG
-131 4.9 AAGTGTAATATCCATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03264 -191 4.4 AAGTTTAATGTCCATCACAAAA
Enterobacter sp. 638 Ent638_3294 -209 3.7 CGAGATGACATCGATCACATTT
-130 4.1 AATTGGAATATCCATCACAGAA
Position: -113
Score: 4.2
Sequence: AATAGCGATATTTATCACTTTT
Locus tag: PANA_1114
PANA_1114 -113 4.2 AATAGCGATATTTATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655 b0623 -114 4 TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2 STM0629 -114 4.3 TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_02534 -21 4.3 TAACGCGATATTTATCACTTTT
Enterobacter sp. 638 Ent638_1159 -114 3.8 TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946 EAM_1116 -113 3.6 AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1294 -113 3.9 TTTAGCGACTTTTATCACTTTT
Position: -210
Score: 4
Sequence: AAACGTGAGAATGATCACTGTT
Locus tag: PANA_1171
PANA_1171 -210 4 AAACGTGAGAATGATCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638 Ent638_1222 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1168 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3071 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1263 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1357 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2588 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0565 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -23
Score: 4.1
Sequence: ATTTGTGACAAAGACTACACTT
Locus tag: PANA_1230
PANA_1230 -23 4.1 ATTTGTGACAAAGACTACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhP
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b0790 -56 4.2 TTTTGTGACGCCGACTACACTA
Salmonella typhimurium LT2 STM0813 -56 4 TTTTGTGACGACGACTACACTA
Citrobacter koseri ATCC BAA-895 CKO_02337 -56 4 TTTTGTGACGACGACTACACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00818 -56 4.2 TTTTGTGACGTCTACTACACTA
Enterobacter sp. 638 Ent638_1281 -57 4.2 TTTTGTGACGCCGACTACACTT
Position: -140
Score: 4
Sequence: AAGTGTAGTCTTTGTCACAAAT
Locus tag: PANA_1231
PANA_1231 -140 4 AAGTGTAGTCTTTGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhQ
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655 b0791 -98 3.9 TAGTGTAGTCGGCGTCACAAAA
Salmonella typhimurium LT2 STM0814 -98 3.8 TAGTGTAGTCGTCGTCACAAAA
Citrobacter koseri ATCC BAA-895 CKO_02336 -153 3.8 TAGTGTAGTCGTCGTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00819 -97 3.8 TAGTGTAGTAGACGTCACAAAA
Enterobacter sp. 638 Ent638_1282 -98 3.9 AAGTGTAGTCGGCGTCACAAAA
Position: -131
Score: 4.1
Sequence: ACACGCGACCTGTATCACAAAA
Position: -102
Score: 4
Sequence: TAGCGTTAACTACCTCAAATTT
Locus tag: PANA_1332
PANA_1332 -131 4.1 ACACGCGACCTGTATCACAAAA
-102 4 TAGCGTTAACTACCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655 b0880 -180 4 TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2 STM0943 -181 4 TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_02200 -210 3.9 ATCCGCGACATCTGTCACATTA
-181 4 TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00913 -270 4.2 AGAGGTTATGCTCATCACAAAT
-180 4 TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638 Ent638_1397 -209 3.8 ATCCGCGATATCTGTCACATTC
-180 3.9 TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568 Spro_1672 -205 4 TAGCGTTACCTGCTTCAAACTT
-49 3.9 TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320 PMI0688 -163 3.8 AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1592 -194 4.6 TATCGTTATCTATATCAAACTT
Position: -158
Score: 4.1
Sequence: AAATTTGAGGTAGTTAACGCTA
Position: -129
Score: 4.1
Sequence: TTTTGTGATACAGGTCGCGTGT
Locus tag: PANA_1333
PANA_1333 -158 4.1 AAATTTGAGGTAGTTAACGCTA
-129 4.1 TTTTGTGATACAGGTCGCGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -81
Score: 4.1
Sequence: AAATGTGACCGGTGTTAGATTT
Locus tag: PANA_1350
PANA_1350 -81 4.1 AAATGTGACCGGTGTTAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655 b0907 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0977 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02165 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00935 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1427 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2784 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2594 -78 3.5 AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320 PMI0711 -119 3.5 TATTTTTGTGTGCTACACATAA
Position: -228
Score: 4.8
Sequence: AATTTTGATATGACTCACAAAG
Locus tag: PANA_1371
PANA_1371 -228 4.8 AATTTTGATATGACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: Outer membrane protein F precursor
Escherichia coli str. K-12 substr. MG1655 b0929 -242 4.4 AAATATGACGGTGTTCACAAAG
Position: -316
Score: 3.8
Sequence: AAATGAGATTTATCTCAAGCAG
Position: -151
Score: 4.2
Sequence: ATAAGTGCCTCACATCACACTT
Locus tag: PANA_1393
PANA_1393 -316 3.8 AAATGAGATTTATCTCAAGCAG
-151 4.2 ATAAGTGCCTCACATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompA
Ortholog function: outer membrane protein A
Escherichia coli str. K-12 substr. MG1655 b0957 -188 4 ATGCCTGACGGAGTTCACACTT
Salmonella typhimurium LT2 STM1070 -188 4.3 ATGTCTGACGGAGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_02111 -164 4 ATGCCTGACGGAGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00986 -185 3.9 ATGCCTGACAGAGTTCACACTT
Enterobacter sp. 638 Ent638_1469 -189 4 ATGCCTGACGGAGTTCACACTT
Serratia proteamaculans 568 Spro_1754 -195 3.8 TTTTTAGAGCTTTATCACATCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1751 -200 3.9 TCTTATGACACAAATCACATCA
Edwardsiella tarda EIB202 ETAE_1267 -196 3.7 TTTGGTGAGCATAATCACATCG
Position: -148
Score: 4.5
Sequence: AAATTTGATGTACATCAATTTT
Locus tag: PANA_1499
PANA_1499 -148 4.5 AAATTTGATGTACATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655 b1109 -154 3.9 AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2 STM1211 -154 4.1 AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -152 4.1 AAACTTGATGCACATCAATTTT
Enterobacter sp. 638 Ent638_1624 -153 4 AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946 EAM_1473 -55 3.7 TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM y1777 -152 3.8 AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568 Spro_1926 -153 4.3 AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -153 4 TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202 ETAE_2070 -166 4.3 TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320 PMI0875 -157 4.6 TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -154 3.8 GAATTTGATGTTGTTCAATTTT
Position: -101
Score: 4.9
Sequence: TTATGTGAGTTAGTGCACAAAT
Locus tag: PANA_1636
PANA_1636 -101 4.9 TTATGTGAGTTAGTGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655 b1205 -105 4.5 AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2 STM1782 -105 4.4 ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895 CKO_01260 -104 4.1 AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02241 -100 4.1 TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638 Ent638_2343 -119 3.7 TGTTGTGACGAGAGTCATTAAT
-101 4 TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946 EAM_1581 -97 3.9 AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM y2296 -145 3.9 AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568 Spro_1985 -117 4.2 ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2185 -275 3.6 TAGCGTGATTATGAGAACGCTA
-117 3.8 ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2065 -189 4.1 AGTTGTGATCGTGTCCGCAATG
Position: -62
Score: 3.9
Sequence: TATTGTGACCATCATCACTTCC
Locus tag: PANA_1708
PANA_1708 -62 3.9 TATTGTGACCATCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -262
Score: 3.6
Sequence: CTTTTTTATTGTCTTCATAATA
Position: -56
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: PANA_1721
PANA_1721 -262 3.6 CTTTTTTATTGTCTTCATAATA
-56 3.6 TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b1677 -56 3.6 TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2 STM1377 -56 3.6 TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895 CKO_01710 -56 3.6 TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02134 -56 3.6 TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638 Ent638_1767 -56 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946 EAM_1656 -56 3.6 TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568 Spro_2186 -55 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1866 -56 3.6 TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202 ETAE_1852 -55 3.6 TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320 PMI1409 -200 4.4 TTTTGTGAAATAACACGCATTT
Position: -21
Score: 3.6
Sequence: AATTATTAATGCATTCACCTTT
Locus tag: PANA_1732
PANA_1732 -21 3.6 AATTATTAATGCATTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1654 -132 3.6 ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638 Ent638_1793 -186 3.6 TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946 EAM_1665 -145 3.9 AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320 PMI1394 -292 3.6 TAATGTGCATTTATACACTTAT
Position: -315
Score: 4.2
Sequence: GGATGTGCTGGAAATCACAAAA
Position: -97
Score: 4.2
Sequence: TTTTGTGAAGCGTGTCGCCCTA
Locus tag: PANA_1789
PANA_1789 -315 4.2 GGATGTGCTGGAAATCACAAAA
-97 4.2 TTTTGTGAAGCGTGTCGCCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655 b4227 -98 3.7 AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895 CKO_03603 -130 3.7 AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM y0328 -229 3.8 TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568 Spro_4768 -163 4.3 TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4236 -68 3.7 TATTGTTAGCCTACTTACCATA
Position: -126
Score: 3.9
Sequence: ACTTTTGCAATGGATCACAATT
Locus tag: PANA_1824
PANA_1824 -126 3.9 ACTTTTGCAATGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946 EAM_1697 -131 4.1 ACATATGAAGGCCATCACATAA
Yersinia pestis KIM y2095 -146 4.3 ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568 Spro_2244 -132 3.9 ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2274 -133 3.9 ACCTTTGACCAGCTTCACAAAA
Position: -261
Score: 4.2
Sequence: AATTGTGATCCATTGCAAAAGT
Position: -188
Score: 4
Sequence: AGATGTGATACCGCTCTACATT
Locus tag: PANA_1825
PANA_1825 -261 4.2 AATTGTGATCCATTGCAAAAGT
-188 4 AGATGTGATACCGCTCTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655 b1901 -163 4.2 CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895 CKO_01050 -164 4 CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02396 -161 4 CGATGTGATAATGCTCTCGTAT
-72 3.6 TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638 Ent638_2476 -162 3.7 CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946 EAM_1698 -251 4.3 TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM y2096 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568 Spro_2245 -251 3.8 TTTTGTGACGGCTGTCATAAGT
Position: -140
Score: 4
Sequence: AAAAGCGAGTCTAATCACACTT
Locus tag: PANA_1918
PANA_1918 -140 4 AAAAGCGAGTCTAATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: maltodextrin phosphorylase
Escherichia coli str. K-12 substr. MG1655 b3417 -141 4.5 TTAAGTGGTTGAGATCACATTT
Citrobacter koseri ATCC BAA-895 CKO_04838 -139 4 TTAAGTGGCGGCGATCACACTT
Serratia proteamaculans 568 Spro_4636 -139 4.4 AAAAGTGCCTGAGATCACAATT
Position: -103
Score: 4.3
Sequence: AAGTGTGATTAGACTCGCTTTT
Locus tag: PANA_1919
PANA_1919 -103 4.3 AAGTGTGATTAGACTCGCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655 b3418 -142 4.3 AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2 STM3515 -143 4.3 AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_04840 -142 4.3 AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03788 -142 4.4 ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638 Ent638_3831 -142 4.6 AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM y3900 -202 4.6 AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568 Spro_4637 -203 4 AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202 ETAE_3303 -212 3.8 AAATGTGATCAGCCGCAATTTC
Position: -107
Score: 4.7
Sequence: TTATGTGTGTTAAATCACATAT
Locus tag: PANA_1975
PANA_1975 -107 4.7 TTATGTGTGTTAAATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1594 -108 4.1 AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2 STM1488 -65 3.8 AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01593 -107 3.6 AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01574 -104 3.8 AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638 Ent638_1919 -107 3.8 AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946 EAM_1710 -143 4.9 TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM y2110 -146 4.8 TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568 Spro_2283 -111 4.8 ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2258 -226 4.4 ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202 ETAE_1713 -113 4.8 ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320 PMI1292 -126 4.7 ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2226 -119 4.8 TTTCGTGCTGAATATCACATAT
Position: -242
Score: 3.8
Sequence: AATGATGATTTAGATCAATTTA
Locus tag: PANA_2088
PANA_2088 -242 3.8 AATGATGATTTAGATCAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655 b1242 -257 5.1 TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2 STM1748 -256 4.8 TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895 CKO_01319 -167 5 TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02198 -261 4.8 TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638 Ent638_2303 -256 4 AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946 EAM_1899 -158 3.8 AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568 Spro_2703 -268 5.2 TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320 PMI1485 -290 5.3 TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu2495 -295 4.9 TATATTGATCTTAATCACATAA
Position: -217
Score: 4.1
Sequence: TAAATTGATCTAAATCATCATT
Locus tag: PANA_2089
PANA_2089 -217 4.1 TAAATTGATCTAAATCATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -241 5 AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2 STM1749 -242 4.9 AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895 CKO_01318 -242 4.9 AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -237 4.7 ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638 Ent638_2304 -253 4.1 TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946 EAM_1900 -223 3.9 ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM y2023 -286 5.3 TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568 Spro_2704 -278 5.1 TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -315 4.5 AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202 ETAE_1508 -265 5 TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320 PMI1486 -246 5.4 TATTGTGATGTAGATCACTTTA
-187 3.7 AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -237 3.7 TATTTTTATTAGATTAAAAATT
-138 4.6 TTATGTGATTAAGATCAATATA
Position: -136
Score: 5.1
Sequence: AAAGGTGATCGAGTTCACAAAT
Locus tag: PANA_2109
PANA_2109 -136 5.1 AAAGGTGATCGAGTTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655 b1778 -137 5.2 AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2 STM1291 -107 4.7 TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895 CKO_01799 -107 4.9 AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01198 -135 5.1 AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638 Ent638_1676 -137 5.2 ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946 EAM_1930 -137 5.2 AATGGTGATCTGCATCACAATT
Yersinia pestis KIM y2164 -85 5.1 ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568 Spro_2727 -143 5.7 ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2343 -135 5.6 TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202 ETAE_1484 -91 4.9 GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320 PMI1503 -137 5.3 TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2557 -267 4.6 ATATGCGAGTCACATCACAATA
Position: -217
Score: 5.1
Sequence: ATTTGTGAACTCGATCACCTTT
Locus tag: PANA_2110
PANA_2110 -217 5.1 ATTTGTGAACTCGATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b1779 -226 5.3 AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2 STM1290 -226 4.8 AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_01800 -226 5 AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -225 5.2 AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638 Ent638_1675 -225 5.7 AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1931 -215 5.4 AATTGTGATGCAGATCACCATT
Yersinia pestis KIM y2165 -218 5.1 AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568 Spro_2728 -227 5.6 ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -235 5.8 AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202 ETAE_1483 -227 5.1 TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320 PMI1504 -226 5.6 AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -224 5.4 TATTGTGATGTGACTCGCATAT
Position: -65
Score: 3.9
Sequence: TTTAGTGATGGACTTCGCAACC
Locus tag: PANA_2133
PANA_2133 -65 3.9 TTTAGTGATGGACTTCGCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655 b1805 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1818 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02322 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1956 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2236 -80 4.1 AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568 Spro_2760 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2372 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1166 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2134 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -223
Score: 3.7
Sequence: TATTGTGAGCGGGCGCAACCTG
Locus tag: PANA_2253
PANA_2253 -223 3.7 TATTGTGAGCGGGCGCAACCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655 b1015 -207 3.6 AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2 STM1125 -204 3.6 AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895 CKO_02041 -80 3.6 AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638 Ent638_1542 -249 3.7 TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568 Spro_2930 -211 3.9 AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4218 -130 3.7 TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320 PMI1615 -220 3.8 TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1958 -243 4.4 AAATGTGATTCAGTAAACGTTT
Position: -93
Score: 4.2
Sequence: ATTAGCGATCCAGATCTCACTT
Locus tag: PANA_2309
PANA_2309 -93 4.2 ATTAGCGATCCAGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: trg
Ortholog function: Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
Escherichia coli str. K-12 substr. MG1655 b1421 -201 3.4 TTGCGTGCTGTTTTCCAGAATT
Citrobacter koseri ATCC BAA-895 CKO_01456 -108 3.7 AAATGTGACAAACATTCCGATT
Enterobacter sp. 638 Ent638_1961 -110 3.5 AAGTGTGACCCACCTGGCGCTT
Position: -164
Score: 4.1
Sequence: AAAAATGATCAGCGTCGCATTT
Locus tag: PANA_2324
PANA_2324 -164 4.1 AAAAATGATCAGCGTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yedJ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1962 -287 4.6 TGGTGTGATCAGGCGCACATTA
Salmonella typhimurium LT2 STM1993 -70 5.5 AAATGTGATTAATATCACATTA
-34 4.4 TCATATGACTTACATCACAAAA
Citrobacter koseri ATCC BAA-895 CKO_00980 -168 3.8 TTTTGTGAATGTTTTATCGTAA
Erwinia amylovora ATCC 49946 EAM_2082 -129 3.8 TGATGTAATGAGCAACAAATAA
-101 4.4 AAGTTTGATGTGGCTAAAATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0518 -156 5.6 AAATGTGATGTGAATCACACAA
Position: -127
Score: 4.2
Sequence: TTCTGTGAGCTGTCTCACGAAC
Locus tag: PANA_2438
PANA_2438 -127 4.2 TTCTGTGAGCTGTCTCACGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655 b3904 -162 3.8 AAATGCGGTGAGCATCACATCA
-127 4.4 AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2 STM4047 -247 3.9 AAGGGTTATCGGCCTCACCTTA
-127 4.1 AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895 CKO_03100 -182 4.5 AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04213 -128 4.2 AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638 Ent638_4067 -129 4.2 AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM y0587 -234 4.2 AACTGTGAGCTGTTTCACTTTC
Position: -297
Score: 4.1
Sequence: GTTCGTGAGACAGCTCACAGAA
Position: -261
Score: 4.1
Sequence: AGTTGTGAGCTTTGCCGCATTT
Locus tag: PANA_2439
PANA_2439 -297 4.1 GTTCGTGAGACAGCTCACAGAA
-261 4.1 AGTTGTGAGCTTTGCCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655 b3905 -182 4.5 GAACGTGATGATGTTCACAATT
-147 4.5 TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2 STM4048 -182 4.3 GAACGTGATAGCGTTCACAGTT
-147 4 CGGTGTGATGTCGTCCGCATTT
-62 3.8 TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895 CKO_03099 -194 4.5 GAACGTGATAGCGTTCACAATT
-34 4.3 ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04214 -204 3.8 GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638 Ent638_4066 -194 4.2 GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM y0590 -214 3.9 GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0441 -144 3.9 CGGTGTGATCCTTGCCACACTT
Position: -76
Score: 3.5
Sequence: ATTTGTGATCTTTATGTTGAAA
Locus tag: PANA_2441
PANA_2441 -76 3.5 ATTTGTGATCTTTATGTTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose-proton symport
Escherichia coli str. K-12 substr. MG1655 b3907 -145 4.1 AGATGTGAAGCAAATCACCCAC
Salmonella typhimurium LT2 STM4050 -293 3.6 TTATGTGACCTCACGCAGCGTT
-149 3.9 AAACGTGAAGTTAATCACTTCA
Citrobacter koseri ATCC BAA-895 CKO_03094 -148 4.1 ATATGTGAGCCAAATCACCCGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04216 -149 4.7 TTTTGTGATGTAGAACAACTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0450 -193 3.6 TTTTGTGATCCTGCCTATATCA
Position: -94
Score: 4.3
Sequence: TTATGTGAATAAGAACACGTTT
Locus tag: PANA_2459
PANA_2459 -94 4.3 TTATGTGAATAAGAACACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbJ
Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Escherichia coli str. K-12 substr. MG1655 b2736 -90 4.9 TTATGTGAATCAGATCACCATA
Salmonella typhimurium LT2 STM2918 -90 4 TTTTGTGAAACAACTCACCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01605 -91 5 ATTCGTGATAACTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1106 -90 4.4 TGATGTGAAGTTTATCACTAAT
Serratia proteamaculans 568 Spro_1492 -92 4.1 AATTGTGACAACGATCGCTGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4327 -92 4.5 TTATGTGATAAAAATCACCACA
Edwardsiella tarda EIB202 ETAE_1922 -93 3.9 ATTTGTGAGGATAAACACGGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2507 -147 3.8 ATAAATAATATAAATCAAATAA
-90 3.7 GAATGTGATAACCATCGTGTAT
Position: -186
Score: 4.7
Sequence: AAACGTGTTCTTATTCACATAA
Locus tag: PANA_2460
PANA_2460 -186 4.7 AAACGTGTTCTTATTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbI
Ortholog function: Hypothetical transcriptional regulator ygbI
Escherichia coli str. K-12 substr. MG1655 b2735 -166 3.7 TTGTTTGATATTGTGAATATAA
-127 5.2 TATGGTGATCTGATTCACATAA
Salmonella typhimurium LT2 STM2919 -128 4 TGCGGTGAGTTGTTTCACAAAA
-87 3.6 TTTTGTGAAGGCAATCCTCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01606 -271 3.6 TAATGTGATTTAATGATAGAAT
-230 4.7 ATATGTGAGAGTTATCACGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_pKPN4p07051 -233 3.6 TAATGTGATTTAATGATAGAAT
-192 4.7 TTATGTGAGAGTTATCACGAAT
Erwinia amylovora ATCC 49946 EAM_1104 -238 4.5 ATTAGTGATAAACTTCACATCA
Serratia proteamaculans 568 Spro_1493 -211 3.9 ATCAGCGATCGTTGTCACAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4325 -267 4.8 TGTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202 ETAE_1921 -132 3.9 AACCGTGTTTATCCTCACAAAT
Position: -313
Score: 4.7
Sequence: ATCTGTGATTGTATTCACAGTT
Locus tag: PANA_2541
PANA_2541 -313 4.7 ATCTGTGATTGTATTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655 b2150 -270 4.5 ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895 CKO_00641 -270 4.7 ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02588 -239 4.8 ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638 Ent638_2750 -271 4.4 ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM y2662 -212 4.4 ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568 Spro_1563 -229 4.4 ATCTGTGAGAAAATTCACAGAT
Position: -96
Score: 4.3
Sequence: TGATGTGACGTAATTCACGCTG
Locus tag: PANA_2542
PANA_2542 -96 4.3 TGATGTGACGTAATTCACGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b2151 -146 3.5 GATAACGATCTGGATCACATTC
-95 3.9 TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2 STM2191 -154 3.5 GATAACGATCTGGATCACATTC
-103 3.5 CCCTGTGATGTTTCTCACGCAG
-38 3.3 ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895 CKO_00640 -157 3.5 GATAACGATCTGGATCACATTC
-106 3.4 CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02589 -160 3.3 GATAACGATCTCGATCACAATC
-109 3.4 CCGTGTGACCTCACTCACGCAG
-33 3.6 TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638 Ent638_2751 -160 3.4 GATAACGATCTGGATCACAATC
-109 4.1 CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946 EAM_2208 -110 3.4 GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568 Spro_1562 -135 3.4 AATTGAGATCTGGCGCAGGTAG
-84 3.5 TCCTGTGACGGGATTCACGCAG
Position: -177
Score: 3.8
Sequence: AATTGTGCGTAATGTCAAAGAT
Position: -157
Score: 3.6
Sequence: ATCTGTTATGCCGTTTACGCAT
Position: -4
Score: 3.6
Sequence: AATTATGTTCCAGCTCGAATTG
Locus tag: PANA_2559
PANA_2559 -177 3.8 AATTGTGCGTAATGTCAAAGAT
-157 3.6 ATCTGTTATGCCGTTTACGCAT
-4 3.6 AATTATGTTCCAGCTCGAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655 b2169 -178 4.3 AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2 STM2206 -177 4.6 AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_00613 -50 4.1 AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02600 -177 3.5 AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638 Ent638_2763 -178 4.3 AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946 EAM_2223 -179 4.4 AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM y2887 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568 Spro_3230 -177 4 AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2729 -180 4.1 AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202 ETAE_2303 -199 4.1 AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1992 -180 4.7 AAATGTGAGTAATCTCAAAAAA
Position: -257
Score: 4.4
Sequence: AAGTTTGATAAGTATCAAAAAA
Position: -130
Score: 4.2
Sequence: AAATGTGGTGATTTACACATTT
Locus tag: PANA_2568
PANA_2568 -257 4.4 AAGTTTGATAAGTATCAAAAAA
-130 4.2 AAATGTGGTGATTTACACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b2175 -130 4.1 TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2 STM2214 -128 3.7 ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02608 -292 3.6 TAGGGTAATCTCGTTCTCGTTT
-234 4.2 AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638 Ent638_2771 -250 3.6 AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM y2908 -128 3.7 GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2735 -159 3.9 TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202 ETAE_2298 -131 4.4 AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320 PMI0831 -129 4.2 TTACGTGCTTTAGAGCACGTTT
Position: -132
Score: 4.4
Sequence: AAGTGAGATTTAACTCGCAAAT
Locus tag: PANA_2574
PANA_2574 -132 4.4 AAGTGAGATTTAACTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2181 -158 3.7 AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02614 -204 3.8 AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946 EAM_2233 -177 3.6 AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM y2914 -238 4.4 AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568 Spro_3250 -214 4.2 AAATGCGAGCTGAGTCGCAAAA
-121 4.1 GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2740 -178 4 ATTCGTGATCAGTTTGGCATTA
-101 3.8 TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2865 -185 4.1 AAATGAGAGATTGATCTCACTT
-183 3.6 ATGAGAGATTGATCTCACTTTT
-141 3.8 TAATGTAATACTATAAACACAA
Position: -64
Score: 3.7
Sequence: ATATTTGAAGGATGTTACGTAA
Locus tag: PANA_2643
PANA_2643 -64 3.7 ATATTTGAAGGATGTTACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: putative cytoplasmic protein
Escherichia coli str. K-12 substr. MG1655 b2295 -263 3.6 ATTTATGATTAACATCATGCAC
-54 4.1 AGTTGTGAATTTGCACAAATTT
Erwinia amylovora ATCC 49946 EAM_2300 -44 4 TTGTGTGTTTTTTTTAAAATTT
Edwardsiella tarda EIB202 ETAE_2396 -34 3.6 TTTTTTAACTCTTATCGAATAA
Proteus mirabilis HI4320 PMI1770 -290 3.7 ATTAATGATACGCATCATGCTT
-260 3.6 AAACTTGATGCTAATTATAGTT
Position: -279
Score: 4.1
Sequence: TTACGTAACATCCTTCAAATAT
Locus tag: PANA_2644
PANA_2644 -279 4.1 TTACGTAACATCCTTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: acetate kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -95 3.8 AGGCATGATGTTAATCATAAAT
Enterobacter sp. 638 Ent638_2840 -96 3.8 TGGCATGATGTTAATCATAAAT
Serratia proteamaculans 568 Spro_3316 -125 3.8 TCACATGATGTTAATCATAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -95 4.2 AGGTATGATGTTAATCATAAAT
Proteus mirabilis HI4320 PMI1771 -123 3.6 AAGCATGATGCGTATCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -121 3.6 TAGCATGATGTTAATCATTTAA
Position: -182
Score: 4.4
Sequence: CTAAGTGACGAATATCACAATA
Position: -160
Score: 4.3
Sequence: AAATTTGATGTGGATCAGTTTT
Position: -107
Score: 4
Sequence: AAGTGTTAAGCAGATCGAATTT
Locus tag: PANA_2696
PANA_2696 -182 4.4 CTAAGTGACGAATATCACAATA
-160 4.3 AAATTTGATGTGGATCAGTTTT
-107 4 AAGTGTTAAGCAGATCGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655 b2344 -269 4.8 ATAAGTGACCGAAATCACACTT
-247 3.9 AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2 STM2391 -262 4.8 TTAAGTGACCGAAATCACACTT
-240 3.9 AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895 CKO_00446 -263 4.8 ATAAGTGACCGAAATCACACTT
-241 3.9 AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02726 -264 4.7 TTAAGTGACAGAAATCACACTT
-242 3.9 AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638 Ent638_2884 -269 4.2 GTAAGTGACCGATATCACACTA
-247 4 AAAAATGATCTAGCGCAAAAAT
-214 3.7 ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946 EAM_2348 -194 3.9 TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568 Spro_3381 -271 5.1 TTAAGTGATGGAAATCACAAAT
-196 3.8 TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3081 -332 3.8 AATTTTTATCTTCCTTATATTT
-262 4.9 TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320 PMI1810 -326 3.7 AAGTGTTAATTATCTATCATAA
-186 4.2 TAATGTTAACTAAATCCCAAAT
Position: -339
Score: 4.2
Sequence: TTTTGTGGCGCAGATCTCACTT
Locus tag: PANA_2763
PANA_2763 -339 4.2 TTTTGTGGCGCAGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655 b2415 -209 3.9 TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2 STM2431 -209 4.4 TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02762 -206 4 TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638 Ent638_2943 -271 4.4 TTTTGTGGTCCACTTCAAACTT
-144 4 TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568 Spro_3448 -149 3.6 TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320 PMI1828 -275 4.4 TTTTGTGGTAGAGATCAAACTT
-115 3.6 TAACGTAACATGGCTTATATTA
Position: -103
Score: 3.8
Sequence: TTTTGTGACCCGCCTTAAACCT
Locus tag: PANA_2875
PANA_2875 -103 3.8 TTTTGTGACCCGCCTTAAACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: csiE
Ortholog function: Stationary phase inducible protein CsiE
Escherichia coli str. K-12 substr. MG1655 b2535 -104 3.5 TTCTGTGACGCTTGCCAACATT
Salmonella typhimurium LT2 STM2553 -106 3.8 TTCTGTGACACTCCTCAGCATT
Citrobacter koseri ATCC BAA-895 CKO_00245 -105 3.4 TTCTGTGATGCTCGCCAGCATT
-42 3.6 TTTAGCTATCCTTATCAAACAA
Erwinia amylovora ATCC 49946 EAM_2496 -103 3.4 TTTTGTGACCTGCCTTAAAAGC
Yersinia pestis KIM y1328 -161 4.1 TAATGTAACACATAGCGCATTA
Serratia proteamaculans 568 Spro_3633 -276 3.4 AAAGGTGGTGTTCATATCAATA
Position: -83
Score: 5.4
Sequence: TTTTGTGATCAAAATCACACAT
Locus tag: PANA_3014
PANA_3014 -83 5.4 TTTTGTGATCAAAATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655 b2597 -81 4.8 TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895 CKO_03918 -40 5.2 TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02919 -88 5.6 AAATGTGATTTATATCACACAT
Enterobacter sp. 638 Ent638_3076 -81 5.4 ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946 EAM_2617 -83 5.2 AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568 Spro_0882 -83 4.8 ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3349 -86 4 AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202 ETAE_2834 -82 3.8 ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320 PMI0391 -82 4.6 AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1266 -87 5.1 AATAGTGATTTAGATCACCTTT
Position: -296
Score: 4.7
Sequence: TTCTGTGATTTTGCTCACACAG
Locus tag: PANA_3103
PANA_3103 -296 4.7 TTCTGTGATTTTGCTCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdA
Ortholog function: D-serine dehydratase
Escherichia coli str. K-12 substr. MG1655 b2366 -154 4.4 TAAAGTGAACCATATCTCAATT
Salmonella typhimurium LT2 STM3802 -153 4 TAAAATGAACCATATCGCAAAA
-123 4.2 ATATTAGATGGAAATCACATAG
Citrobacter koseri ATCC BAA-895 CKO_00021 -124 4 TTATTGGATGCAAATCACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04081 -152 4.3 TAATTTGACCCATAGCATATTT
-122 3.7 CTTTTAGAGCTAAATCACCTTT
Serratia proteamaculans 568 Spro_2515 -123 3.7 TAAATTGACGAGCATCATCTTT
Proteus mirabilis HI4320 PMI0187 -126 4.4 ATTTGTGCATCTGATCACCTAT
-44 3.6 ATATTCAATATGTTTAACAATA
Position: -212
Score: 4.7
Sequence: TTTGGTGACTTATGTCACATAA
Locus tag: PANA_3196
PANA_3196 -212 4.7 TTTGGTGACTTATGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2913 -210 4.1 TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2 STM3062 -217 4.5 TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03348 -214 4.6 TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638 Ent638_3332 -215 4.1 TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM y3301 -126 4.8 TTTGGTGATATATATCACATTC
Serratia proteamaculans 568 Spro_3923 -215 4.4 TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3905 -214 3.9 TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320 PMI2031 -210 4 TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1 plu3605 -207 4.4 TTTAGTGATATATTTCATATCT
-178 4.2 TTATTTGATCTAAATCCTAATT
-105 4.4 TTATGTGATGGGAATAGCAATC
Position: -198
Score: 4.8
Sequence: TTTTGTGATGTAGATCCAAAAA
Locus tag: PANA_3205
PANA_3205 -198 4.8 TTTTGTGATGTAGATCCAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2927 -213 4.7 AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2 STM3070 -213 5 AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_04297 -213 4.8 AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03356 -213 4.8 AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638 Ent638_3340 -215 4.5 AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946 EAM_2813 -208 4.1 TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM y3309 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3913 -194 4.1 TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202 ETAE_2958 -233 4.9 AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320 PMI0241 -253 4.4 AAATGTTAACAAGAGCACATTT
Position: -21
Score: 3.4
Sequence: ATTGGTAAGGTAAAGAACATAA
Locus tag: PANA_3210
PANA_3210 -21 3.4 ATTGGTAAGGTAAAGAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655 b2942 -200 3.6 GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2 STM3090 -200 3.9 CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_04317 -199 3.5 CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03375 -199 4.3 AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638 Ent638_3346 -199 4.4 TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320 PMI2095 -275 3.5 CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3683 -205 3.3 GTTTATACTCGCAATCACATAA
Position: -347
Score: 4.1
Sequence: TAATGTGTTAACGCTTACAATT
Position: -124
Score: 4.8
Sequence: CAATGTGATCGGGTTCACTTTT
Locus tag: PANA_3211
PANA_3211 -347 4.1 TAATGTGTTAACGCTTACAATT
-124 4.8 CAATGTGATCGGGTTCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galP
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655 b2943 -156 3.6 TATGATGATATAACTCAATTAT
-82 4.9 TGATGTGATTTGCTTCACATCT
Salmonella typhimurium LT2 STM3091 -83 4.6 CATTGTGATTAGCCTCACATCT
Citrobacter koseri ATCC BAA-895 CKO_04318 -83 5.3 TAACGTGATTCGAATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03376 -84 3.8 AGCCGTGATTATAGTCACGTTT
Enterobacter sp. 638 Ent638_3347 -171 3.9 TATTGGGATGCACATCAACTCT
-102 3.7 TAGTGTAACCGATTACACCAAT
-84 5.3 CAATGTGATTTATCTCACATAT
Erwinia amylovora ATCC 49946 EAM_2827 -152 4.1 TCATGTGATCTGTCGCACAGTC
Serratia proteamaculans 568 Spro_1160 -276 4.5 TGGTGTGATATCGGTTACATTT
-100 3.6 TTGTGTAATCGTTTCCACTAAT
-82 4.6 TAATGTGATCGCACTCACTTAC
Edwardsiella tarda EIB202 ETAE_2966 -275 3.7 CAAAGTGAAAACGATTACATTT
-61 4.5 TTATGTGATCATGCGCACTTTA
Position: -4
Score: 3.6
Sequence: TTTTTTGACTTGTCGCGCGCTT
Locus tag: PANA_3299
PANA_3299 -4 3.6 TTTTTTGACTTGTCGCGCGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoB
Ortholog function: phosphopentomutase
Escherichia coli str. K-12 substr. MG1655 b4383 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4569 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03408 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04839 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0543 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0617 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3741 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0662 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0729 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2414 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -112
Score: 3.9
Sequence: AAATGTTATAATAGTAACATTC
Position: -4
Score: 4.1
Sequence: CGATGTGACGAATGGCACATAT
Locus tag: PANA_3301
PANA_3301 -112 3.9 AAATGTTATAATAGTAACATTC
-4 4.1 CGATGTGACGAATGGCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4567 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03410 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0541 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0615 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3743 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0660 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2416 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -91
Score: 4.1
Sequence: TTTTATGATGTTTCTCACACCC
Locus tag: PANA_3448
PANA_3448 -91 4.1 TTTTATGATGTTTCTCACACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655 b3081 -112 3.9 CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2 STM3219 -113 4.3 TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895 CKO_04487 -113 4.3 TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -111 3.9 TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638 Ent638_3539 -111 3.9 ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946 EAM_0507 -169 3.8 AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM y3589 -131 4 ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568 Spro_4309 -126 4.2 ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320 PMI3702 -213 3.8 TATTATTATATGATTAAAAAAT
-103 3.8 TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -161 4.3 TTTCATGACCTTCATCACATTC
Position: -94
Score: 4.5
Sequence: AAATGTGACCTGAGTCGTAAAA
Locus tag: PANA_3456
PANA_3456 -94 4.5 AAATGTGACCTGAGTCGTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -232 4.5 AAAGGTGAGAGCCATCACAAAT
-110 4.4 TTTATTGATCTAACTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_04494 -169 4.6 AAAGGTGAGTGACATCACAAAT
-47 4.3 TTTATTGATCCAACTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -251 3.8 AAAGTTGAGAGCTGTCACAAAA
-129 4.4 TTTATTGATCTAACTCACGAAA
Enterobacter sp. 638 Ent638_3546 -231 4.6 AAAGGTGAGTGACATCACAAAA
-109 4.4 TTTATTGATCTAACTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -229 4.1 AAAGTTGAGTGATATCACAAAA
-109 3.8 TTTTGCGATCATGACCTCACAA
-86 3.7 TCCTGTGAGATATTGCGCATAA
Position: -204
Score: 4.8
Sequence: TTTTGTGATGGCTTTCAACTTT
Locus tag: PANA_3457
PANA_3457 -204 4.8 TTTTGTGATGGCTTTCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Escherichia coli str. K-12 substr. MG1655 b3093 -274 4.2 TTTCGTGAGTTAGATCAATAAA
-152 5.1 ATTTGTGATGGCTCTCACCTTT
Citrobacter koseri ATCC BAA-895 CKO_04495 -250 5.2 ATTTGTGATGTCACTCACCTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03521 -263 4.4 TTTTGTGACAGCTCTCAACTTT
Enterobacter sp. 638 Ent638_3547 -261 4.2 TTTCGTGAGTTAGATCAATAAA
-139 5.2 TTTTGTGATGTCACTCACCTTT
Serratia proteamaculans 568 Spro_4322 -180 4.8 TTTTGTGATATCACTCAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0644 -208 4.8 TTTTGTGATATCACTCAACTTT
Position: -214
Score: 4.6
Sequence: AATCGTGATGAAGATAACGTTT
Locus tag: PANA_3516
PANA_3516 -214 4.6 AATCGTGATGAAGATAACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655 b4214 -126 3.6 AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2 STM4404 -144 3.9 TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895 CKO_03615 -178 4.1 TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04608 -178 4.1 TTTTATGAGCGATAGCACAGAA
-126 3.7 AAATGTGAATCTTGCCAGAAAA
-57 3.9 TGATGCGATATAAATAAAACAA
Enterobacter sp. 638 Ent638_0393 -167 3.9 TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946 EAM_0455 -158 4.2 AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568 Spro_0454 -180 3.7 AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3601 -258 3.7 TAAAGTGATTATCGTCTCTAAA
Position: -78
Score: 4.5
Sequence: AAACGTTATCTTCATCACGATT
Locus tag: PANA_3517
PANA_3517 -78 4.5 AAACGTTATCTTCATCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655 b4213 -118 3.8 AACTGTGATAGTGTCATCATTT
-85 3.8 AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2 STM4403 -145 3.7 TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_03616 -25 4.2 TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04607 -156 3.8 TTGTTTTATTTATATCGCATCA
-87 3.7 TTTTCTGGCAAGATTCACATTT
-35 4.2 TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638 Ent638_0392 -34 4 TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM y0653 -148 3.6 AACTGTGAGCGTCTACGCGTTA
-116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568 Spro_0453 -95 3.8 TTTTCTGCCACACTTCACAGTT
Position: -215
Score: 5.1
Sequence: AAAAGTGATTTAGATCACATTC
Locus tag: PANA_3558
PANA_3558 -215 5.1 AAAAGTGATTTAGATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3242 -167 5.4 AAAAGTGATTTAGATCACATAA
Salmonella typhimurium LT2 STM3366 -166 5.4 AAAAGTGATTTAGATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_04650 -168 5.4 AAAAGTGATTTAGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03651 -116 5.2 AAAAGTGATTTAGATCACACAT
-63 3.7 TATTGTTAGCTACATAATAAAC
Enterobacter sp. 638 Ent638_3679 -165 5.4 AAAAGTGATTTAGATCACATAT
Yersinia pestis KIM y0179 -269 5.2 AAAAGTGATTTAGATCACACAT
Serratia proteamaculans 568 Spro_4392 -293 5.1 AAAAGTGATTTAGATCACAGAT
-89 3.8 ATTTGTGGTGCGTGTCAGCTAA
Position: -37
Score: 4.7
Sequence: GAATGTGATCTAAATCACTTTT
Locus tag: PANA_3559
PANA_3559 -37 4.7 GAATGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3243 -37 5.3 TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2 STM3367 -37 5.3 TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_04651 -37 5.3 ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03652 -55 5.1 ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638 Ent638_3680 -37 5.3 ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946 EAM_3128 -37 5.3 AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM y0180 -55 5.1 ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568 Spro_4393 -37 4.9 ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0276 -37 5.1 TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202 ETAE_3129 -131 4.5 ATCTGTGACGCAAATCACTTTT
Position: -289
Score: 4.1
Sequence: TATTGTAATCGTGCCCAAAATA
Position: -231
Score: 3.2
Sequence: AAGCGTGTTTCCATTCAGGAAA
Locus tag: PANA_3652
PANA_3652 -289 4.1 TATTGTAATCGTGCCCAAAATA
-231 3.2 AAGCGTGTTTCCATTCAGGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3356 -187 4.2 TAATGTGACGTCCTTTGCATAC
Salmonella typhimurium LT2 STM3465 -188 3.9 TAATGTGATGTCCTCTGCATAC
Citrobacter koseri ATCC BAA-895 CKO_04775 -187 3.3 GAATGTGATGTCCTCTGCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03742 -188 3.5 TAATGTGAACTCCTCTGCATAC
Serratia proteamaculans 568 Spro_4579 -280 3.3 GGTTTTGAGGCGTGTCATAAAT
Position: -94
Score: 3
Sequence: TTTCCTGAATGGAAACACGCTT
Position: -36
Score: 3.5
Sequence: TATTTTGGGCACGATTACAATA
Locus tag: PANA_3653
PANA_3653 -94 3 TTTCCTGAATGGAAACACGCTT
-36 3.5 TATTTTGGGCACGATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -262
Score: 3.8
Sequence: AATAGTAATGTAAATCATTTAA
Locus tag: PANA_3675
PANA_3675 -262 3.8 AATAGTAATGTAAATCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655 b3397 -53 3.7 AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895 CKO_04820 -54 4.1 AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03768 -54 4 AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638 Ent638_3810 -55 3.6 AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM y3923 -247 4.5 CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568 Spro_4612 -135 4.4 CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202 ETAE_3268 -116 3.6 AAATATGAGCATCTGCGCACAA
Position: -142
Score: 3.6
Sequence: TTAAATGATTTACATTACTATT
Locus tag: PANA_3676
PANA_3676 -142 3.6 TTAAATGATTTACATTACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655 b3398 -288 3.6 TTGTGCGATATCGGACACGCTT
-123 3.8 TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2 STM3495 -238 3.6 TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895 CKO_04821 -290 3.9 TTGTGCGATATACAGCACGGTT
-238 3.7 TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03769 -282 3.8 TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638 Ent638_3811 -287 3.7 TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM y3922 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Position: -52
Score: 4.8
Sequence: TTGCGTGATATGGATAACATTA
Locus tag: PANA_3695
PANA_3695 -52 4.8 TTGCGTGATATGGATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpE
Ortholog function: thiosulfate sulfurtransferase
Escherichia coli str. K-12 substr. MG1655 b3425 -95 4.7 TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2 STM3525 -104 4.7 TAGAGTGATATGTATAACATTA
Citrobacter koseri ATCC BAA-895 CKO_04844 -108 4.6 TAGAGTGATACATATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03791 -107 4.3 TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638 Ent638_3834 -257 3.8 ATGTTCGATATCGCTCATAATA
-196 4.6 TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946 EAM_3264 -134 3.9 ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1 plu0197 -102 3.6 TAACGTATTACTGATAACAAAT
Position: -127
Score: 4.7
Sequence: TAATGTTATCCATATCACGCAA
Position: -35
Score: 3.5
Sequence: ATAAGTGAACTATTCCGAACAT
Locus tag: PANA_3696
PANA_3696 -127 4.7 TAATGTTATCCATATCACGCAA
-35 3.5 ATAAGTGAACTATTCCGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b3426 -116 4.4 TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2 STM3526 -116 4.4 TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895 CKO_04845 -116 4.5 TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03792 -119 3.7 ATATGTTACACCCATCACTTCA
-58 3.7 TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638 Ent638_3835 -116 4.4 TTATGTTATCTCTATCACTCAA
-55 4 TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946 EAM_3265 -124 4 AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM y3891 -129 4.4 AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568 Spro_4642 -129 3.6 AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4141 -144 4.3 TAATGTGACAACTATCATCATA
-124 4.4 TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202 ETAE_3312 -124 4.3 TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320 PMI2930 -129 4.4 AATTGTTATTTATATCACGCAG
Position: -132
Score: 4.6
Sequence: TTTTATGAAGCAGCTCACACTT
Locus tag: PANA_3705
PANA_3705 -132 4.6 TTTTATGAAGCAGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: gluconate kinase 1
Erwinia amylovora ATCC 49946 EAM_3275 -129 4.6 TTTTTTGACAGTCTTCACACTT
Position: 0
Score: 3.9
Sequence: TTGTGTGATGGATTTAGCATGA
Locus tag: PANA_3805
PANA_3805 0 3.9 TTGTGTGATGGATTTAGCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: b1821
Ortholog function: hypothetical protein
Salmonella typhimurium LT2 STM1834 -276 3.7 AATTGTTATTTAATTTAACGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2389 -267 3.8 TAGTGTTGTTTGCATCATAAAT
Proteus mirabilis HI4320 PMI1608 -272 3.8 AATTATTATCAATATCATCTTT
-237 3.9 TAATATGTTGCCTTTCATAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2701 -281 3.9 TATTGTGCTATCTTTTAAATTG
-179 3.7 AAACGTGGTGCGGGTAACCTTA
Position: -29
Score: 3.6
Sequence: AATAGTGAATAAAAATACATTA
Locus tag: PANA_3843
PANA_3843 -29 3.6 AATAGTGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2 STM4121 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03036 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4028 -44 3.8 AAATGTGAATAAAAATACACTA
Yersinia pestis KIM y0310 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4781 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3482 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3237 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -65
Score: 3.8
Sequence: TAATGTATTTTTATTCACTATT
Locus tag: PANA_3844
PANA_3844 -65 3.8 TAATGTATTTTTATTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -66 3.7 TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2 STM4120 -66 3.9 TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895 CKO_03037 -27 4.3 TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -27 4 TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638 Ent638_4029 -66 4.2 TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946 EAM_0137 -66 3.8 TATTGTATTTTTATTCACTATT
Yersinia pestis KIM y0309 -223 3.6 TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568 Spro_4782 -71 4.3 TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -65 4 TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202 ETAE_3483 -65 3.9 TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320 PMI3236 -65 3.9 TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -65 3.9 TAATGTATTTTTATTCAAAAAA
Position: -152
Score: 3.7
Sequence: GGTTGTGAGAGGGATCGAAAAA
Locus tag: PANA_3853
PANA_3853 -152 3.7 GGTTGTGAGAGGGATCGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655 b3934 -128 3.9 AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895 CKO_03060 -129 3.8 AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04229 -162 3.6 TCTTGCGAGCCGGATCGAAAAA
-143 3.9 AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM y0297 -177 3.7 TTCTGCGAGCCAGTTCGAAAAA
-135 3.6 TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202 ETAE_3434 -258 4.2 AAGTGCGATCGGGATCGAAAAA
-175 3.6 ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320 PMI3218 -207 4.3 TTTTGCGAACTACCTCATAAAA
-189 3.9 AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4760 -213 4.2 ATTTGCGAGCCATATCGAATAA
-195 4.6 ATAAATGATTTATATCACACTT
Position: -151
Score: 4.3
Sequence: TTTTTTGACACACTACACAAAA
Locus tag: PANA_3859
PANA_3859 -151 4.3 TTTTTTGACACACTACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Erwinia amylovora ATCC 49946 EAM_0119 -146 4.1 TTTCATGACGCGGTACACATTT
Position: -214
Score: 4.5
Sequence: CAAAGTGATTATCATCACAAAA
Locus tag: PANA_4223
PANA_4223 -214 4.5 CAAAGTGATTATCATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ascF
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2715 -177 4.2 TCAGGTGACCGGTTTCACAAAT
Citrobacter koseri ATCC BAA-895 CKO_04070 -179 4.4 ACAAGTGATCATTCTCACAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03051 -168 4.1 CTTAGCGATCAAAATCACAAAA
Enterobacter sp. 638 Ent638_3188 -128 4.4 CAAAGTGATCGTTATCACGAAT
-54 3.7 TTTTGTGAAACCGGTTTCCTAT
Serratia proteamaculans 568 Spro_0576 -189 4.4 AAAAGTGACCACCATCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2165 -255 3.9 CATGGCGATCGTGGTCACATAA
-212 3.9 TATTGAAATCGCACTCATATAT