Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Pantoea ananatis LMG 20103

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pantoea ananatis LMG 20103
Orthologous TF(s) PANA_2154
Regulated genes 3
Built upon 159 sites [see more]
Predicted regulatory interactions in Pantoea ananatis LMG 20103
Locus tag Position Score Sequence
Position: -127
Score: 6.1
Sequence: AAATAAAACATTGTTTCAATT
Locus tag: PANA_0582
PANA_0582 -127 6.1 AAATAAAACATTGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -95
Score: 5
Sequence: AAATGAACTGCCGTTTTAAAA
Locus tag: PANA_2190
PANA_2190 -95 5 AAATGAACTGCCGTTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: eda
Ortholog function: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Escherichia coli str. K-12 substr. MG1655 b1850 -359 4.5 TATTGGACCGGTGTTTCAAAA
Salmonella typhimurium LT2 STM1884 -360 4.5 TATTGGACCGCCGTTTCAAAA
Citrobacter koseri ATCC BAA-895 CKO_01116 -360 4.5 TATTGGACCGTTGTTTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02365 -361 4.5 TATTGGACCGCCGTTTCAAAA
Enterobacter sp. 638 Ent638_2419 -362 4.5 TATTGGACCGCTGTTTCAAAA
Position: -21
Score: 5.6
Sequence: AAATGAAACGCGATTTTATTA
Locus tag: PANA_3520
PANA_3520 -21 5.6 AAATGAAACGCGATTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
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