Propagation of KdgR regulog to Klebsiella pneumoniae subsp. pneumoniae MGH 78578
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 |
| Orthologous TF(s) | KPN_02343 |
| Regulated genes | 17 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -104
Score: 5.8 Sequence: AATCAAAACATTGTTTCATTT
Locus tag: KPN_01240
|
||||
| KPN_01240 | -104 | 5.8 | AATCAAAACATTGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduD2 | ||||
| Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01753 | -99 | 5.9 | TTATAAAACACTGTTTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01240 | -104 | 5.8 | AATCAAAACATTGTTTCATTT |
| Enterobacter sp. 638 | Ent638_1716 | -94 | 5.6 | TTTTAAAACATCATTTCATTT |
|
Position: -285
Score: 5 Sequence: ATTTGAAACGAGGTTTTTATT
Locus tag: KPN_02133
|
||||
| KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykF | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
| Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
| Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
| Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
|
Position: -254
Score: 5.1 Sequence: AATTGAAACGCTATTTTTGTT
Locus tag: KPN_02160
|
||||
| KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsA | ||||
| Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
| Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
| Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
| Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
|
Position: -97
Score: 5.1 Sequence: AACAAAAATAGCGTTTCAATT
Locus tag: KPN_02161
|
||||
| KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsR | ||||
| Ortholog function: PEP synthetase regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
| Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
| Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
| Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
|
Position: -161
Score: 5 Sequence: AAATGAAACGGTTTTTTGAAT
Locus tag: KPN_02343
|
||||
| KPN_02343 | -161 | 5 | AAATGAAACGGTTTTTTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgR | ||||
| Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02343 | -161 | 5 | AAATGAAACGGTTTTTTGAAT |
|
Position: -200
Score: 4.9 Sequence: AAGAGAAATGCTGTTTTATAA
Locus tag: KPN_02390
|
||||
| KPN_02390 | -200 | 4.9 | AAGAGAAATGCTGTTTTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiT | ||||
| Ortholog function: Rhamnogalacturonide transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01081 | -190 | 5.4 | AATAGAAACGCTGTTTTATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02390 | -200 | 4.9 | AAGAGAAATGCTGTTTTATAA |
| Enterobacter sp. 638 | Ent638_2444 | -189 | 5.6 | AAAAGAAACGCTGTTTTATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3560 | -167 | 4.7 | AGTTAAAATGCCTTTTTATAA |
|
Position: -46
Score: 5.2 Sequence: TATAAAAACAGTGTTTCAAAA
Locus tag: KPN_02398
|
||||
| KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: togT | ||||
| Ortholog function: Oligogalacturonide transporter | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA |
| Yersinia pestis KIM | y2961 | -47 | 4.5 | AAAGAAAACAGTTATTCATTA |
| -25 | 6.1 | AAATGAAACATTGTTTTAATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0817 | -60 | 4.5 | TAAAGAAATGATAGTTCAATC |
| -38 | 5.5 | AACTGAAATATTGTTTCATAT | ||
|
Position: -40
Score: 5.1 Sequence: ATTTGAAATGTTGTTTCAACA
Locus tag: KPN_02447
|
||||
| KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeeO | ||||
| Ortholog function: predicted multidrug efflux system, MATE family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1985 | -7 | 4.9 | ATTTGAAATGTGGTTTCACTT |
| Salmonella typhimurium LT2 | STM2013 | -7 | 5 | TATTGAAATGTGGTTTCAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_00837 | -7 | 4.9 | ATTTGAAATGAGGTTTCAACT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA |
| Enterobacter sp. 638 | Ent638_2574 | -74 | 5 | ATTTGAAATGTAGTTTCAACT |
| Yersinia pestis KIM | y2593 | -158 | 4.8 | TCATGAAACTATGTTCCATTT |
| Serratia proteamaculans 568 | Spro_3106 | -39 | 5.2 | ATTTGAAATGTTGTTTCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2762 | -140 | 5.1 | AATAGAAACGTCATTTTAAAA |
|
Position: -102
Score: 5 Sequence: TTTTGAAACGCCTTTTTAATT
Locus tag: KPN_02601
|
||||
| KPN_02601 | -102 | 5 | TTTTGAAACGCCTTTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: setC | ||||
| Ortholog function: lactose/glucose efflux system | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02601 | -102 | 5 | TTTTGAAACGCCTTTTTAATT |
| Enterobacter sp. 638 | Ent638_2764 | -109 | 4.9 | TTTTGAAATGCTATTTTGATT |
|
Position: -39
Score: 5.8 Sequence: AAATGAAACAATGTTTCACTT
Locus tag: KPN_03255
|
||||
| KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgF | ||||
| Ortholog function: Pectin degradation protein KdgF | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
| Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
| Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
|
Position: -288
Score: 5 Sequence: TTTTGAAACATCGTTTCGACT
Position: -211
Score: 5.6 Sequence: AATTAAAACGGTGTTTTATAA
Locus tag: KPN_03256
|
||||
| KPN_03256 | -288 | 5 | TTTTGAAACATCGTTTCGACT | |
| -211 | 5.6 | AATTAAAACGGTGTTTTATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: togM | ||||
| Ortholog function: oligogalacturonide ABC transporter, inner membrane permease | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03256 | -288 | 5 | TTTTGAAACATCGTTTCGACT |
| -211 | 5.6 | AATTAAAACGGTGTTTTATAA | ||
| Enterobacter sp. 638 | Ent638_3289 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
| Yersinia pestis KIM | y1884 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
| -76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2403 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
| -61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
|
Position: -207
Score: 5.8 Sequence: AAATGAAACATCGTTTTAAAT
Locus tag: KPN_03265
|
||||
| KPN_03265 | -207 | 5.8 | AAATGAAACATCGTTTTAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduD | ||||
| Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2842 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3017 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04219 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03265 | -207 | 5.8 | AAATGAAACATCGTTTTAAAT |
| -139 | 5.2 | AAACGGAACTCTGTTTTATTT | ||
| Enterobacter sp. 638 | Ent638_3295 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
|
Position: -299
Score: 5.8 Sequence: ATTTAAAACGATGTTTCATTT
Position: -103
Score: 5.6 Sequence: TAATGAAACAATGTTTTGATA
Locus tag: KPN_03266
|
||||
| KPN_03266 | -299 | 5.8 | ATTTAAAACGATGTTTCATTT | |
| -103 | 5.6 | TAATGAAACAATGTTTTGATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ogl | ||||
| Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03266 | -299 | 5.8 | ATTTAAAACGATGTTTCATTT |
| -103 | 5.6 | TAATGAAACAATGTTTTGATA | ||
| Enterobacter sp. 638 | Ent638_3297 | -105 | 5 | CATTGAAACGTCGTTTTGATA |
|
Position: -58
Score: 5.8 Sequence: AAATAAAATGATGTTTCATAA
Position: -37
Score: 5.6 Sequence: AAACGAAATGTCATTTTATTT
Locus tag: KPN_03267
|
||||
| KPN_03267 | -58 | 5.8 | AAATAAAATGATGTTTCATAA | |
| -37 | 5.6 | AAACGAAATGTCATTTTATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgM | ||||
| Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03267 | -58 | 5.8 | AAATAAAATGATGTTTCATAA |
| -37 | 5.6 | AAACGAAATGTCATTTTATTT | ||
| Enterobacter sp. 638 | Ent638_3298 | -54 | 4.9 | AAATAAAATGCAGTTCCATAA |
| -33 | 5.4 | AAACGAAATGACATTTTAATT | ||
|
Position: -87
Score: 5.3 Sequence: TAATGGAACGATGTTTTAATA
Locus tag: KPN_03876
|
||||
| KPN_03876 | -87 | 5.3 | TAATGGAACGATGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03876 | -87 | 5.3 | TAATGGAACGATGTTTTAATA |
|
Position: -113
Score: 4.9 Sequence: AACAGAAATGGCGTTTCATCA
Locus tag: KPN_04460
|
||||
| KPN_04460 | -113 | 4.9 | AACAGAAATGGCGTTTCATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjcB | ||||
| Ortholog function: putative inner membrane protein | ||||
| Salmonella typhimurium LT2 | STM4263 | -120 | 5.4 | AATAGAAACAATGTTTCATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_03830 | -121 | 5.1 | AACAGAAACGTTGTTTCATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04460 | -113 | 4.9 | AACAGAAATGGCGTTTCATCA |
|
Position: -33
Score: 5.8 Sequence: AAATGAAATGCTGTTTTATAT
Locus tag: KPN_04658
|
||||
| KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |