Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NsrR regulog to Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29

Reference regulog properties
Source regulog: NsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Orthologous TF(s) Sentente_010100025061
Regulated genes 10
Built upon 73 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Locus tag Position Score Sequence
Position: -35
Score: 5.7
Sequence: CATGTATATTAAATATAAC
Locus tag: Sentente_010100007809
Sentente_010100007809 -35 5.7 CATGTATATTAAATATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Salmonella typhimurium LT2 STM0937 -35 5.7 CATGTATATTAAATATAAC
Position: -47
Score: 6.4
Sequence: GATGCATTTAAAATACAAC
Locus tag: Sentente_010100012807
Sentente_010100012807 -47 6.4 GATGCATTTAAAATACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Escherichia coli str. K-12 substr. MG1655 b4209 -47 6.4 GATGCATTTAAAATACATC
Salmonella typhimurium LT2 STM4399 -47 6.4 GATGCATTTAAAATACAAC
Citrobacter koseri ATCC BAA-895 CKO_03623 -47 6.2 GATGTATTTAAAATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04602 -47 6.4 GATGCATTTAAAATACATC
Enterobacter sp. 638 Ent638_0379 -48 5.8 GATGCATTTAATATGCACC
Yersinia pestis KIM y0652 -77 5.1 CATGCATTTATTATGCATG
-53 4.8 GGTGTATAATAAATACATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -50 6 GATGCATTTAAAATGCAAT
Edwardsiella tarda EIB202 ETAE_0372 -47 5.7 ATTGCATTTAAAATACACC
Position: -167
Score: 4.4
Sequence: GTGGTATTTTACATACACT
Locus tag: Sentente_010100017476
Sentente_010100017476 -167 4.4 GTGGTATTTTACATACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -165 4.3 GTGGTATTTTACATGCACT
-154 3.7 CATGCACTTACAATTGATT
Salmonella typhimurium LT2 STM4277 -167 4.4 GTGGTATTTTACATACACT
Citrobacter koseri ATCC BAA-895 CKO_03814 -170 4.3 GTGGTATTTTACATGCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -125 4.2 ACAATATTTCAAATGCATC
Position: -89
Score: 3.9
Sequence: ATGGTATTTAAAATACTGT
Locus tag: Sentente_010100018086
Sentente_010100018086 -89 3.9 ATGGTATTTAAAATACTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: uncharacterized protein/domain, possibly involved in tellurite resistance
Salmonella typhimurium LT2 STM1271 -89 3.9 ATGGTATTTAAAATACTGT
Position: -48
Score: 5.5
Sequence: GGTGTATATTAAATACATC
Locus tag: Sentente_010100026728
Sentente_010100026728 -48 5.5 GGTGTATATTAAATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehB2
Ortholog function: tellurite resistance-like protein TehB2
Salmonella typhimurium LT2 STM1808 -48 5.5 GGTGTATATTAAATACATC
Citrobacter koseri ATCC BAA-895 CKO_01186 -48 5.9 GATGTATATTAAATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02314 -43 5.6 GGTGCATATTAAATACATC
Position: -35
Score: 5.4
Sequence: AATGCATTTCAAATATACT
Locus tag: SeSPB_A1692
SeSPB_A1692 -35 5.4 AATGCATTTCAAATATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehA
Ortholog function: Tellurite resistance protein TehA
Escherichia coli str. K-12 substr. MG1655 b1429 -47 5.4 AATGCATTTCAAATATACT
Salmonella typhimurium LT2 STM1609 -35 5.4 AATGCATTTCAAATATACT
Citrobacter koseri ATCC BAA-895 CKO_01466 -35 5.6 AATGCATTTAAAATATACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01941 -47 5 GGTTCCTTTAAAATGCAAC
Enterobacter sp. 638 Ent638_1974 -35 5.2 CTAGCATTTCAAATATAAT
Position: -40
Score: 4.4
Sequence: GGTGTAAAATAAATACACC
Locus tag: SeSPB_A3033
SeSPB_A3033 -40 4.4 GGTGTAAAATAAATACACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: hypothetical protein involved in nitrosative stress
Escherichia coli str. K-12 substr. MG1655 b2732 -38 5.1 GATGTAATATAAATACATC
Salmonella typhimurium LT2 STM2860 -40 4.4 GGTGTAAAATAAATACACC
Enterobacter sp. 638 Ent638_3209 -39 4.1 GATGTATTATTTATGCACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2415 -39 5.6 ATTGTATTTAAAATGCATC
Proteus mirabilis HI4320 PMI1959 -215 3.7 ATTGTTTGTTAAATAAAAT
-38 5.8 AATGCATTTTAAATGCAAC
Position: -208
Score: 3.7
Sequence: GATGTAAAAAAATAGCAAT
Position: -135
Score: 3.7
Sequence: AAGATATTTTGTATACAAC
Locus tag: SeSPB_A1879
SeSPB_A1879 -208 3.7 GATGTAAAAAAATAGCAAT
-135 3.7 AAGATATTTTGTATACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: grxD
Ortholog function: Probable monothiol glutaredoxin ydhD
Escherichia coli str. K-12 substr. MG1655 b1654 -135 4.4 CGAATATTTGAAATGCAAC
Salmonella typhimurium LT2 STM1433 -208 3.7 GATGTAAAAAAATAGCAAT
-135 3.7 AAGATATTTTGTATACAAC
Citrobacter koseri ATCC BAA-895 CKO_01665 -134 4.3 GAGATATTTAGAATGCAAC
Position: -218
Score: 4.3
Sequence: GTTGTATACAAAATATCTT
Locus tag: SeSPB_A1880
SeSPB_A1880 -218 4.3 GTTGTATACAAAATATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhO
Ortholog function: putative exported protein
Escherichia coli str. K-12 substr. MG1655 b1655 -217 4.8 GTTGCATTTCAAATATTCG
Salmonella typhimurium LT2 STM1432 -185 4.3 GTTGTATACAAAATATCTT
Enterobacter sp. 638 Ent638_1792 -223 3.9 GTTGCATTCGCAATATAGT
Position: -248
Score: 3.8
Sequence: TAGTCATTTTCTATACATC
Locus tag: SeSPB_A1940
SeSPB_A1940 -248 3.8 TAGTCATTTTCTATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Iron binding protein SufA for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -248 4.1 TAGTCATTTTCAATACAAC
Salmonella typhimurium LT2 STM1369 -248 3.8 TAGTCATTTTCTATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -116 4 TATGCTTATAAAAAGCACT
Enterobacter sp. 638 Ent638_1760 -249 3.8 TAGGCATTATCTATACATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -191 3.9 AATAAATTAAAGATATACC
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