Propagation of Fnr regulog to Yersinia mollaretii ATCC 43969
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Yersinia mollaretii ATCC 43969 |
| Orthologous TF(s) | YmolA_01000461 |
| Regulated genes | 71 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -149
Score: 5.3 Sequence: TTGATATATATCAA
Locus tag: YmolA_01000047
|
||||
| YmolA_01000047 | -149 | 5.3 | TTGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -53
Score: 4 Sequence: TTGATCATGATCAC
Locus tag: YmolA_01000055
|
||||
| YmolA_01000055 | -53 | 4 | TTGATCATGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -3
Score: 4.2 Sequence: TTGATGGAAAGCAA
Locus tag: YmolA_01000065
|
||||
| YmolA_01000065 | -3 | 4.2 | TTGATGGAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -307
Score: 3.6 Sequence: ATTATTTACATTAA
Locus tag: YmolA_01000184
|
||||
| YmolA_01000184 | -307 | 3.6 | ATTATTTACATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03624 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3677 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4344 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0128 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -87
Score: 3.7 Sequence: TTGATGGAAATAAG
Position: 7
Score: 4.1 Sequence: TTGATCTCTGTCAT
Locus tag: YmolA_01000185
|
||||
| YmolA_01000185 | -87 | 3.7 | TTGATGGAAATAAG | |
| 7 | 4.1 | TTGATCTCTGTCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcC | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Enterobacter sp. 638 | Ent638_3655 | -65 | 3.7 | TTTATTCAAATGAA |
| -32 | 4 | TTGATCCAGGTCAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b3211 | -75 | 4 | TTGATCCAGGTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03623 | -75 | 4 | TTGATCCAGGTCAT |
| Salmonella typhimurium LT2 | STM3329 | -75 | 4 | TTGATCCAGGTCAT |
| Serratia proteamaculans 568 | Spro_4343 | -74 | 4.2 | TTGATCTCTGTCAT |
| Yersinia pestis KIM | y0127 | -133 | 4.2 | TTGATCTCTGTCAT |
|
Position: -227
Score: 3.9 Sequence: TTGAGTGATATCAC
Locus tag: YmolA_01000269
|
||||
| YmolA_01000269 | -227 | 3.9 | TTGAGTGATATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Serratia proteamaculans 568 | Spro_4321 | -227 | 3.9 | TTGAGTGATATCAC |
| Yersinia pestis KIM | y3600 | -225 | 3.8 | TTGAGTGACATCAC |
|
Position: -239
Score: 5.5 Sequence: TTGATTTAAATCAA
Position: -186
Score: 4.7 Sequence: ATGTTTTATATCAA
Locus tag: YmolA_01000282
|
||||
| YmolA_01000282 | -239 | 5.5 | TTGATTTAAATCAA | |
| -186 | 4.7 | ATGTTTTATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -180
Score: 4.6 Sequence: TTGATATAAAACAT
Position: -127
Score: 5.5 Sequence: TTGATTTAAATCAA
Locus tag: YmolA_01000283
|
||||
| YmolA_01000283 | -180 | 4.6 | TTGATATAAAACAT | |
| -127 | 5.5 | TTGATTTAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Edwardsiella tarda EIB202 | ETAE_2732 | -27 | 4.3 | TTGCTCTATCTCAA |
| Proteus mirabilis HI4320 | PMI1898 | -180 | 5.2 | TTGATTTAAAACAA |
| -127 | 5.1 | TTGATATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_3682 | -189 | 4.2 | TTGACATAAAACAT |
| -136 | 4.9 | TTGACTTTAATCAA | ||
| Yersinia pestis KIM | y1282 | -180 | 4.6 | TTGATATAAAACAT |
| -127 | 5.1 | TTGATTTGAATCAA | ||
|
Position: -32
Score: 4.4 Sequence: TTGACGCATATCAA
Locus tag: YmolA_01000461
|
||||
| YmolA_01000461 | -32 | 4.4 | TTGACGCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -79
Score: 4.5 Sequence: ATGATCCATATCAA
Locus tag: YmolA_01000632
|
||||
| YmolA_01000632 | -79 | 4.5 | ATGATCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -95
Score: 3.6 Sequence: ATGATGCACAACAT
Position: -72
Score: 3.5 Sequence: ATTATTTTTATAAA
Position: -66
Score: 3.3 Sequence: TTTATAAAAATAAT
Locus tag: YmolA_01000732
|
||||
| YmolA_01000732 | -95 | 3.6 | ATGATGCACAACAT | |
| -72 | 3.5 | ATTATTTTTATAAA | ||
| -66 | 3.3 | TTTATAAAAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -232 | 4.7 | TTGTTATATAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -397 | 3.9 | TTGATCCTGATAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -272 | 4 | ATGATGAATGACAA |
| Proteus mirabilis HI4320 | PMI3008 | -176 | 3.6 | TTTAGTGAGGTCAA |
| Salmonella typhimurium LT2 | STM1299 | -51 | 3.4 | CTGATAAAACGCAA |
| Yersinia pestis KIM | y3858 | -231 | 3.6 | TTGAGTAACGTTAA |
|
Position: 0
Score: 4.2 Sequence: ATGATTAAAATAAA
Locus tag: YmolA_01000793
|
||||
| YmolA_01000793 | 0 | 4.2 | ATGATTAAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00239 | 0 | 4.2 | ATGATTAAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1196 | -205 | 4.1 | TTGAACTAAATCAC |
| Proteus mirabilis HI4320 | PMI0352 | -205 | 4.2 | TTGAGCTAAATCAC |
| Serratia proteamaculans 568 | Spro_0953 | 0 | 4.3 | ATGATTAAAATCAG |
| Yersinia pestis KIM | y0951 | 18 | 4.2 | ATGATTAAAATAAA |
|
Position: -249
Score: 3.5 Sequence: TTGTTTTTCCTTAA
Position: -195
Score: 3.6 Sequence: TTGCTATTAGTAAA
Locus tag: YmolA_01000855
|
||||
| YmolA_01000855 | -249 | 3.5 | TTGTTTTTCCTTAA | |
| -195 | 3.6 | TTGCTATTAGTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3875 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0108 | 9 | 3.6 | ATGAAATACATAAA |
| Serratia proteamaculans 568 | Spro_1090 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1021 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -42
Score: 3.7 Sequence: ATGATCACCCTCAA
Locus tag: YmolA_01000964
|
||||
| YmolA_01000964 | -42 | 3.7 | ATGATCACCCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoC | ||||
| Ortholog function: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04832 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3823 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3410 | -203 | 4.4 | TTGAGCCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0207 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2922 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3507 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4630 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3910 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -346
Score: 4 Sequence: CTGATTTAACTCAT
Locus tag: YmolA_01000966
|
||||
| YmolA_01000966 | -346 | 4 | CTGATTTAACTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -71
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: YmolA_01000994
|
||||
| YmolA_01000994 | -71 | 5.4 | TTGATTTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -72 | 5.4 | TTGATTTACATCAA |
| Enterobacter sp. 638 | Ent638_3793 | -72 | 5 | TTGATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -71 | 5.3 | TTGATATACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -72 | 5.4 | TTGATTTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03752 | -72 | 5 | TTGATTTGCATCAA |
| Proteus mirabilis HI4320 | PMI1479 | -72 | 5.1 | TTGATATTCATCAA |
| Salmonella typhimurium LT2 | STM3474 | -72 | 5.4 | TTGATTTACATCAA |
| Serratia proteamaculans 568 | Spro_4595 | -72 | 5 | TTGATTTGCATCAA |
| Yersinia pestis KIM | y3945 | -71 | 5.4 | TTGATTTACATCAA |
|
Position: -210
Score: 3.7 Sequence: TTTATGCATATCAG
Locus tag: YmolA_01001334
|
||||
| YmolA_01001334 | -210 | 3.7 | TTTATGCATATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -175
Score: 4.1 Sequence: TTGATAGATGTCAT
Locus tag: YmolA_01001338
|
||||
| YmolA_01001338 | -175 | 4.1 | TTGATAGATGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuC | ||||
| Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02537 | -106 | 4.7 | TTGATTTTAATCAG |
| Edwardsiella tarda EIB202 | ETAE_1192 | -147 | 4.1 | TTGACCAATATCAG |
| Enterobacter sp. 638 | Ent638_1152 | -102 | 4.4 | TTGATTTTAGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b0621 | -103 | 4.7 | TTGATTTTAATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00654 | -104 | 4.5 | TTGATTTGCATCAG |
| Proteus mirabilis HI4320 | PMI0652 | -127 | 4.5 | TTGATATATGTCAT |
| Salmonella typhimurium LT2 | STM0627 | -138 | 3.6 | TTCATCTTTAGCAA |
| -101 | 4.1 | GTGATTTTAATCAG | ||
| Serratia proteamaculans 568 | Spro_1579 | -107 | 4 | TTGACGGATATCAT |
|
Position: -148
Score: 4.4 Sequence: ATGATTTTGGTCAA
Locus tag: YmolA_01001651
|
||||
| YmolA_01001651 | -148 | 4.4 | ATGATTTTGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -298
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: YmolA_01001832
|
||||
| YmolA_01001832 | -298 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -193
Score: 4.4 Sequence: TTGCTCTACGTCAA
Locus tag: YmolA_01001899
|
||||
| YmolA_01001899 | -193 | 4.4 | TTGCTCTACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: 10
Score: 3.8 Sequence: TTGAGAAGCGTCAA
Locus tag: YmolA_01001938
|
||||
| YmolA_01001938 | 10 | 3.8 | TTGAGAAGCGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpF | ||||
| Ortholog function: ATP synthase B chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00076 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4128 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3478 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4516 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3736 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04141 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0044 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3060 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3869 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -249
Score: 3.6 Sequence: ATGATAGAACTCAT
Locus tag: YmolA_01001981
|
||||
| YmolA_01001981 | -249 | 3.6 | ATGATAGAACTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -277
Score: 3.7 Sequence: TTATTCTTTGTCAA
Locus tag: YmolA_01002195
|
||||
| YmolA_01002195 | -277 | 3.7 | TTATTCTTTGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -285
Score: 4 Sequence: TTTATATAGATAAA
Locus tag: YmolA_01002377
|
||||
| YmolA_01002377 | -285 | 4 | TTTATATAGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnA | ||||
| Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Enterobacter sp. 638 | Ent638_2192 | -135 | 4.6 | TTGTTTTATCTCAA |
| Erwinia amylovora ATCC 49946 | EAM_1866 | 37 | 4.4 | TGGATGTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1941 | -98 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1276 | -133 | 3.7 | TTGCTTTGCCACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2432 | 7 | 4.6 | TTGATTTAAAAAAA |
| Salmonella typhimurium LT2 | STM1712 | -301 | 3.9 | TTGATTAAACACAG |
| Yersinia pestis KIM | y2063 | -37 | 3.9 | TTGAATTAAAACAC |
|
Position: 8
Score: 3.7 Sequence: ATTATATTTAACAA
Locus tag: YmolA_01002541
|
||||
| YmolA_01002541 | 8 | 3.7 | ATTATATTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoL | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00518 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2375 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2278 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02668 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3079 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2318 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3298 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1640 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -170
Score: 3.5 Sequence: ACGATAAATATCAG
Locus tag: YmolA_01002579
|
||||
| YmolA_01002579 | -170 | 3.5 | ACGATAAATATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -224
Score: 5.1 Sequence: TTGATCTAAAACAA
Locus tag: YmolA_01002719
|
||||
| YmolA_01002719 | -224 | 5.1 | TTGATCTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -143
Score: 4.5 Sequence: CTGATTCAGATCAA
Locus tag: YmolA_01002857
|
||||
| YmolA_01002857 | -143 | 4.5 | CTGATTCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -98
Score: 4.4 Sequence: TTGATCTGAATCAG
Locus tag: YmolA_01002858
|
||||
| YmolA_01002858 | -98 | 4.4 | TTGATCTGAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -297
Score: 3.4 Sequence: TTCTCATTAAACAA
Position: -282
Score: 3.4 Sequence: TCGTTATATAAAAA
Position: -210
Score: 4 Sequence: TTGATCCTGCTCAA
Position: -119
Score: 3.3 Sequence: ATCTCTTTCATCAA
Position: -113
Score: 3.6 Sequence: TTCATCAAGATAAA
Position: -94
Score: 3.2 Sequence: ATAATTATCATCAT
Locus tag: YmolA_01002884
|
||||
| YmolA_01002884 | -297 | 3.4 | TTCTCATTAAACAA | |
| -282 | 3.4 | TCGTTATATAAAAA | ||
| -210 | 4 | TTGATCCTGCTCAA | ||
| -119 | 3.3 | ATCTCTTTCATCAA | ||
| -113 | 3.6 | TTCATCAAGATAAA | ||
| -94 | 3.2 | ATAATTATCATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: 36
Score: 3.4 Sequence: TTTTTGTCCATCAT
Locus tag: YmolA_01002887
|
||||
| YmolA_01002887 | 36 | 3.4 | TTTTTGTCCATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napB | ||||
| Ortholog function: Nitrate reductase cytochrome c550-type subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00572 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2203 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2256 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -302
Score: 3.6 Sequence: TCGTTGTATATAAA
Locus tag: YmolA_01002894
|
||||
| YmolA_01002894 | -302 | 3.6 | TCGTTGTATATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: -250
Score: 3.7 Sequence: TTTATATACAACGA
Position: -182
Score: 3.7 Sequence: CTGTTTAAAATCAC
Locus tag: YmolA_01002895
|
||||
| YmolA_01002895 | -250 | 3.7 | TTTATATACAACGA | |
| -182 | 3.7 | CTGTTTAAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -33
Score: 3.8 Sequence: GTTATCAAAATCAA
Locus tag: YmolA_01002963
|
||||
| YmolA_01002963 | -33 | 3.8 | GTTATCAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hypE | ||||
| Ortholog function: [NiFe] hydrogenase metallocenter assembly protein HypE | ||||
| Salmonella typhimurium LT2 | STM2858 | -88 | 3.7 | TTGATGAAACTGAA |
|
Position: -281
Score: 4.2 Sequence: GTGATTTAAATCAC
Locus tag: YmolA_01002981
|
||||
| YmolA_01002981 | -281 | 4.2 | GTGATTTAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -158
Score: 4.4 Sequence: ATGATCCAGATCAA
Locus tag: YmolA_01003000
|
||||
| YmolA_01003000 | -158 | 4.4 | ATGATCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -147
Score: 3.4 Sequence: TTGATAAGCAGCAT
Locus tag: YmolA_01003041
|
||||
| YmolA_01003041 | -147 | 3.4 | TTGATAAGCAGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_0311 | 19 | 3.5 | TTGAAGAAGATCTA |
| Enterobacter sp. 638 | Ent638_0326 | -184 | 3.6 | TTAATAATTATCAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | 0 | 3.5 | ATGTTAAACAACAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -362 | 4.2 | TTGATTTGGATGAA |
| -198 | 3.8 | ATCACATATATCAA | ||
| Proteus mirabilis HI4320 | PMI2546 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -130
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: YmolA_01003119
|
||||
| YmolA_01003119 | -130 | 4.1 | ATGATGTTAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -294
Score: 4.3 Sequence: TTGATAAGGAACAA
Position: -240
Score: 4.3 Sequence: ATGATTGTGATCAA
Locus tag: YmolA_01003178
|
||||
| YmolA_01003178 | -294 | 4.3 | TTGATAAGGAACAA | |
| -240 | 4.3 | ATGATTGTGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -291
Score: 3.6 Sequence: ATGTTCTATAACGA
Position: -145
Score: 4.3 Sequence: TTGATCACAATCAT
Position: -91
Score: 4.3 Sequence: TTGTTCCTTATCAA
Locus tag: YmolA_01003180
|
||||
| YmolA_01003180 | -291 | 3.6 | ATGTTCTATAACGA | |
| -145 | 4.3 | TTGATCACAATCAT | ||
| -91 | 4.3 | TTGTTCCTTATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: 9
Score: 3.6 Sequence: TTGCCACAGAACAA
Locus tag: YmolA_01003182
|
||||
| YmolA_01003182 | 9 | 3.6 | TTGCCACAGAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpC | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00534 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3113 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2807 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4163 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2243 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02649 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3594 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2286 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0202 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0406 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -195
Score: 4 Sequence: TTGATATTAGCCAA
Position: -124
Score: 3.3 Sequence: TTGCTTAAAACCAG
Locus tag: YmolA_01003298
|
||||
| YmolA_01003298 | -195 | 4 | TTGATATTAGCCAA | |
| -124 | 3.3 | TTGCTTAAAACCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -165
Score: 3.9 Sequence: TTGATTTTCATAAT
Locus tag: YmolA_01003527
|
||||
| YmolA_01003527 | -165 | 3.9 | TTGATTTTCATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -316
Score: 4.5 Sequence: TTGTGCTAAATCAA
Position: -265
Score: 4.9 Sequence: TTGTTCTAGATCAA
Locus tag: YmolA_01003637
|
||||
| YmolA_01003637 | -316 | 4.5 | TTGTGCTAAATCAA | |
| -265 | 4.9 | TTGTTCTAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Proteus mirabilis HI4320 | PMI0573 | -312 | 4.5 | TTGATGTGGGTCAA |
| Yersinia pestis KIM | y3063 | -314 | 5.1 | TTGTTCTAAATCAA |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
|
Position: -149
Score: 4.3 Sequence: ATGACTTGAATCAA
Locus tag: YmolA_01003682
|
||||
| YmolA_01003682 | -149 | 4.3 | ATGACTTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |