Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Yersinia frederiksenii ATCC 33641

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Yersinia frederiksenii ATCC 33641
Orthologous TF(s) YfreA_01001004
Regulated genes 68
Built upon 685 sites [see more]
Predicted regulatory interactions in Yersinia frederiksenii ATCC 33641
Locus tag Position Score Sequence
Position: 0
Score: 3.6
Sequence: ATGGTTGAAAACAA
Locus tag: YfreA_01000017
YfreA_01000017 0 3.6 ATGGTTGAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfI
Ortholog function: Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
Citrobacter koseri ATCC BAA-895 CKO_01585 -32 4.3
Enterobacter sp. 638 Ent638_1925 -107 3.7 TTGATGGGGATTAA
Escherichia coli str. K-12 substr. MG1655 b1591 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM1495 -116 3.7 TTGACATGGATTAA
Serratia proteamaculans 568 Spro_1690 -164 4.2 TTGATAGCAGACAA
-40 4.2 ATGACGTTTATCAA
Position: -195
Score: 3.8
Sequence: TTGATGCTGAGCAA
Locus tag: YfreA_01000020
YfreA_01000020 -195 3.8 TTGATGCTGAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -239
Score: 4.7
Sequence: TTGATAAAGGTCAA
Locus tag: YfreA_01000073
YfreA_01000073 -239 4.7 TTGATAAAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -148
Score: 4.3
Sequence: ATGATTTCGGTCAA
Locus tag: YfreA_01000172
YfreA_01000172 -148 4.3 ATGATTTCGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -298
Score: 5
Sequence: TTGATATATGTCAA
Locus tag: YfreA_01000264
YfreA_01000264 -298 5 TTGATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -242
Score: 3.4
Sequence: TAGATGAAAAGCAA
Position: -169
Score: 3.3
Sequence: TTTACTCAGATAAA
Locus tag: YfreA_01000531
YfreA_01000531 -242 3.4 TAGATGAAAAGCAA
-169 3.3 TTTACTCAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -192
Score: 4.1
Sequence: TTGATAGATGTCAT
Locus tag: YfreA_01000542
YfreA_01000542 -192 4.1 TTGATAGATGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: 8
Score: 3.7
Sequence: ATTATATTTAACAA
Locus tag: YfreA_01000626
YfreA_01000626 8 3.7 ATTATATTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoL
Ortholog function: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00518 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2375 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2278 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02668 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3079 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2318 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3298 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1640 -465 3.6 TTTTATTAAAACAA
Position: -161
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: YfreA_01000645
YfreA_01000645 -161 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -45
Score: 3.5
Sequence: TTGGTTTTCATGAA
Locus tag: YfreA_01000716
YfreA_01000716 -45 3.5 TTGGTTTTCATGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Citrobacter koseri ATCC BAA-895 CKO_00574 -35 3.4 TTGCCCGACATCAG
Edwardsiella tarda EIB202 ETAE_2461 -396 4.3 TTGCTATATATCAG
5 3.5 GCGATTAAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2201 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02081 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2254 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3819 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1567 -302 4 TGGATTTTTAACAA
Position: -32
Score: 4.4
Sequence: TTGACGCATATCAA
Locus tag: YfreA_01001004
YfreA_01001004 -32 4.4 TTGACGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -71
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: YfreA_01001107
YfreA_01001107 -71 5.4 TTGATTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4)
Citrobacter koseri ATCC BAA-895 CKO_04789 -72 5.4 TTGATTTACATCAA
Enterobacter sp. 638 Ent638_3793 -72 5 TTGATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -71 5.3 TTGATATACATCAA
Escherichia coli str. K-12 substr. MG1655 b3365 -72 5.4 TTGATTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03752 -72 5 TTGATTTGCATCAA
Proteus mirabilis HI4320 PMI1479 -72 5.1 TTGATATTCATCAA
Salmonella typhimurium LT2 STM3474 -72 5.4 TTGATTTACATCAA
Serratia proteamaculans 568 Spro_4595 -72 5 TTGATTTGCATCAA
Yersinia pestis KIM y3945 -71 5.4 TTGATTTACATCAA
Position: -265
Score: 4
Sequence: CTGATTTAACTCAT
Position: -107
Score: 3.5
Sequence: ATTATTTAACTCAT
Locus tag: YfreA_01001134
YfreA_01001134 -265 4 CTGATTTAACTCAT
-107 3.5 ATTATTTAACTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: 35
Score: 3.6
Sequence: TTTATCGATATCAC
Locus tag: YfreA_01001135
YfreA_01001135 35 3.6 TTTATCGATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoB
Ortholog function: Ferrous iron transport protein B
Citrobacter koseri ATCC BAA-895 CKO_04831 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3822 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3409 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03779 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0208 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2921 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3506 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4629 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3911 -93 4 ATTATTTAAATCAT
Position: -114
Score: 4.5
Sequence: TTGATCTTGATCAT
Locus tag: YfreA_01001151
YfreA_01001151 -114 4.5 TTGATCTTGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Edwardsiella tarda EIB202 ETAE_3307 -153 4.8 TTCATTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4151 -38 4.2 TTTATTTAATTCAA
Yersinia pestis KIM y3886 -25 4.2 ATGCTATTAATCAA
Position: -116
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: YfreA_01001317
YfreA_01001317 -116 4.4 TTGCGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -79
Score: 4.5
Sequence: ATGATCCACATCAA
Locus tag: YfreA_01001340
YfreA_01001340 -79 4.5 ATGATCCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -287
Score: 3.5
Sequence: TTTATCTGAATGAA
Position: -239
Score: 3.4
Sequence: TTCTCATTAAACAA
Position: -224
Score: 3.4
Sequence: TCGTTATATAAAAA
Position: -222
Score: 3.2
Sequence: GTTATATAAAAAAA
Position: -152
Score: 4.5
Sequence: TTGATCTTGCTCAA
Position: -146
Score: 3.8
Sequence: TTGCTCAATATCAC
Position: -57
Score: 3.3
Sequence: TTTCTTTTACACAA
Locus tag: YfreA_01001489
YfreA_01001489 -287 3.5 TTTATCTGAATGAA
-239 3.4 TTCTCATTAAACAA
-224 3.4 TCGTTATATAAAAA
-222 3.2 GTTATATAAAAAAA
-152 4.5 TTGATCTTGCTCAA
-146 3.8 TTGCTCAATATCAC
-57 3.3 TTTCTTTTACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -98
Score: 4.4
Sequence: TTGATCTGAATCAG
Locus tag: YfreA_01001514
YfreA_01001514 -98 4.4 TTGATCTGAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -200
Score: 4.5
Sequence: CTGATTCAGATCAA
Locus tag: YfreA_01001515
YfreA_01001515 -200 4.5 CTGATTCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -179
Score: 4.6
Sequence: TTGATATAAAACAT
Position: -126
Score: 5.2
Sequence: TTGATTTAAGTCAA
Locus tag: YfreA_01001628
YfreA_01001628 -179 4.6 TTGATATAAAACAT
-126 5.2 TTGATTTAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -239
Score: 5.1
Sequence: TTGACTTAAATCAA
Position: -186
Score: 4.7
Sequence: ATGTTTTATATCAA
Locus tag: YfreA_01001629
YfreA_01001629 -239 5.1 TTGACTTAAATCAA
-186 4.7 ATGTTTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -322
Score: 3.7
Sequence: ATTATTTACATAAA
Position: -250
Score: 3.5
Sequence: TTGTTTTTCCTTAA
Position: -195
Score: 3.6
Sequence: TTGCTATTAGTAAA
Locus tag: YfreA_01001891
YfreA_01001891 -322 3.7 ATTATTTACATAAA
-250 3.5 TTGTTTTTCCTTAA
-195 3.6 TTGCTATTAGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Photorhabdus luminescens subsp. laumondii TTO1 plu3875 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0108 9 3.6 ATGAAATACATAAA
Serratia proteamaculans 568 Spro_1090 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1021 -223 3.5 TTGTTTTTCCTTAA
Position: 15
Score: 3.4
Sequence: CTGACTAACCACAA
Locus tag: YfreA_01001893
YfreA_01001893 15 3.4 CTGACTAACCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoC
Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02731 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0983 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0430 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00392 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3877 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0106 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0441 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1088 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1019 -223 3.5 TTGTTTTTCCTTAA
Position: 0
Score: 4.2
Sequence: ATGATTAAAATAAA
Locus tag: YfreA_01001969
YfreA_01001969 0 4.2 ATGATTAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -180
Score: 4.3
Sequence: TTGTCCTAAGTCAA
Locus tag: YfreA_01002205
YfreA_01002205 -180 4.3 TTGTCCTAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -117
Score: 4.2
Sequence: TTGCCTTCCATCAA
Locus tag: YfreA_01002282
YfreA_01002282 -117 4.2 TTGCCTTCCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -128
Score: 4.2
Sequence: TTGTTTAAAATCAC
Locus tag: YfreA_01002350
YfreA_01002350 -128 4.2 TTGTTTAAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -81
Score: 3.7
Sequence: GTGATTGATATAAA
Locus tag: YfreA_01002470
YfreA_01002470 -81 3.7 GTGATTGATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstC
Ortholog function: Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Citrobacter koseri ATCC BAA-895 CKO_00064 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3539 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4476 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3727 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0215 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2894 -46 4 TTGATAGATGTCGA
Position: -33
Score: 3.9
Sequence: TTGTTTTGTATGAA
Locus tag: YfreA_01002479
YfreA_01002479 -33 3.9 TTGTTTTGTATGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpF
Ortholog function: ATP synthase B chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895 CKO_00076 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4128 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3478 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4516 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3736 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04141 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0044 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3060 -130 4
Salmonella typhimurium LT2 STM3869 -122 4.2 TTGTTTGAAATCAC
Position: -27
Score: 3.7
Sequence: TTGAAATTGATAAA
Locus tag: YfreA_01002559
YfreA_01002559 -27 3.7 TTGAAATTGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Citrobacter koseri ATCC BAA-895 CKO_00538 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3117 -301 3.8 GTGATCAAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4167 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02645 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4120 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3590 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2282 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0198 -305 4.3 TTGATAAGGAACAA
Position: -319
Score: 4.3
Sequence: TTGATAAGGAACAA
Position: -265
Score: 4.3
Sequence: ATGATTGTGATCAA
Locus tag: YfreA_01002560
YfreA_01002560 -319 4.3 TTGATAAGGAACAA
-265 4.3 ATGATTGTGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -145
Score: 4.3
Sequence: TTGATCACAATCAT
Position: -91
Score: 4.3
Sequence: TTGTTCCTTATCAA
Locus tag: YfreA_01002561
YfreA_01002561 -145 4.3 TTGATCACAATCAT
-91 4.3 TTGTTCCTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -190
Score: 4.1
Sequence: TTGATCTCTGTCAT
Position: -93
Score: 3.7
Sequence: CTGACTTAAGTCAG
Locus tag: YfreA_01002747
YfreA_01002747 -190 4.1 TTGATCTCTGTCAT
-93 3.7 CTGACTTAAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -280
Score: 3.8
Sequence: TTCAAATAAAACAA
Locus tag: YfreA_01002909
YfreA_01002909 -280 3.8 TTCAAATAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -148
Score: 4.3
Sequence: ATGACTTGAATCAA
Locus tag: YfreA_01003223
YfreA_01003223 -148 4.3 ATGACTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -105
Score: 3.8
Sequence: TTGTTGAATAACAG
Position: -25
Score: 3.7
Sequence: GTGATTTTTAACAG
Locus tag: YfreA_01003355
YfreA_01003355 -105 3.8 TTGTTGAATAACAG
-25 3.7 GTGATTTTTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -186
Score: 3.6
Sequence: ATCATTTAAGTCAT
Position: -53
Score: 4
Sequence: TTGATCACGATCAC
Locus tag: YfreA_01003365
YfreA_01003365 -186 3.6 ATCATTTAAGTCAT
-53 4 TTGATCACGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -149
Score: 5.3
Sequence: TTGATATATATCAA
Locus tag: YfreA_01003373
YfreA_01003373 -149 5.3 TTGATATATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -165
Score: 3.9
Sequence: TTGATTTTCATAAT
Locus tag: YfreA_01003427
YfreA_01003427 -165 3.9 TTGATTTTCATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Citrobacter koseri ATCC BAA-895 CKO_03906 -162 4.2 TTTATTGTTATCAA
Enterobacter sp. 638 Ent638_0218 -111 4 TTGATTTTAGAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04395 -154 4.1 TTCATTGTTATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -61 4
Proteus mirabilis HI4320 PMI2764 -64 4.2
Position: -158
Score: 4.4
Sequence: ATGATCCAGATCAA
Locus tag: YfreA_01003539
YfreA_01003539 -158 4.4 ATGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -281
Score: 4.2
Sequence: GTGATTTAAATCAC
Locus tag: YfreA_01003559
YfreA_01003559 -281 4.2 GTGATTTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -236
Score: 5.1
Sequence: TTGATCTAAAACAA
Locus tag: YfreA_01003623
YfreA_01003623 -236 5.1 TTGATCTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Citrobacter koseri ATCC BAA-895 CKO_03814 -146 4.7 TTGATTAAAGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -135 4.8 TTGATCAAAAACAA
Escherichia coli str. K-12 substr. MG1655 b4070 -141 4.7 TTGATTAAAGACAA
Salmonella typhimurium LT2 STM4277 -143 4.7 TTGATTAAAGACAA
Position: -277
Score: 3.7
Sequence: TTATTCTTTGTCAA
Locus tag: YfreA_01003745
YfreA_01003745 -277 3.7 TTATTCTTTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -316
Score: 5.1
Sequence: TTGTTCTAAATCAA
Position: -265
Score: 4.5
Sequence: TTGTTCTGGATCAA
Locus tag: YfreA_01003754
YfreA_01003754 -316 5.1 TTGTTCTAAATCAA
-265 4.5 TTGTTCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Proteus mirabilis HI4320 PMI0573 -312 4.5 TTGATGTGGGTCAA
Yersinia pestis KIM y3063 -314 5.1 TTGTTCTAAATCAA
-263 4.4 TTGTCGTAGATCAA
Position: -203
Score: 3.8
Sequence: TTGAGTGACATCAC
Locus tag: YfreA_01004051
YfreA_01004051 -203 3.8 TTGAGTGACATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Serratia proteamaculans 568 Spro_4321 -227 3.9 TTGAGTGATATCAC
Yersinia pestis KIM y3600 -225 3.8 TTGAGTGACATCAC