Propagation of Fnr regulog to Shigella dysenteriae 1012
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Shigella dysenteriae 1012 |
| Orthologous TF(s) | Sdys1_01002257 |
| Regulated genes | 58 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -123
Score: 4.1 Sequence: TTGTTTGAAATCAC
Locus tag: Sdys1_01000032
|
||||
| Sdys1_01000032 | -123 | 4.1 | TTGTTTGAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -121
Score: 4.7 Sequence: TTGATTCCTATCAA
Locus tag: Sdys1_01000247
|
||||
| Sdys1_01000247 | -121 | 4.7 | TTGATTCCTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjA | ||||
| Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04957 | -73 | 4.7 | TTGATACTTATCAA |
| Edwardsiella tarda EIB202 | ETAE_1715 | -117 | 4.3 | TTGACACTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3518 | -121 | 4.7 | TTGATTCCTATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Serratia proteamaculans 568 | Spro_1968 | -89 | 4.6 | TTGATTATCGTCAA |
| Yersinia pestis KIM | y0848 | -152 | 4.7 | TTGATAAAGGTCAA |
|
Position: -116
Score: 3.7 Sequence: TTGAGTGAAATCCA
Locus tag: Sdys1_01000273
|
||||
| Sdys1_01000273 | -116 | 3.7 | TTGAGTGAAATCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |
|
Position: -86
Score: 4 Sequence: TTGATCCAGAACAG
Locus tag: Sdys1_01000315
|
||||
| Sdys1_01000315 | -86 | 4 | TTGATCCAGAACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nikA | ||||
| Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04926 | -228 | 3.8 | TTGATCCAGAACAC |
| Edwardsiella tarda EIB202 | ETAE_1379 | -80 | 3.4 | TTGATCCATCACAC |
| Enterobacter sp. 638 | Ent638_1834 | -85 | 3.5 | TTGATCCAGCACAG |
| Escherichia coli str. K-12 substr. MG1655 | b3476 | -86 | 4 | TTGATCCAGAACAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03850 | -6 | 4 | TTGATTATGCACAA |
|
Position: -340
Score: 4 Sequence: ATGATCTTAATAAA
Position: -75
Score: 3.7 Sequence: ATGAGGAAGGTCAA
Locus tag: Sdys1_01000376
|
||||
| Sdys1_01000376 | -340 | 4 | ATGATCTTAATAAA | |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malP | ||||
| Ortholog function: Maltodextrin phosphorylase (EC 2.4.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04838 | -73 | 3.7 | ATGAGGAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3417 | -340 | 4 | ATGATCTTAATAAA |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Salmonella typhimurium LT2 | STM3514 | 16 | 3.7 | TCAATAAAGATCAA |
| Serratia proteamaculans 568 | Spro_4636 | -359 | 3.8 | TTGCTATTGATCAC |
|
Position: -3
Score: 3.6 Sequence: TCGATGGAAAGCAA
Locus tag: Sdys1_01000377
|
||||
| Sdys1_01000377 | -3 | 3.6 | TCGATGGAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malQ | ||||
| Ortholog function: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04837 | -73 | 3.7 | ATGAGGAAGGTCAA |
| Enterobacter sp. 638 | Ent638_3829 | -340 | 3.7 | CTGATACGCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4135 | -251 | 4 | TTGATTACCATGAA |
| Escherichia coli str. K-12 substr. MG1655 | b3416 | -340 | 4 | ATGATCTTAATAAA |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03786 | -370 | 3.6 | TTGTTTTTATTAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0469 | -359 | 3.8 | ATGATTTATTTCAT |
| Salmonella typhimurium LT2 | STM3513 | 16 | 3.7 | TCAATAAAGATCAA |
| Serratia proteamaculans 568 | Spro_4635 | -359 | 3.8 | TTGCTATTGATCAC |
|
Position: -203
Score: 4.4 Sequence: TTGAGCCACATCAA
Position: -24
Score: 4 Sequence: TTAATGAAAAACAA
Locus tag: Sdys1_01000387
|
||||
| Sdys1_01000387 | -203 | 4.4 | TTGAGCCACATCAA | |
| -24 | 4 | TTAATGAAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -100
Score: 3.8 Sequence: TTGAATCTTAACAA
Locus tag: Sdys1_01000416
|
||||
| Sdys1_01000416 | -100 | 3.8 | TTGAATCTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiL | ||||
| Ortholog function: Predicted N-ribosylNicotinamide CRP-like regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2163 | -100 | 3.8 | TTGAATCTTAACAA |
|
Position: -133
Score: 4.4 Sequence: TTGAGGTAGGTCAA
Position: -78
Score: 3.8 Sequence: TTGATTTCGCGCAA
Locus tag: Sdys1_01000684
|
||||
| Sdys1_01000684 | -133 | 4.4 | TTGAGGTAGGTCAA | |
| -78 | 3.8 | TTGATTTCGCGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Enterobacter sp. 638 | Ent638_2055 | -77 | 3.9 | TTGATTTGACGCAA |
| Enterobacter sp. 638 | Ent638_2054 | -77 | 3.9 | TTGATTTGACGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -133 | 4.4 | TTGAGGTAGGTCAA |
| Salmonella typhimurium LT2 | STM1570 | -126 | 3.9 | TTGATTTGACGCAA |
|
Position: 7
Score: 3.6 Sequence: TTAATAAAGATAAA
Locus tag: Sdys1_01000776
|
||||
| Sdys1_01000776 | 7 | 3.6 | TTAATAAAGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydeJ | ||||
| Ortholog function: Competence/damage-inducible protein CinA | ||||
| Edwardsiella tarda EIB202 | ETAE_2862 | -5 | 3.4 | TCGCTATGGAACAA |
| Enterobacter sp. 638 | Ent638_3132 | -81 | 4.1 | TTCAGTAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1537 | -195 | 3.5 | TTGTTATAAGGCAT |
| 7 | 3.5 | TTAATAGAGATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03032 | -26 | 3.5 | TTTATCCAGAGCAA |
| Proteus mirabilis HI4320 | PMI0374 | -19 | 3.5 | TCGAGGTGAAACAA |
| Salmonella typhimurium LT2 | STM2830 | -347 | 3.3 | TTGACCGCCGTCAT |
| Salmonella typhimurium LT2 | STM1514 | -238 | 3.6 | GTCATATGCATCAA |
| Yersinia pestis KIM | y0880 | -297 | 3.7 | TTGATCGCAGTTAA |
|
Position: -113
Score: 4 Sequence: TTGATGTGGATTAA
Locus tag: Sdys1_01000788
|
||||
| Sdys1_01000788 | -113 | 4 | TTGATGTGGATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -114 | 3.7 | TTGACATGGATTAA |
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1499 | -116 | 3.7 | TTGACATGGATTAA |
| Serratia proteamaculans 568 | Spro_1687 | -164 | 4.2 | TTGATAGCAGACAA |
| -40 | 4.2 | ATGACGTTTATCAA | ||
|
Position: -3
Score: 3.7 Sequence: ATGATGAAAATCCA
Locus tag: Sdys1_01000790
|
||||
| Sdys1_01000790 | -3 | 3.7 | ATGATGAAAATCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01582 | -32 | 4.3 | |
| Escherichia coli str. K-12 substr. MG1655 | b1588 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1498 | -116 | 3.7 | TTGACATGGATTAA |
|
Position: -197
Score: 3.6 Sequence: GTGATCAAGATCAC
Position: -132
Score: 3.4 Sequence: TTAATGACCATCAT
Position: -29
Score: 3.8 Sequence: ATGTTTCATATCAT
Locus tag: Sdys1_01000953
|
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| Sdys1_01000953 | -197 | 3.6 | GTGATCAAGATCAC | |
| -132 | 3.4 | TTAATGACCATCAT | ||
| -29 | 3.8 | ATGTTTCATATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfA | ||||
| Ortholog function: Hydrogenase-4 component A (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1247 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2481 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2528 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -95
Score: 4.5 Sequence: TTGACTAAAGTCAA
Locus tag: Sdys1_01000973
|
||||
| Sdys1_01000973 | -95 | 4.5 | TTGACTAAAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -228
Score: 4.5 Sequence: TTGACTTTAGTCAA
Locus tag: Sdys1_01000974
|
||||
| Sdys1_01000974 | -228 | 4.5 | TTGACTTTAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -141
Score: 5.3 Sequence: TTGATATATATCAA
Locus tag: Sdys1_01000980
|
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| Sdys1_01000980 | -141 | 5.3 | TTGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfgF | ||||
| Ortholog function: Predicted cytochrome C-type biogenesis protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00285 | -142 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2503 | -141 | 5.4 | TTGATATATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02828 | -144 | 5.5 | TTGATTTATATCAA |
| Salmonella typhimurium LT2 | STM2503 | -143 | 5.1 | TTGACTTAAATCAA |
|
Position: -19
Score: 4.8 Sequence: TTGAGATACATCAA
Locus tag: Sdys1_01001035
|
||||
| Sdys1_01001035 | -19 | 4.8 | TTGAGATACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmp | ||||
| Ortholog function: Nitric oxide dioxygenase (EC 1.14.12.17) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00235 | -40 | 4.4 | TTGACATACATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2552 | -40 | 4.8 | TTGAGATACATCAA |
| Salmonella typhimurium LT2 | STM2556 | -40 | 4.8 | TTGATATACATCAT |
|
Position: -197
Score: 5.1 Sequence: TTGATTTGAATCAA
Position: -144
Score: 5.1 Sequence: TTGTTTTACATCAA
Locus tag: Sdys1_01001075
|
||||
| Sdys1_01001075 | -197 | 5.1 | TTGATTTGAATCAA | |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -16
Score: 3.3 Sequence: TTGAGGAAGAATAA
Locus tag: Sdys1_01001266
|
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| Sdys1_01001266 | -16 | 3.3 | TTGAGGAAGAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoB | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02730 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0984 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0431 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00393 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3876 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0107 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0442 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1089 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1020 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -150
Score: 4.2 Sequence: TTGATATATAACTA
Locus tag: Sdys1_01001397
|
||||
| Sdys1_01001397 | -150 | 4.2 | TTGATATATAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybdN | ||||
| Ortholog function: Predicted sulfotransferase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02557 | -295 | 3.8 | TTAATATTGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0602 | -359 | 3.7 | TTGCTGACAATCAT |
| -150 | 4.2 | TTGATATATAACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00647 | -221 | 3.5 | ACGATCTACATTAA |
|
Position: -78
Score: 4 Sequence: TTTATTTATACCAA
Position: 6
Score: 3.6 Sequence: CTGATGGAAAACAG
Locus tag: Sdys1_01001416
|
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| Sdys1_01001416 | -78 | 4 | TTTATTTATACCAA | |
| 6 | 3.6 | CTGATGGAAAACAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citC | ||||
| Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02541 | -184 | 4.1 | GTGAAATAAATCAA |
| Enterobacter sp. 638 | Ent638_3375 | 19 | 4.1 | TTTATAAAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2574 | -93 | 3.8 | TTGAGCCAAATAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00034 | -125 | 3.6 | TTAATTAACAACAT |
| Salmonella typhimurium LT2 | STM0058 | -227 | 4.2 | TTGATGGGTAACAA |
|
Position: -213
Score: 4.1 Sequence: TTGATTTATTTCAC
Locus tag: Sdys1_01001417
|
||||
| Sdys1_01001417 | -213 | 4.1 | TTGATTTATTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citA | ||||
| Ortholog function: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02540 | -216 | 4.1 | TTGATTTATTTCAC |
| Escherichia coli str. K-12 substr. MG1655 | b0619 | -213 | 4.1 | TTGATTTATTTCAC |
|
Position: -103
Score: 4.7 Sequence: TTGATTTTAATCAG
Locus tag: Sdys1_01001419
|
||||
| Sdys1_01001419 | -103 | 4.7 | TTGATTTTAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuC | ||||
| Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02537 | -106 | 4.7 | TTGATTTTAATCAG |
| Edwardsiella tarda EIB202 | ETAE_1192 | -147 | 4.1 | TTGACCAATATCAG |
| Enterobacter sp. 638 | Ent638_1152 | -102 | 4.4 | TTGATTTTAGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b0621 | -103 | 4.7 | TTGATTTTAATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00654 | -104 | 4.5 | TTGATTTGCATCAG |
| Proteus mirabilis HI4320 | PMI0652 | -127 | 4.5 | TTGATATATGTCAT |
| Salmonella typhimurium LT2 | STM0627 | -138 | 3.6 | TTCATCTTTAGCAA |
| -101 | 4.1 | GTGATTTTAATCAG | ||
| Serratia proteamaculans 568 | Spro_1579 | -107 | 4 | TTGACGGATATCAT |
|
Position: 3
Score: 4 Sequence: TTTACCTTTATCAA
Locus tag: Sdys1_01001793
|
||||
| Sdys1_01001793 | 3 | 4 | TTTACCTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfH | ||||
| Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1240 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2488 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2521 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -141
Score: 4.1 Sequence: TTAATTACGATCAA
Position: -126
Score: 3.8 Sequence: TTGATCTACATCTC
Locus tag: Sdys1_01001900
|
||||
| Sdys1_01001900 | -141 | 4.1 | TTAATTACGATCAA | |
| -126 | 3.8 | TTGATCTACATCTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: katG | ||||
| Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3942 | -141 | 4.4 | TTAATTAAGATCAA |
| -126 | 3.8 | TTGATCTACATCTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01819 | -248 | 4.1 | TTGTCATATCTCAA |
| Salmonella typhimurium LT2 | STM4106 | -126 | 3.8 | TTGATCTACATCTC |
| Serratia proteamaculans 568 | Spro_3192 | -139 | 3.7 | TTATTTAAAATCAG |
|
Position: -125
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: Sdys1_01001930
|
||||
| Sdys1_01001930 | -125 | 4 | CTGACCTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -115
Score: 4.8 Sequence: ATGATTTCAATCAA
Locus tag: Sdys1_01001994
|
||||
| Sdys1_01001994 | -115 | 4.8 | ATGATTTCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -131
Score: 4.6 Sequence: ATGTTGTAAATCAA
Locus tag: Sdys1_01001995
|
||||
| Sdys1_01001995 | -131 | 4.6 | ATGTTGTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -133 | 4.6 | ATGTTGTAAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0659 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0660 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -131 | 4.6 | ATGTTGTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2046 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0152 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4011 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0767 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -89
Score: 3.6 Sequence: TTGCTCTAAAGCAT
Locus tag: Sdys1_01002200
|
||||
| Sdys1_01002200 | -89 | 3.6 | TTGCTCTAAAGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -121
Score: 3.7 Sequence: TTTATATTCATTAA
Locus tag: Sdys1_01002209
|
||||
| Sdys1_01002209 | -121 | 3.7 | TTTATATTCATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -174
Score: 5.2 Sequence: TTGATTAACATCAA
Locus tag: Sdys1_01002226
|
||||
| Sdys1_01002226 | -174 | 5.2 | TTGATTAACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -33
Score: 4.7 Sequence: TTGACAAATATCAA
Locus tag: Sdys1_01002257
|
||||
| Sdys1_01002257 | -33 | 4.7 | TTGACAAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -101
Score: 3.3 Sequence: TTAACATTTGACAA
Locus tag: Sdys1_01002296
|
||||
| Sdys1_01002296 | -101 | 3.3 | TTAACATTTGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: puuA | ||||
| Ortholog function: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1297 | -101 | 3.3 | TTAACATTTGACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01021 | -103 | 3.3 | TTAACATTTGACAA |
| Serratia proteamaculans 568 | Spro_2068 | 31 | 3.7 | TTGTTCAGCATCAT |
|
Position: -249
Score: 4.8 Sequence: TTGAGCTACATCAA
Locus tag: Sdys1_01002340
|
||||
| Sdys1_01002340 | -249 | 4.8 | TTGAGCTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -81
Score: 3.8 Sequence: GTGATTCAAATCAC
Locus tag: Sdys1_01002395
|
||||
| Sdys1_01002395 | -81 | 3.8 | GTGATTCAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -237
Score: 4.3 Sequence: TTGATTTGGATCAC
Position: -100
Score: 3.9 Sequence: TTGATTTTCATCGG
Locus tag: Sdys1_01002448
|
||||
| Sdys1_01002448 | -237 | 4.3 | TTGATTTGGATCAC | |
| -100 | 3.9 | TTGATTTTCATCGG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -105
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: Sdys1_01002460
|
||||
| Sdys1_01002460 | -105 | 4.7 | TTGATCGTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01301 | -105 | 4.7 | TTGATCGTTATCAA |
| Enterobacter sp. 638 | Ent638_2315 | -100 | 4.7 | TTGATCGTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1224 | -105 | 4.7 | TTGATCGTTATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02214 | -106 | 4.6 | TTGATCGCTATCAA |
| Salmonella typhimurium LT2 | STM1764 | -105 | 4.7 | TTGATCGTTATCAA |
|
Position: -73
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: Sdys1_01002461
|
||||
| Sdys1_01002461 | -73 | 5.4 | TTGATTTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01299 | -229 | 5.5 | TTGATTTATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1223 | -111 | 4.7 | ATGATAAATATCAA |
| -73 | 5.4 | TTGATTTACATCAA | ||
| Salmonella typhimurium LT2 | STM1765 | -73 | 5.5 | TTGATTTATATCAA |
|
Position: -279
Score: 5.3 Sequence: TTGATGTAAATCAA
Position: -241
Score: 4.5 Sequence: TTGATATTTATCAT
Locus tag: Sdys1_01002462
|
||||
| Sdys1_01002462 | -279 | 5.3 | TTGATGTAAATCAA | |
| -241 | 4.5 | TTGATATTTATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Enterobacter sp. 638 | Ent638_2317 | -251 | 5.5 | TTGATATAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -268 | 4.9 | TTGATGCAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -279 | 5.4 | TTGATGTAAATCAA |
| -241 | 4.6 | TTGATATTTATCAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02216 | -251 | 5.5 | TTGATATAAATCAA |
| Proteus mirabilis HI4320 | PMI3569 | -235 | 4.5 | ATGATCTGCATCAA |
| Salmonella typhimurium LT2 | STM1766 | -281 | 5.5 | TTGATATAAATCAA |
| Serratia proteamaculans 568 | Spro_2899 | -301 | 5.4 | TTGATGTAAATCAA |
|
Position: -116
Score: 4.9 Sequence: ATGATCTATATCAA
Locus tag: Sdys1_01002580
|
||||
| Sdys1_01002580 | -116 | 4.9 | ATGATCTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -278
Score: 3.6 Sequence: GCCATTTAAATCAA
Locus tag: Sdys1_01002601
|
||||
| Sdys1_01002601 | -278 | 3.6 | GCCATTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuE | ||||
| Ortholog function: FMN reductase (EC 1.5.1.29) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02124 | -43 | 3.7 | TTAATGAAAATCGA |
| Enterobacter sp. 638 | Ent638_1456 | -181 | 3.5 | TTGACCTGAGGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0937 | -278 | 3.6 | GCCATTTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00973 | -182 | 3.8 | TTGACCTGCGACAA |
| Serratia proteamaculans 568 | Spro_1739 | -256 | 4.6 | TTGATTAAAAGCAA |
| Yersinia pestis KIM | y0246 | -252 | 3.7 | GTGATCTGGCTCAA |