Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Yersinia intermedia ATCC 29909

Reference regulog properties
Source regulog: NsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia intermedia ATCC 29909
Orthologous TF(s) YintA_01002621
Regulated genes 7
Built upon 73 sites [see more]
Predicted regulatory interactions in Yersinia intermedia ATCC 29909
Locus tag Position Score Sequence
Position: -44
Score: 5.7
Sequence: GTTGCATATTAAATGCATC
Locus tag: YintA_01000315
YintA_01000315 -44 5.7 GTTGCATATTAAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehB
Ortholog function: Tellurite resistance protein TehB
Yersinia pestis KIM y2361 -44 5.9 GTTGCATATAAAATGCATC
Serratia proteamaculans 568 Spro_0987 -63 5.5 CATGTATTTTATATGCAAC
Position: -217
Score: 4.7
Sequence: GCTGTATCTAAAATTCAAC
Locus tag: YintA_01000759
YintA_01000759 -217 4.7 GCTGTATCTAAAATTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufE
Ortholog function: Sulfur acceptor protein SufE for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1679 -248 4.1 TAGTCATTTTCAATACAAC
Salmonella typhimurium LT2 STM1374 -248 3.8 TAGTCATTTTCTATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02136 -116 4 TATGCTTATAAAAAGCACT
Enterobacter sp. 638 Ent638_1765 -249 3.8 TAGGCATTATCTATACATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2617 -191 3.9 AATAAATTAAAGATATACC
Position: -38
Score: 5.2
Sequence: CACGCATTACAAATGCAAC
Locus tag: YintA_01001011
YintA_01001011 -38 5.2 CACGCATTACAAATGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Yersinia pestis KIM y2819 -90 4.7 ATTGCATTAAAAATACCTT
-38 5.3 CACGCATTACAAATACAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -38 5.8 CAAGCATTTAAAATGCAAC
Edwardsiella tarda EIB202 ETAE_2215 -37 5.2 CAAGCATAATAAATGCAAC
Proteus mirabilis HI4320 PMI2112 -58 5.3 GTTGCATATTTAATGCAAC
Position: -173
Score: 6
Sequence: GATGCATTTAAAATGCATG
Locus tag: YintA_01003519
YintA_01003519 -173 6 GATGCATTTAAAATGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Escherichia coli str. K-12 substr. MG1655 b2552 -47 5.7 GATGCATTTGAGATACATC
Salmonella typhimurium LT2 STM2556 -79 4.8 GATCCATTTACAATGCAAG
-47 5.8 GATGCATTTGATATACATC
Citrobacter koseri ATCC BAA-895 CKO_00235 -47 5.5 GATGTATTTGACATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02877 -47 6.3 GATGCATTTAAAATGCATC
Enterobacter sp. 638 Ent638_3037 -47 6.2 GATGCATATAAAATACATC
Yersinia pestis KIM y1321 -58 6.1 GATGCATTTAAAATACATG
Serratia proteamaculans 568 Spro_3639 -59 6 GATGCATTTAAAATGCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3251 -51 5.9 GATTCATATAAAATACAAC
Edwardsiella tarda EIB202 ETAE_2822 -45 6.2 GTTGCATTTAAAATACAAC
Proteus mirabilis HI4320 PMI1868 -61 5.4 GTTGTATTAAAAATACATG
Photorhabdus luminescens subsp. laumondii TTO1 plu3292 -64 5.4 GTTGCATTTAAATTACATG
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