Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NrdR regulog to Yersinia intermedia ATCC 29909

Reference regulog properties
Source regulog: NrdR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Ribonucleotide reductases
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia intermedia ATCC 29909
Orthologous TF(s) YintA_01000904
Regulated genes 4
Built upon 70 sites [see more]
Predicted regulatory interactions in Yersinia intermedia ATCC 29909
Locus tag Position Score Sequence
Position: -141
Score: 5.1
Sequence: TACCCATATATAGTGT
Position: -139
Score: 3.9
Sequence: CCCATATATAGTGTTT
Position: -110
Score: 4.9
Sequence: CACCTATATGTAGTAG
Locus tag: YintA_01001620
YintA_01001620 -141 5.1 TACCCATATATAGTGT
-139 3.9 CCCATATATAGTGTTT
-110 4.9 CACCTATATGTAGTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Escherichia coli str. K-12 substr. MG1655 b4238 -208 4.3 GCACTATATATAGACT
-177 5 ACCCAATATGTTGTAT
Salmonella typhimurium LT2 STM4452 -207 4.5 TCACTACATATAGACT
-177 5 ACCCAATATGTTGTAT
Citrobacter koseri ATCC BAA-895 CKO_03580 -225 4.7 TCACTACATATAGAAC
-194 5 ACCCAATATGTTGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -207 4.7 TCACTACATATAGAAC
-176 5 GCCCAACATATTGTAT
Enterobacter sp. 638 Ent638_0437 -203 4.7 TCACTACATATAGAAC
-172 5.1 ACCCAACATCTTGTAT
Erwinia amylovora ATCC 49946 EAM_3059 -67 3 ATACCATATATAGATA
-36 3.4 GGACTATATGTAGTTG
Yersinia pestis KIM y0733 -142 5.1 TACCCATATATAGTGT
-111 4.7 CATCTATATGTAGTAG
Serratia proteamaculans 568 Spro_0525 -189 5 TATCTATATATAGTGC
-158 4.9 CACCTATATGTAGTAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -132 4.4 TTTCAATATATAGTGC
-101 5.5 TACCTACATATAGTGT
Edwardsiella tarda EIB202 ETAE_0423 -156 4.8 TTCCCATATATAGTGT
-124 5.1 CACCTATATATAGTAG
Proteus mirabilis HI4320 PMI3451 -143 4.7 TTACTATATATTGTGC
-111 4.2 ATACAACATATAGTAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -119 5.1 TTACTATATATTGTGT
-88 3.8 AGACTATATATAGCAA
Position: -162
Score: 5.4
Sequence: AAACTACATATAGTGT
Locus tag: YintA_01002375
YintA_01002375 -162 5.4 AAACTACATATAGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdH
Ortholog function: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Citrobacter koseri ATCC BAA-895 CKO_04022 -106 4.6 TTCCCATATCTTGTGT
-75 5.3 CATCTACATCTAGTAT
Erwinia amylovora ATCC 49946 EAM_2594 -121 5.1 ACGCTATATCTAGTAT
-89 4.2 ACGCTATATGGTGTGT
Yersinia pestis KIM y1225 -171 5.2 TAACTACATGTAGTGT
-140 5.3 GCACTACATATAGTAT
Serratia proteamaculans 568 Spro_3721 -164 4.4 ACACCATATATAGCGT
-133 5.4 TATCTACATATAGTAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3335 -162 4.4 ATCATATATCTTGTGT
-131 5.3 TATCTACATCTAGTAT
Proteus mirabilis HI4320 PMI0416 -107 4.9 ACACCATATCTAGTGT
-76 5.6 AACCTATATATAGTAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1287 -133 4.6 ACACCATATATAGTGC
-102 5.6 TCACTACATATAGTAT
Position: -122
Score: 5.7
Sequence: CCCCTACATATAGTGT
Locus tag: YintA_01003257
YintA_01003257 -122 5.7 CCCCTACATATAGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdA
Ortholog function: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Yersinia pestis KIM y2974 -165 3 ACTCACTATCTTGTTA
-132 5.5 CCACTATATATTGTGT
Serratia proteamaculans 568 Spro_3271 -83 3.2 AACCCCTATATATAGT
-81 5.7 CCCCTATATATAGTGT
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