Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Yersinia intermedia ATCC 29909

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia intermedia ATCC 29909
Orthologous TF(s) YintA_01003202
Regulated genes 15
Built upon 125 sites [see more]
Predicted regulatory interactions in Yersinia intermedia ATCC 29909
Locus tag Position Score Sequence
Position: -204
Score: 4.5
Sequence: TAACCAATAGGGAGTA
Locus tag: YintA_01000344
YintA_01000344 -204 4.5 TAACCAATAGGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Serratia proteamaculans 568 Spro_2898 -240 4.6 TACCTCTAACGAAGTA
Proteus mirabilis HI4320 PMI3570 -237 4.8 TACTCCAAAGGGAGTA
Position: -99
Score: 4.3
Sequence: TACTCCCTATTGGTTA
Locus tag: YintA_01000345
YintA_01000345 -99 4.3 TACTCCCTATTGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narL
Ortholog function: Nitrate/nitrite response regulator protein NarL, LuxR family
Escherichia coli str. K-12 substr. MG1655 b1221 -228 4 TTACCCATAGTGAGTA
-118 3.8 TAACTCTTTCCGGGTA
Salmonella typhimurium LT2 STM1767 -230 4.3 TTACCCTTAATGAGTA
-120 4.5 TAACTCGTTATAGGTA
Citrobacter koseri ATCC BAA-895 CKO_01296 -249 4.4 TGCCCCTTAGTGAGTA
-139 4.5 TAACTCGTTATAGGTA
Serratia proteamaculans 568 Spro_2900 -138 4.7 TACTTCGTTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2028 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Proteus mirabilis HI4320 PMI3568 -73 4.5 TACTCCCTTTGGAGTA
Position: -177
Score: 3.5
Sequence: CCCCCCATAAGCGGTA
Locus tag: YintA_01000586
YintA_01000586 -177 3.5 CCCCCCATAAGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -111
Score: 4.6
Sequence: TACCTCTATAAGAGTA
Locus tag: YintA_01001065
YintA_01001065 -111 4.6 TACCTCTATAAGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Escherichia coli str. K-12 substr. MG1655 b2201 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2254 -132 4.8 TACCTCTATCGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00574 -612 4.6 TACCCCAATCGGGGTA
Yersinia pestis KIM y1567 -112 4.8 TACCTCTATAAGGGTA
Serratia proteamaculans 568 Spro_3391 -49 4.9 TACCCCTATTGGAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Edwardsiella tarda EIB202 ETAE_2461 -64 4.4 TACCCCGAATGAGTTA
Position: -100
Score: 4.5
Sequence: TACCACCTTAGAGGTA
Locus tag: YintA_01001945
YintA_01001945 -100 4.5 TACCACCTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -54
Score: 4.9
Sequence: TACTCATTTATGGGTA
Locus tag: YintA_01002395
YintA_01002395 -54 4.9 TACTCATTTATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -259
Score: 4
Sequence: TACCTAAGAATAGTTA
Locus tag: YintA_01002416
YintA_01002416 -259 4 TACCTAAGAATAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -84
Score: 4.7
Sequence: TACCTCTTTGTGGTTA
Locus tag: YintA_01002607
YintA_01002607 -84 4.7 TACCTCTTTGTGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Position: -165
Score: 3.8
Sequence: TAACCCTAAAGAGTAA
Locus tag: YintA_01003201
YintA_01003201 -165 3.8 TAACCCTAAAGAGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
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