Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Candidatus Blochmannia pennsylvanicus str. BPEN

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Candidatus Blochmannia pennsylvanicus str. BPEN
Orthologous TF(s) No orthologous TFs found
Regulated genes 22
Built upon 685 sites [see more]
Predicted regulatory interactions in Candidatus Blochmannia pennsylvanicus str. BPEN
Locus tag Position Score Sequence
Position: -171
Score: 3.5
Sequence: TCATTAAAAATCAA
Locus tag: BPEN_021
BPEN_021 -171 3.5 TCATTAAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638 Ent638_4063 -132 3.6 ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -143 3.5 ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -146 4.2 TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -346 3.6 TTATGTCAAATCAA
Proteus mirabilis HI4320 PMI3036 -164 3.8 TTTATTTAAAATAA
-85 4 ATGATTTTCATTAA
Position: -300
Score: 4
Sequence: ATGATAGATATCAT
Position: -141
Score: 3.7
Sequence: TTTATAAAAAACAT
Locus tag: BPEN_024
BPEN_024 -300 4 ATGATAGATATCAT
-141 3.7 TTTATAAAAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0048 -140 4 TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655 b3493 -116 3.8 TTGAGTGAAATCCA
Salmonella typhimurium LT2 STM3589 -116 4.2 GTGATATCAAACAA
Yersinia pestis KIM y3862 -201 4.1 TTGAATAAAATCAT
Position: -271
Score: 3.5
Sequence: TTTATGATGATCAT
Position: -223
Score: 3.7
Sequence: ATGTTTTTTATAAA
Position: -119
Score: 3.4
Sequence: TTCATGAAATACAA
Position: -64
Score: 4.1
Sequence: ATGATATCTATCAT
Position: -3
Score: 3.5
Sequence: TTTATGTCAAACAG
Position: 12
Score: 3.7
Sequence: CTTTTTTTTATCAA
Locus tag: BPEN_025
BPEN_025 -271 3.5 TTTATGATGATCAT
-223 3.7 ATGTTTTTTATAAA
-119 3.4 TTCATGAAATACAA
-64 4.1 ATGATATCTATCAT
-3 3.5 TTTATGTCAAACAG
12 3.7 CTTTTTTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiA
Ortholog function: 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-)
Erwinia amylovora ATCC 49946 EAM_0261 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0627 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4040 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4377 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2752 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4463 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0569 -253 3.3 CTGATATTTATAAT
Position: -5
Score: 3.3
Sequence: TTGTTATGATTAAA
Position: 14
Score: 3.7
Sequence: TTTATACTTAACAA
Position: 37
Score: 3.5
Sequence: TTGTTTTAGGTAAT
Locus tag: BPEN_248
BPEN_248 -5 3.3 TTGTTATGATTAAA
14 3.7 TTTATACTTAACAA
37 3.5 TTGTTTTAGGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoE
Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Citrobacter koseri ATCC BAA-895 CKO_02733 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0981 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0428 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00390 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3879 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0105 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0439 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1086 -293 3.6 TTCTTTTACATTAA
Position: -58
Score: 3.5
Sequence: TTAATATAAAGCAT
Locus tag: BPEN_251
BPEN_251 -58 3.5 TTAATATAAAGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoB
Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02730 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0984 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0431 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00393 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3876 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0107 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0442 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1089 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1020 -223 3.5 TTGTTTTTCCTTAA
Position: -279
Score: 3.9
Sequence: TTAATTTACATTAA
Locus tag: BPEN_252
BPEN_252 -279 3.9 TTAATTTACATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02729 -267 3.7 TTGTTGATAATTAA
Position: -235
Score: 3.6
Sequence: ATTATGCTAATCAA
Position: 0
Score: 3.7
Sequence: ATGATCAAAAAAAA
Locus tag: BPEN_337
BPEN_337 -235 3.6 ATTATGCTAATCAA
0 3.7 ATGATCAAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -276
Score: 3.3
Sequence: ATGATGTATAAAAT
Position: -231
Score: 3.6
Sequence: TTTTTTAAAATAAA
Locus tag: BPEN_485
BPEN_485 -276 3.3 ATGATGTATAAAAT
-231 3.6 TTTTTTAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -109
Score: 3.5
Sequence: TTTATCAAAAAAAA
Position: -78
Score: 4.1
Sequence: ATGATTAACATAAA
Locus tag: BPEN_504
BPEN_504 -109 3.5 TTTATCAAAAAAAA
-78 4.1 ATGATTAACATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoG
Ortholog function: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00513 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2380 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2283 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02673 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3084 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2323.S -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3303 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1635 -465 3.6 TTTTATTAAAACAA
Position: -190
Score: 3.6
Sequence: TTGTACTAAATTAA
Position: -46
Score: 3.7
Sequence: TTGATGTAAATGTA
Position: 4
Score: 3.9
Sequence: GTGATATTTATCAT
Locus tag: BPEN_509
BPEN_509 -190 3.6 TTGTACTAAATTAA
-46 3.7 TTGATGTAAATGTA
4 3.9 GTGATATTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -253
Score: 3.6
Sequence: TTATTATATATAAA
Locus tag: BPEN_624
BPEN_624 -253 3.6 TTATTATATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
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