Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Yersinia pseudotuberculosis YPIII

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pseudotuberculosis YPIII
Orthologous TF(s) YPK_0248
Regulated genes 198
Built upon 2301 sites [see more]
Predicted regulatory interactions in Yersinia pseudotuberculosis YPIII
Locus tag Position Score Sequence
Position: -57
Score: 4.1
Sequence: ATTTGTGTGCTGAATCGCGTTA
Locus tag: YPK_0005
YPK_0005 -57 4.1 ATTTGTGTGCTGAATCGCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yidA
Ortholog function: Phosphatase YidA
Yersinia pestis KIM y4109 -57 4.1 ATTTGTGTGCTGAATCGCGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4428 -228 3.8 TTACGTTATACCCGTCATACTT
Position: -340
Score: 4.6
Sequence: ACTTGTGACAAATGTCACATTT
Position: -296
Score: 4.8
Sequence: AATCGTGACATAAGTCACACTT
Position: -223
Score: 4.6
Sequence: AGATGTGATCTTAATCAACAAA
Locus tag: YPK_0026
YPK_0026 -340 4.6 ACTTGTGACAAATGTCACATTT
-296 4.8 AATCGTGACATAAGTCACACTT
-223 4.6 AGATGTGATCTTAATCAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b3599 -206 4.5 TTTTGTGATGAACGTCACGTCA
-162 5.4 TTATGTGATTGATATCACACAA
-113 3.3 TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2 STM3685 -207 4.8 CTTTGTGATCAATATCACATCA
-163 5.4 TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_05054 -203 5.2 TTTTGTGATCAATATCACATCA
-159 5 TCATGTGATCCAAATCACACAA
-110 3.4 TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03942 -208 4.9 TTTTGTGATCATCATCACTAAA
-164 5.2 TCATGTGATCCAAATCACATAA
-115 3.4 TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638 Ent638_0136 -224 3.4 TATTTTTTTCATACTCTCATTT
-205 4.8 TTTTGTGATGGCGATCACCTCA
-161 5.1 TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946 EAM_3416 -229 3.3 CATTGCGAATATCTTTACACTT
-210 3.9 CTTCGTGACTCATGTCACTAAA
-166 4.8 TTAAGTGACCCGCATCACACTT
-95 3.2 CGTTTTGATCGTGATCCCTCAA
-34 3.5 ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM y4087 -223 4.6 AGATGTGATCTTAATCAACAAA
-179 4.5 TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568 Spro_0072 -195 5.2 AAATGTGATGTATATCACTATA
-151 4.5 GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0087 -230 5.1 TTTTGTGAAGTAAATCACCTAT
-186 4.5 TTGTGTGATTTTTGTCACGTTG
Position: -324
Score: 4.1
Sequence: TTTTATGATAACGATCATGTTT
Position: -220
Score: 4.6
Sequence: TTATGAGATCTACACCACAATT
Locus tag: YPK_0056
YPK_0056 -324 4.1 TTTTATGATAACGATCATGTTT
-220 4.6 TTATGAGATCTACACCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655 b3565 -224 3.9 ATTTATGACCGAGATCTTACTT
-134 4.2 TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2 STM3661 -260 3.9 TTATGCGAAATTCATCACAGCA
-133 4.4 TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895 CKO_05021 -214 4.1 AATTATGACCGAGATCGTACTT
-122 4.2 TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03929 -234 4.1 TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638 Ent638_0156 -231 3.8 ATTTATGACCGTGATCTGATTT
-135 3.9 TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM y4057 -220 4.6 TTATGAGATCTACACCACAATT
Serratia proteamaculans 568 Spro_0098 -222 3.9 TTTTATGATGGCGGTCATGCTT
-129 4.6 TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0097 -223 4.7 TTTTTTGATGCGGGTCATATTT
-135 4.4 TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2275 -251 4.6 ATTTATGAGATAAATCACACAA
Position: -264
Score: 4.8
Sequence: AATTGTGGTGTAGATCTCATAA
Position: -160
Score: 4.2
Sequence: AAACATGATCGTTATCATAAAA
Locus tag: YPK_0057
YPK_0057 -264 4.8 AATTGTGGTGTAGATCTCATAA
-160 4.2 AAACATGATCGTTATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Escherichia coli str. K-12 substr. MG1655 b3566 -253 4.2 AAGTGTGCGCTCGCTCGCAAAA
-163 3.7 AAGTAAGATCTCGGTCATAAAT
Citrobacter koseri ATCC BAA-895 CKO_05022 -254 4.1 AAGTGTGCGCCGCCTCGCAAAA
-162 3.8 AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03930 -234 3.8 AAATACGATCGCCGTCATAATT
Enterobacter sp. 638 Ent638_0155 -264 3.9 AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM y4056 -264 4.8 AATTGTGGTGTAGATCTCATAA
-160 4.2 AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568 Spro_0099 -259 4.4 AAATGTGCGACAGATCTCATAA
-166 3.7 AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0098 -272 4.5 AAATATGACCCGCATCAAAAAA
Position: -276
Score: 4.9
Sequence: ATATGTGATTTGGTGCGCAAAT
Locus tag: YPK_0076
YPK_0076 -276 4.9 ATATGTGATTTGGTGCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895 CKO_02357 -123 3.8 AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00795 -124 4 AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638 Ent638_1263 -120 4 AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946 EAM_1253 -121 3.8 TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM y4038 -261 4.9 ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568 Spro_0805 -196 4.8 TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3193 -203 4.7 ATTTGTGATTATAAACACAAAA
Position: -211
Score: 3.9
Sequence: AGATGTGAGCCATATAACCTCT
Locus tag: YPK_0089
YPK_0089 -211 3.9 AGATGTGAGCCATATAACCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppB
Ortholog function: dipeptide ABC transporter, permease protein
Citrobacter koseri ATCC BAA-895 CKO_04993 -121 3.8 TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03898 -62 4 ATATGCAAACAACATCACAATT
Yersinia pestis KIM y3826 -211 3.9 AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568 Spro_0139 -271 3.8 TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1 plu0301 -223 3.7 AAATGTGCGCATTGTCATGTTT
Position: -197
Score: 3.5
Sequence: TTTTGTGATAGACGTCTTGCCA
Locus tag: YPK_0119
YPK_0119 -197 3.5 TTTTGTGATAGACGTCTTGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655 b1761 -106 3.5 TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2 STM1299 -107 3.6 TTTCTTGCTTACCGTCACATTG
-55 3.6 TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895 CKO_01789 -107 3.4 TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638 Ent638_1685 -110 3.3 AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -234 3.6 TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320 PMI3008 -195 3.4 AATCCTGATTTTATTAGCCTTT
-88 3.5 AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -92 3.5 AAACACAACTTACCTCACATTT
Position: -249
Score: 3.6
Sequence: CATTATGATCTACCTTAAATTC
Position: -151
Score: 3.6
Sequence: ATTAGTGATCATTGTCAAAACC
Position: -48
Score: 3.6
Sequence: TTGAGTGTTTGCTTACACATTA
Locus tag: YPK_0120
YPK_0120 -249 3.6 CATTATGATCTACCTTAAATTC
-151 3.6 ATTAGTGATCATTGTCAAAACC
-48 3.6 TTGAGTGTTTGCTTACACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638 Ent638_3909 -195 3.8 AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM y3859 -151 3.6 ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568 Spro_4691 -123 4 CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320 PMI3009 -290 3.6 AGTTGTTCGCTTTTTCAAAAAA
-113 3.8 AGTTGTGATCAAGGCAACATCT
Position: -147
Score: 4.1
Sequence: TATCATGATACCGGTAACAAAT
Position: -123
Score: 4.6
Sequence: AGATGTGACTTTTATCACAACA
Locus tag: YPK_0135
YPK_0135 -147 4.1 TATCATGATACCGGTAACAAAT
-123 4.6 AGATGTGACTTTTATCACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Yersinia pestis KIM y3875 -217 4 TATGTTGATCTCTATCTCAGAA
-147 4.1 TATCATGATACCGGTAACAAAT
-123 4.6 AGATGTGACTTTTATCACAACA
Serratia proteamaculans 568 Spro_4651 -243 4.2 AAGTTTGATCTCTATCCCAGAA
-173 3.8 TATCATGATACCGGTAACAATG
-147 3.7 TGCGGTGATATTGATCGCGATA
Position: -129
Score: 4.4
Sequence: AAATGTTACCTCCATCACGCAT
Position: -57
Score: 3.6
Sequence: AATCGTGAGCGAAAACGAACAT
Locus tag: YPK_0152
YPK_0152 -129 4.4 AAATGTTACCTCCATCACGCAT
-57 3.6 AATCGTGAGCGAAAACGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b3426 -116 4.4 TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2 STM3526 -116 4.4 TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895 CKO_04845 -116 4.5 TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03792 -119 3.7 ATATGTTACACCCATCACTTCA
-58 3.7 TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638 Ent638_3835 -116 4.4 TTATGTTATCTCTATCACTCAA
-55 4 TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946 EAM_3265 -124 4 AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM y3891 -129 4.4 AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568 Spro_4642 -129 3.6 AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4141 -144 4.3 TAATGTGACAACTATCATCATA
-124 4.4 TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202 ETAE_3312 -124 4.3 TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320 PMI2930 -129 4.4 AATTGTTATTTATATCACGCAG
Position: -202
Score: 4.6
Sequence: AATTGTGATCCGTAGCAACTTA
Locus tag: YPK_0160
YPK_0160 -202 4.6 AATTGTGATCCGTAGCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655 b3418 -142 4.3 AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2 STM3515 -143 4.3 AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_04840 -142 4.3 AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03788 -142 4.4 ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638 Ent638_3831 -142 4.6 AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM y3900 -202 4.6 AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568 Spro_4637 -203 4 AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202 ETAE_3303 -212 3.8 AAATGTGATCAGCCGCAATTTC
Position: -137
Score: 4.1
Sequence: TAAGTTGCTACGGATCACAATT
Locus tag: YPK_0161
YPK_0161 -137 4.1 TAAGTTGCTACGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: maltodextrin phosphorylase
Escherichia coli str. K-12 substr. MG1655 b3417 -141 4.5 TTAAGTGGTTGAGATCACATTT
Citrobacter koseri ATCC BAA-895 CKO_04838 -139 4 TTAAGTGGCGGCGATCACACTT
Serratia proteamaculans 568 Spro_4636 -139 4.4 AAAAGTGCCTGAGATCACAATT
Position: -130
Score: 4.2
Sequence: ATTCGTGTTCCATCTCTCATAA
Position: -80
Score: 3.8
Sequence: ATATTTGATAGCTATCGCTGTT
Locus tag: YPK_0174
YPK_0174 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b3403 -240 4.2 GAATGCGATTCCACTCACAATA
-137 4 TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2 STM3500 -241 4 GAATGCGATTACAGTCACATTA
-107 3.9 AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895 CKO_04825 -107 3.9 AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03773 -242 3.7 GAAAGCGATTACATTCACATTT
-138 3.7 CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638 Ent638_3816 -241 4.1 GTATGCGATTACATTCACATTA
Yersinia pestis KIM y3918 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568 Spro_4617 -80 4.1 ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4106 -81 4 TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202 ETAE_3277 -82 3.9 TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320 PMI3015 -131 4 ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0100 -86 3.8 TTTTTTGATAACTATCGCTGTT
Position: -186
Score: 3.7
Sequence: TATTGTGACTGCGTTAGCTTTG
Locus tag: YPK_0178
YPK_0178 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655 b3398 -288 3.6 TTGTGCGATATCGGACACGCTT
-123 3.8 TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2 STM3495 -238 3.6 TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895 CKO_04821 -290 3.9 TTGTGCGATATACAGCACGGTT
-238 3.7 TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03769 -282 3.8 TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638 Ent638_3811 -287 3.7 TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM y3922 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Position: -4
Score: 3.4
Sequence: AAAAATGAGCAAAATAAAAATT
Locus tag: YPK_0235
YPK_0235 -4 3.4 AAAAATGAGCAAAATAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655 b3365 -124 3.2 AAAATTTATACAAATCAGCAAT
-76 3.4 GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2 STM3474 -76 3.4 GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895 CKO_04789 -76 3.4 GAATTTGATTTACATCAATAAG
Enterobacter sp. 638 Ent638_3793 -76 3.3 GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM y3945 -75 3.7 CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -186 4.2 AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320 PMI1479 -129 3.5 TTTTGTGCACTTTATTAACAAT
Position: -277
Score: 4.5
Sequence: AAATGAGATATTTCTCGCAAAA
Locus tag: YPK_0242
YPK_0242 -277 4.5 AAATGAGATATTTCTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM y3951 -247 4.5 AAATGAGATATTTCTCGCAAAA
-81 3.6 AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568 Spro_4589 -181 3.9 ATGCGTGATGCAGTTGGCAAAA
Position: -309
Score: 3
Sequence: AATTTAGACTACCCTTTCATTT
Locus tag: YPK_0248
YPK_0248 -309 3 AATTTAGACTACCCTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -181
Score: 3.4
Sequence: AAACGTGATTTAACGCCTGATT
Locus tag: YPK_0354
YPK_0354 -181 3.4 AAACGTGATTTAACGCCTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655 b4000 -179 3.4 AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895 CKO_02986 -179 3.4 AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04382 -179 3.4 AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638 Ent638_0213 -179 3.5 AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM y0499 -181 3.4 AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568 Spro_0290 -181 3.4 AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0238 -197 3.3 AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202 ETAE_0183 -182 3.3 AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320 PMI2771 -183 3.7 AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0492 -179 3.4 AAACGTGATTTAATGCTTTAAA
Position: -288
Score: 3.3
Sequence: ATGAGTTATAGCCATTAAAAAT
Position: -226
Score: 3.4
Sequence: AAATGTTAACGATATGATAAAT
Locus tag: YPK_0364
YPK_0364 -288 3.3 ATGAGTTATAGCCATTAAAAAT
-226 3.4 AAATGTTAACGATATGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655 b4014 -117 3.6 AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2 STM4183 -168 3.3 TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895 CKO_03906 -166 3.3 TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM y0015 -254 3.3 ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568 Spro_4503 -228 3.5 TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3991 -185 3.3 TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320 PMI2764 -68 3.7 ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -65 3.8 GTTTTTGATTTATTTTAAATAT
Position: -286
Score: 4.2
Sequence: TATTGTGCCTAACACCACAAAA
Locus tag: YPK_0378
YPK_0378 -286 4.2 TATTGTGCCTAACACCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Yersinia pestis KIM y0028 -286 4.2 TATTGTGCCTAACACCACAAAA
-257 4 CAGTGTTAACTGAGTCACAATA
Serratia proteamaculans 568 Spro_4472 -199 4 ATCTGTGATCTGCCTGGCAAAA
-165 3.6 TTTTGTGTCTGACGCCACAGAA
-136 4.4 CAATGTTAACTGGATCACACTA
Position: -159
Score: 4.3
Sequence: TAACGTGATGTTATTTATAATT
Locus tag: YPK_0453
YPK_0453 -159 4.3 TAACGTGATGTTATTTATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dusB
Ortholog function: tRNA-dihydrouridine synthase B
Escherichia coli str. K-12 substr. MG1655 b3260 -297 4.4 AAGTGCGAGCAAGCTCACAAAA
-212 4.3 AATTGAGAACTTACTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_04672 -212 3.7 AAATGAGAAGTTACGCAAAATT
Enterobacter sp. 638 Ent638_3699 -299 4.1 AAATGGGACCCAGATCGCAAAG
Erwinia amylovora ATCC 49946 EAM_3146 -219 4 TATTGTTAACTTGCTCACAAGA
Yersinia pestis KIM y0213 -57 4.3 TAACGTGATGTTATTTATAATT
Proteus mirabilis HI4320 PMI3623 -94 3.8 TTTCGCGATTTGGTTAAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4088 -191 3.7 CTAAGTGATAAACTTTACCAAT
Position: -55
Score: 5.1
Sequence: ATGTGTGATCTAAATCACTTTT
Locus tag: YPK_0482
YPK_0482 -55 5.1 ATGTGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3243 -37 5.3 TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2 STM3367 -37 5.3 TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_04651 -37 5.3 ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03652 -55 5.1 ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638 Ent638_3680 -37 5.3 ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946 EAM_3128 -37 5.3 AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM y0180 -55 5.1 ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568 Spro_4393 -37 4.9 ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0276 -37 5.1 TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202 ETAE_3129 -131 4.5 ATCTGTGACGCAAATCACTTTT
Position: -269
Score: 5.2
Sequence: AAAAGTGATTTAGATCACACAT
Locus tag: YPK_0483
YPK_0483 -269 5.2 AAAAGTGATTTAGATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3242 -167 5.4 AAAAGTGATTTAGATCACATAA
Salmonella typhimurium LT2 STM3366 -166 5.4 AAAAGTGATTTAGATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_04650 -168 5.4 AAAAGTGATTTAGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03651 -116 5.2 AAAAGTGATTTAGATCACACAT
-63 3.7 TATTGTTAGCTACATAATAAAC
Enterobacter sp. 638 Ent638_3679 -165 5.4 AAAAGTGATTTAGATCACATAT
Yersinia pestis KIM y0179 -269 5.2 AAAAGTGATTTAGATCACACAT
Serratia proteamaculans 568 Spro_4392 -293 5.1 AAAAGTGATTTAGATCACAGAT
-89 3.8 ATTTGTGGTGCGTGTCAGCTAA
Position: -339
Score: 4.6
Sequence: ATTTGTGATCTTCAATACAAAA
Locus tag: YPK_0495
YPK_0495 -339 4.6 ATTTGTGATCTTCAATACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b4240 -101 3.8 AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895 CKO_03571 -156 3.8 ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638 Ent638_0439 -106 4 TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568 Spro_0529 -124 3.8 TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu3288 -127 4.3 CAATGTGATCTTCAACCCATTT
Position: -229
Score: 4.1
Sequence: AAAGTTGAGTGACATCACAAAA
Locus tag: YPK_0554
YPK_0554 -229 4.1 AAAGTTGAGTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Yersinia pestis KIM y3600 -229 4.1 AAAGTTGAGTGACATCACAAAA
-109 3.6 TTTTGCGATCAATATCTATAAA
Serratia proteamaculans 568 Spro_4321 -231 4.1 AAAGTTGAGTGATATCACAAAA
Position: -158
Score: 4
Sequence: ATTCATGACGGCTATCACAATC
Locus tag: YPK_0563
YPK_0563 -158 4 ATTCATGACGGCTATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655 b3081 -112 3.9 CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2 STM3219 -113 4.3 TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895 CKO_04487 -113 4.3 TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -111 3.9 TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638 Ent638_3539 -111 3.9 ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946 EAM_0507 -169 3.8 AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM y3589 -131 4 ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568 Spro_4309 -126 4.2 ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320 PMI3702 -213 3.8 TATTATTATATGATTAAAAAAT
-103 3.8 TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -161 4.3 TTTCATGACCTTCATCACATTC
Position: -293
Score: 3.6
Sequence: AACAGTGATGAGAATCTCGGTA
Position: -216
Score: 3.7
Sequence: AATTGTGCCCTTTTTCAGGGAA
Locus tag: YPK_0851
YPK_0851 -293 3.6 AACAGTGATGAGAATCTCGGTA
-216 3.7 AATTGTGCCCTTTTTCAGGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2927 -213 4.7 AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2 STM3070 -213 5 AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_04297 -213 4.8 AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03356 -213 4.8 AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638 Ent638_3340 -215 4.5 AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946 EAM_2813 -208 4.1 TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM y3309 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3913 -194 4.1 TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202 ETAE_2958 -233 4.9 AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320 PMI0241 -253 4.4 AAATGTTAACAAGAGCACATTT
Position: -249
Score: 3.7
Sequence: TAATTCTAGCGAGATCACAGTT
Locus tag: YPK_0857
YPK_0857 -249 3.7 TAATTCTAGCGAGATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03350 -107 3.8 CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638 Ent638_3334 -126 3.9 CCCTGTGACCGGTGTCACATTA
-48 3.7 ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM y3303 -249 3.7 TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202 ETAE_2951 -48 3.8 TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3610 -41 3.6 CATAGTGATATTCAGAAAAATA
Position: -114
Score: 4.2
Sequence: AACTGTGATCTCGCTAGAATTA
Locus tag: YPK_0858
YPK_0858 -114 4.2 AACTGTGATCTCGCTAGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03349 -82 3.9 TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638 Ent638_3333 -47 3.8 TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM y3302 -114 4.2 AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202 ETAE_2950 -276 4 TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320 PMI2032 -96 3.8 TAAAATGTTGTGTCTCAAATTT
Position: -228
Score: 4.8
Sequence: TTTGGTGATATATATCACATTC
Locus tag: YPK_0859
YPK_0859 -228 4.8 TTTGGTGATATATATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2913 -210 4.1 TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2 STM3062 -217 4.5 TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03348 -214 4.6 TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638 Ent638_3332 -215 4.1 TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM y3301 -126 4.8 TTTGGTGATATATATCACATTC
Serratia proteamaculans 568 Spro_3923 -215 4.4 TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3905 -214 3.9 TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320 PMI2031 -210 4 TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1 plu3605 -207 4.4 TTTAGTGATATATTTCATATCT
-178 4.2 TTATTTGATCTAAATCCTAATT
-105 4.4 TTATGTGATGGGAATAGCAATC
Position: -299
Score: 5.4
Sequence: TAATGTGACTTTGTTCACATTA
Position: -122
Score: 3.8
Sequence: TTCTTTGAAAGAATTCTCATAA
Position: -21
Score: 4.9
Sequence: TAATTTGAGGGAGATCACAAAA
Locus tag: YPK_0979
YPK_0979 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02295
Ortholog function: hypothetical protein
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Position: -244
Score: 4.5
Sequence: TTTTGCGATAACCATCACATTG
Locus tag: YPK_1144
YPK_1144 -244 4.5 TTTTGCGATAACCATCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Yersinia pestis KIM y1251 -214 4.5 TTTTGCGATAACCATCACATTG
Serratia proteamaculans 568 Spro_0834 -177 4.6 ATTTGCGAGACAGATCACACTA
-143 3.6 AAATGTGAAGAGGGTCAATCAG
Position: -184
Score: 3.8
Sequence: AAAATTGATATAAAACATAAAT
Position: -131
Score: 4.2
Sequence: AAAATTGATTTGAATCAAAGAA
Locus tag: YPK_1174
YPK_1174 -184 3.8 AAAATTGATATAAAACATAAAT
-131 4.2 AAAATTGATTTGAATCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568 Spro_3682 -140 3.8 AAAATTGACTTTAATCAAAGAA
Position: -42
Score: 4.4
Sequence: ATATTTTATCTTTTTCACATTC
Locus tag: YPK_1302
YPK_1302 -42 4.4 ATATTTTATCTTTTTCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaB
Ortholog function: inosine-5'-monophosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2508 -165 4.2 ACATGTGAGCGAGATCAAATTC
Salmonella typhimurium LT2 STM2511 -164 4.2 ACATGTGAGCGGGATCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_00279 -165 4.2 ACATGTGAGCGGGATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02834 -162 4.3 ACATGTGAGCAAGATCAAACTT
Enterobacter sp. 638 Ent638_2999 -162 4.5 ACATGTGAGCAGGATCAAATTT
Erwinia amylovora ATCC 49946 EAM_2465 -174 4.6 ACATGTGATGAAGATCAAACTT
Yersinia pestis KIM y1362 -89 4.8 ACATGTGACCTGGATCAAATTT
Serratia proteamaculans 568 Spro_3596 -174 4.8 ACATGTGACCCAGATCAAATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3209 -175 4.8 CATTGTGAGCCAGATCAAATTT
Edwardsiella tarda EIB202 ETAE_2787 -175 4.7 TCATGTGACCTAGATCAAACTT
Proteus mirabilis HI4320 PMI1546 -173 4.7 TCATGTGAGCCAGATCAAATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2713 -176 4.4 ACATGTGAGAAAGATCAAATTT
Position: -92
Score: 3.7
Sequence: GATTGTGATAAATCACTCACTA
Locus tag: YPK_1391
YPK_1391 -92 3.7 GATTGTGATAAATCACTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655 b2463 -257 3.9 ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2 STM2472 -240 3.8 ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638 Ent638_2958 -231 4.1 ATACATGACGTACTTAACAAAA
Yersinia pestis KIM y1449 -92 3.7 GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568 Spro_3472 -209 3.6 CTTTGTTATCAAACTCACTATC
-90 4.1 GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2719 -74 4 TGTTATGATTTGACACACAGTA
Position: -136
Score: 4.4
Sequence: TTATGTGATCAAGCCCACTAAT
Position: -84
Score: 3.9
Sequence: ATTTGTGGTTCACATCTCTTTT
Locus tag: YPK_1438
YPK_1438 -136 4.4 TTATGTGATCAAGCCCACTAAT
-84 3.9 ATTTGTGGTTCACATCTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Yersinia pestis KIM y1499 -136 4.4 TTATGTGATCAAGCCCACTAAT
-84 3.9 ATTTGTGGTTCACATCTCTTTT
Serratia proteamaculans 568 Spro_3416 -84 3.6 ATTTGCAATAGACCTCTCGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3183 -84 3.7 TTTTGCGTCCTTCCTCTCATTT
-31 3.9 AAATTTGGCCTGCCTCATATTT
Position: -116
Score: 4.7
Sequence: TTATGAGATGTCAGTCACAAAA
Locus tag: YPK_1444
YPK_1444 -116 4.7 TTATGAGATGTCAGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655 b2388 -116 4.1 TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2 STM2403 -116 3.9 TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895 CKO_00412 -116 4.5 TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02738 -117 4.4 AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638 Ent638_2921 -116 3.8 TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM y1505 -113 4.7 TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568 Spro_3407 -116 4.8 TTTTGTGATCCGGATCGCTAAT
Position: -310
Score: 5.4
Sequence: TAATGTGATCTGGATCTCAATT
Position: -260
Score: 4.6
Sequence: ATTTGTGATAGCGCTATCATTT
Locus tag: YPK_1549
YPK_1549 -310 5.4 TAATGTGATCTGGATCTCAATT
-260 4.6 ATTTGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2 STM2345 -192 4 AGCTGCGATCGTTATCACAAAG
-143 4.6 AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895 CKO_00488 -192 4.6 ATCTGTGATCATATTCACAAAG
-143 4.5 ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01748 -155 4.2 AACTGTGATACACCTCCCAAAG
-53 3.6 AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638 Ent638_2847 -178 4.1 AGCTGCGATCAAGATCACAAAG
-129 4.6 AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM y1619 -208 5.4 TAATGTGATCTGGATCTCAATT
-158 4.6 ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3772 -246 4.5 TAATGTGATTAACATCCAAAAA
-196 4 AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202 ETAE_3025 -210 4.3 TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320 PMI1778 -139 4.2 AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1978 -195 3.8 GCTAGTGATATTAGTCACAAAT
-145 4.7 AATTGTGATAGCGCTATCATTT
Position: -312
Score: 5.1
Sequence: TATAGTGATCTGCATCACAGTT
Locus tag: YPK_1576
YPK_1576 -312 5.1 TATAGTGATCTGCATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: 5-keto-D-gluconate-5-reductase
Escherichia coli str. K-12 substr. MG1655 b4266 -81 5.1 TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2 STM4483 -81 4.3 CAGCGTGACATAAGTCACAAAT
Citrobacter koseri ATCC BAA-895 CKO_02793 -140 5.4 TAATGTGACATGTTTCACAAAT
Position: -4
Score: 3.9
Sequence: TATCATGAAAAACATCAAAAAT
Locus tag: YPK_1595
YPK_1595 -4 3.9 TATCATGAAAAACATCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycfR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1112 -114 3.7 ATTAATGATTGTTATAAAAAAT
-87 4.8 GTATGTGATCCAGATCACATCT
Salmonella typhimurium LT2 STM1214 -88 4.7 ACGTGTGATGTAGATCACATCT
Citrobacter koseri ATCC BAA-895 CKO_01942 -113 3.8 TATAATGATCGTTATAAAAAAA
-86 4.5 ACGTGTGACCTGGATCACATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01110 -95 4.9 ACGTGTGACATAGATCACATTA
Enterobacter sp. 638 Ent638_1627 -91 4.7 ACGTGTGATGCAGATCACATCT
Serratia proteamaculans 568 Spro_4435 -116 3.7 TTATTTGATAAAGATTATCAAA
Position: -166
Score: 4.4
Sequence: AAACGTGACGGCAATCAAACAT
Locus tag: YPK_1694
YPK_1694 -166 4.4 AAACGTGACGGCAATCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b1101 -154 4.4 AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2 STM1203 -155 4.4 AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895 CKO_01957 -229 4.4 AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01099 -155 4.4 AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638 Ent638_1616 -155 4.4 AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946 EAM_1466 -162 4.6 AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM y1767 -166 4.4 AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568 Spro_1914 -164 4.4 AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1805 -162 4.6 AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320 PMI2292 -156 4.5 AAACGTGACAGCTATCATATAT
Position: -152
Score: 3.8
Sequence: AAAGTTGATATATATCAATTTT
Locus tag: YPK_1702
YPK_1702 -152 3.8 AAAGTTGATATATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655 b1109 -154 3.9 AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2 STM1211 -154 4.1 AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -152 4.1 AAACTTGATGCACATCAATTTT
Enterobacter sp. 638 Ent638_1624 -153 4 AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946 EAM_1473 -55 3.7 TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM y1777 -152 3.8 AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568 Spro_1926 -153 4.3 AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -153 4 TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202 ETAE_2070 -166 4.3 TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320 PMI0875 -157 4.6 TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -154 3.8 GAATTTGATGTTGTTCAATTTT
Position: -57
Score: 3.7
Sequence: ATATTTGATCATGATCACTTCC
Locus tag: YPK_1712
YPK_1712 -57 3.7 ATATTTGATCATGATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655 b1127 -73 3.6 AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2 STM1227 -73 3.6 AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_01926 -73 3.6 AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638 Ent638_1640 -31 3.6 AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM y1791 -27 3.7 ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568 Spro_2009 -188 4.1 CGTCGTGAAGAAGATCACACAT
Position: -168
Score: 4
Sequence: ACATGTGCGACAGATCACATTC
Locus tag: YPK_1739
YPK_1739 -168 4 ACATGTGCGACAGATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: beta-D-galactosidase
Escherichia coli str. K-12 substr. MG1655 b0344 -110 4.7 TAATGTGAGTTAGCTCACTCAT
Citrobacter koseri ATCC BAA-895 CKO_02825 -110 4.4 TTGTGTGAGTCAGTTCACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_pKPN3p05871 -109 4.6 TAATGTGAGTCAGCTCACTCAT
Enterobacter sp. 638 Ent638_0928 -100 4.4 TTTTGTGATCGACTTCGCTTTG
Erwinia amylovora ATCC 49946 EAM_0926 -94 3.8 TGTTGCGATAGCCATCACATCC
Yersinia pestis KIM y1817 -168 4 ACATGTGCGACAGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1490 -149 4.1 CTTTGTGATCGCTTCCACTTTA
-92 4.5 ATATGTTATGGAAAACACAAAT
Position: -172
Score: 3.6
Sequence: TGATTTGATTTAATACAAATCA
Locus tag: YPK_1795
YPK_1795 -172 3.6 TGATTTGATTTAATACAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein TcyP
Escherichia coli str. K-12 substr. MG1655 b1729 -90 3.9 ATATAAGAGCCAGCTCACAGTT
Salmonella typhimurium LT2 STM1320 -91 3.9 ATATAAGAGCCAGCTCACAGTT
Citrobacter koseri ATCC BAA-895 CKO_01755 -90 3.7 ATATAAGAGGTCGGTCACAGTT
Yersinia pestis KIM y1878 -166 3.6 TGATTTGATTTAATACAAATCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2410 -176 3.7 TGACGTTATCTGCTGCACCCAT
Position: -64
Score: 4.3
Sequence: TATTGTGATCGCCATCACTTCC
Locus tag: YPK_1841
YPK_1841 -64 4.3 TATTGTGATCGCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -160
Score: 3.6
Sequence: TTTTTTTATTTATAGCACGAAC
Locus tag: YPK_1928
YPK_1928 -160 3.6 TTTTTTTATTTATAGCACGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1598 -93 4 TTATCTGATTTTACTCCCACTT
Salmonella typhimurium LT2 STM1484 -93 4 TTATCTGATTTTACTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_01604 -95 4 TTATCTGATTTTACTCCCACTT
Enterobacter sp. 638 Ent638_1914 -53 4.1 TATTTTAATAGGGTTCACTTTT
Yersinia pestis KIM y2013 -160 3.6 TTTTTTTATTTATAGCACGAAC
Position: -236
Score: 4
Sequence: TGTTGCGATTTGCAACGCAAAT
Locus tag: YPK_1974
YPK_1974 -236 4 TGTTGCGATTTGCAACGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldB
Ortholog function: Aldehyde dehydrogenase B (EC 1.2.1.22)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02991 -205 4.4 TGTTGCGATTTGCAACACATAA
Serratia proteamaculans 568 Spro_2410 -225 3.5 CGTTGCGACATGGGACACAAAA
Position: -72
Score: 3.4
Sequence: AATAGAGAAGGGGTTAATATTT
Position: -54
Score: 3.6
Sequence: ATTTGCGTTGCAAATCGCAACA
Locus tag: YPK_1975
YPK_1975 -72 3.4 AATAGAGAAGGGGTTAATATTT
-54 3.6 ATTTGCGTTGCAAATCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02992 -81 4.1 TTATGTGTTGCAAATCGCAACA
Serratia proteamaculans 568 Spro_2411 -76 3.4 TTTTGTGTCCCATGTCGCAACG
Position: -146
Score: 4.8
Sequence: TTATGTGCAGCAAATCACATAA
Locus tag: YPK_1981
YPK_1981 -146 4.8 TTATGTGCAGCAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1594 -108 4.1 AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2 STM1488 -65 3.8 AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01593 -107 3.6 AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01574 -104 3.8 AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638 Ent638_1919 -107 3.8 AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946 EAM_1710 -143 4.9 TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM y2110 -146 4.8 TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568 Spro_2283 -111 4.8 ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2258 -226 4.4 ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202 ETAE_1713 -113 4.8 ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320 PMI1292 -126 4.7 ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2226 -119 4.8 TTTCGTGCTGAATATCACATAT
Position: -283
Score: 4.3
Sequence: TTTTGTGATGTCAGTCAAAAGT
Locus tag: YPK_1999
YPK_1999 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655 b1901 -163 4.2 CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895 CKO_01050 -164 4 CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02396 -161 4 CGATGTGATAATGCTCTCGTAT
-72 3.6 TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638 Ent638_2476 -162 3.7 CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946 EAM_1698 -251 4.3 TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM y2096 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568 Spro_2245 -251 3.8 TTTTGTGACGGCTGTCATAAGT
Position: -146
Score: 4.3
Sequence: ACTTTTGACTGACATCACAAAA
Locus tag: YPK_2000
YPK_2000 -146 4.3 ACTTTTGACTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946 EAM_1697 -131 4.1 ACATATGAAGGCCATCACATAA
Yersinia pestis KIM y2095 -146 4.3 ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568 Spro_2244 -132 3.9 ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2274 -133 3.9 ACCTTTGACCAGCTTCACAAAA
Position: -103
Score: 4.3
Sequence: TATTTTGATAAGAATAACGTTA
Locus tag: YPK_2019
YPK_2019 -103 4.3 TATTTTGATAAGAATAACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsaB
Ortholog function: fructose 6-phosphate aldolase 2
Yersinia pestis KIM y2074 -103 4.3 TATTTTGATAAGAATAACGTTA
Serratia proteamaculans 568 Spro_2640 -88 4.7 TGATTTGATTTCGATCAAATAT
Position: -163
Score: 4.1
Sequence: TTTTATGATCCAGATCAATTTC
Position: -81
Score: 3.9
Sequence: AGATGTGATCTCGATTAGATCA
Locus tag: YPK_2049
YPK_2049 -163 4.1 TTTTATGATCCAGATCAATTTC
-81 3.9 AGATGTGATCTCGATTAGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655 b1256 -166 4.9 AAAATTGATTTAAATCACATTA
-82 3.8 TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2 STM1732 -82 4.2 AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895 CKO_01333 -82 3.9 TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -101 3.9 CATTGCGATCGGTAGCAAAAAT
-45 4 TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638 Ent638_2283 -121 3.7 AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM y2044 -69 3.9 AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568 Spro_2674 -135 3.8 TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202 ETAE_1528 -161 3.9 CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320 PMI1350 -168 4.6 AAATTTGATGTGGATCAATTAT
-85 3.8 AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -164 4.3 AACTTTGATTTGGATCAAGTTA
-39 3.8 TATTTTGATTGACTTTAAATCA
Position: -286
Score: 5.3
Sequence: TTTTGTGATTTAAATCACGAAA
Locus tag: YPK_2072
YPK_2072 -286 5.3 TTTTGTGATTTAAATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -241 5 AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2 STM1749 -242 4.9 AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895 CKO_01318 -242 4.9 AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -237 4.7 ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638 Ent638_2304 -253 4.1 TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946 EAM_1900 -223 3.9 ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM y2023 -286 5.3 TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568 Spro_2704 -278 5.1 TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -315 4.5 AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202 ETAE_1508 -265 5 TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320 PMI1486 -246 5.4 TATTGTGATGTAGATCACTTTA
-187 3.7 AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -237 3.7 TATTTTTATTAGATTAAAAATT
-138 4.6 TTATGTGATTAAGATCAATATA
Position: -208
Score: 4.9
Sequence: TATTGTGAGATTGCTCATATAA
Locus tag: YPK_2073
YPK_2073 -208 4.9 TATTGTGAGATTGCTCATATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM y2145 -208 4.9 TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568 Spro_2705 -203 4.3 AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202 ETAE_1506 -206 4 AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2497 -157 4.1 TGGTGTGATGGTGGTCATGAAT
Position: -142
Score: 5.1
Sequence: ATTTGCGATTTTTATCACATTT
Locus tag: YPK_2095
YPK_2095 -142 5.1 ATTTGCGATTTTTATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655 b1778 -137 5.2 AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2 STM1291 -107 4.7 TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895 CKO_01799 -107 4.9 AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01198 -135 5.1 AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638 Ent638_1676 -137 5.2 ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946 EAM_1930 -137 5.2 AATGGTGATCTGCATCACAATT
Yersinia pestis KIM y2164 -85 5.1 ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568 Spro_2727 -143 5.7 ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2343 -135 5.6 TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202 ETAE_1484 -91 4.9 GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320 PMI1503 -137 5.3 TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2557 -267 4.6 ATATGCGAGTCACATCACAATA
Position: -227
Score: 5.1
Sequence: AAATGTGATAAAAATCGCAAAT
Locus tag: YPK_2096
YPK_2096 -227 5.1 AAATGTGATAAAAATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b1779 -226 5.3 AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2 STM1290 -226 4.8 AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_01800 -226 5 AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -225 5.2 AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638 Ent638_1675 -225 5.7 AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1931 -215 5.4 AATTGTGATGCAGATCACCATT
Yersinia pestis KIM y2165 -218 5.1 AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568 Spro_2728 -227 5.6 ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -235 5.8 AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202 ETAE_1483 -227 5.1 TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320 PMI1504 -226 5.6 AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -224 5.4 TATTGTGATGTGACTCGCATAT
Position: -112
Score: 4.1
Sequence: AATTGAGAGACAGGTCACAATC
Locus tag: YPK_2107
YPK_2107 -112 4.1 AATTGAGAGACAGGTCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655 b1189 -116 4.7 AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2 STM1803 -107 4.6 ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01193 -107 4.5 AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02309 -106 4.1 TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638 Ent638_2363 -107 4.3 AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568 Spro_2746 -113 4.6 AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320 PMI1509 -121 4.7 AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2561 -114 5.4 AATTGTGATCTAAATCATAAAT
Position: -113
Score: 3.8
Sequence: CTTTATGACTGCTTTCACCATT
Locus tag: YPK_2109
YPK_2109 -113 3.8 CTTTATGACTGCTTTCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655 b1187 -21 3.9 CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2 STM1805 -21 3.8 CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638 Ent638_2365 -21 3.8 CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM y2177 -113 3.8 CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320 PMI1510 -111 4.4 TTTTATGATGCCATTCACTATT
-84 3.8 ATGGTTGAGCTATATCAAAATT
Position: -112
Score: 3.7
Sequence: TGTTGTGTTTGTTATCGAACTA
Locus tag: YPK_2124
YPK_2124 -112 3.7 TGTTGTGTTTGTTATCGAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnd
Ortholog function: ribonuclease D
Escherichia coli str. K-12 substr. MG1655 b1804 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1817 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02321 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1955 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2235 -73 3.7 TGTTGTGTTTGTTATCGAACTA
Serratia proteamaculans 568 Spro_2759 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2371 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1167 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2135 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -131
Score: 4.1
Sequence: AATAGTGATGTATATCTCAACC
Locus tag: YPK_2125
YPK_2125 -131 4.1 AATAGTGATGTATATCTCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655 b1805 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1818 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02322 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1956 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2236 -80 4.1 AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568 Spro_2760 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2372 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1166 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2134 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -222
Score: 4.1
Sequence: TAATATGACCTGTGTCTAATTT
Locus tag: YPK_2134
YPK_2134 -222 4.1 TAATATGACCTGTGTCTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b1852 -208 3.9 TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02367 -225 3.8 TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM y2244 -231 4.1 TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320 PMI1157 -225 3.7 AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2122 -234 4.2 TAATTTAATGTTTTTCATAAAA
Position: -116
Score: 3.7
Sequence: AAATTAGACACAGGTCATATTA
Locus tag: YPK_2135
YPK_2135 -116 3.7 AAATTAGACACAGGTCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655 b1853 -151 3.9 AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02368 -134 3.6 AAATACGACCCTGATCATGTAA
Yersinia pestis KIM y2245 -152 3.7 AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320 PMI1156 -58 3.6 AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2121 -132 3.7 TTTTATGAAAAACATTAAATTA
Position: -145
Score: 3.9
Sequence: AGTTGTGATCGCTACCGCAACA
Locus tag: YPK_2185
YPK_2185 -145 3.9 AGTTGTGATCGCTACCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655 b1205 -105 4.5 AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2 STM1782 -105 4.4 ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895 CKO_01260 -104 4.1 AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02241 -100 4.1 TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638 Ent638_2343 -119 3.7 TGTTGTGACGAGAGTCATTAAT
-101 4 TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946 EAM_1581 -97 3.9 AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM y2296 -145 3.9 AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568 Spro_1985 -117 4.2 ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2185 -275 3.6 TAGCGTGATTATGAGAACGCTA
-117 3.8 ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2065 -189 4.1 AGTTGTGATCGTGTCCGCAATG
Position: -199
Score: 4.5
Sequence: CACTGTGATGTACTTAACAAAA
Locus tag: YPK_2361
YPK_2361 -199 4.5 CACTGTGATGTACTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655 b4208 -198 4.7 TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2 STM4398 -193 5.1 TTTTGTGAGCTAATTCGCATTA
-170 3.9 CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895 CKO_03624 -199 4.4 TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04601 -192 4.7 TTTTGTGAGCTATTTCGCGTTA
-169 3.8 ATGAGTGATATAACACTCACTT
Enterobacter sp. 638 Ent638_0378 -201 4.2 TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM y2447 -199 4.5 CACTGTGATGTACTTAACAAAA
-118 3.7 TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320 PMI1614 -102 4.4 TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu1965 -102 4.6 TATAGTAATCTGTGTCACAATA
Position: -125
Score: 4.6
Sequence: AATTGTTACCAAGATCACGAAT
Locus tag: YPK_2461
YPK_2461 -125 4.6 AATTGTTACCAAGATCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04789 -125 4.4 TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568 Spro_0625 -123 5 TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu0990 -159 3.7 AATAATGATAAAAAACAAATTT
-129 4.9 TATTGTTACTGAGATCACAATT
Position: -231
Score: 3.9
Sequence: ATAGATGAGCAATGTCACATAA
Locus tag: YPK_2464
YPK_2464 -231 3.9 ATAGATGAGCAATGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manX
Ortholog function: PTS enzyme IIAB, mannose-specific
Yersinia pestis KIM y2551 -231 3.9 ATAGATGAGCAATGTCACATAA
Position: -222
Score: 3.4
Sequence: TATTTTAACCCGCTGCGCGTTT
Locus tag: YPK_2505
YPK_2505 -222 3.4 TATTTTAACCCGCTGCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Escherichia coli str. K-12 substr. MG1655 b3172 -253 4.6 TATAGTGATCCACGCCACATTT
Erwinia amylovora ATCC 49946 EAM_0139 -121 3.5 AATAGTGAATAAAAATACAATA
Serratia proteamaculans 568 Spro_4779 -167 4 TATTGTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3480 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3239 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4742 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -129
Score: 3.8
Sequence: AGTTGTGCTATCTATCGCACCA
Locus tag: YPK_2535
YPK_2535 -129 3.8 AGTTGTGCTATCTATCGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638 Ent638_2642 -116 4 CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM y2629 -78 3.8 AGTTGTGCTATCTATCGCACCA
-76 3.6 TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568 Spro_1608 -297 3.7 ATGCTTGAAGTGGCTCTCACTT
-72 4.2 ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320 PMI0655 -71 4.7 CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1560 -74 4.4 ACATGTGATCACATTAACAAAT
Position: -71
Score: 4.7
Sequence: TAGTGTGATGGGTAGCACAGAA
Locus tag: YPK_2559
YPK_2559 -71 4.7 TAGTGTGATGGGTAGCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655 b2141 -68 4.9 TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2 STM2181 -68 4.6 TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_00648 -68 4.6 TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02582 -68 5 TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638 Ent638_2744 -68 4.7 TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM y2654 -32 4.7 TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568 Spro_1570 -62 4.3 ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2828 -69 4.5 ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202 ETAE_1164 -68 4.9 TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320 PMI0645 -71 5.2 TATTGTGATCCATAGCACACTT
Position: -75
Score: 4.7
Sequence: TAACGAGATATAAATCACAATT
Locus tag: YPK_2561
YPK_2561 -75 4.7 TAACGAGATATAAATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655 b2143 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 5.1 TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2 STM2183 -128 4.2 ATTTGCGATACGTCGCGCATTT
-78 4.8 CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00646 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 4.8 CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02584 -78 4.4 GAATGAGATATTCATCACATAT
Enterobacter sp. 638 Ent638_2746 -127 4.2 ATTTGCGATGCGTCGCGCAATT
-77 4.9 TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946 EAM_2202 -124 3.9 ACTTGCGATAAGTCTCTCATTT
-104 4.1 TTTGGTGATGCATTTCATTTAT
-74 4.7 TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM y2657 -75 5 TAATGAGATATAAATCACAATT
Serratia proteamaculans 568 Spro_1568 -127 4.1 ACTTGCGATACATCTCGCAATT
-77 4.5 TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2830 -130 4.6 AATTGAGATACATCTCGCATTT
-79 4.5 TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202 ETAE_1162 -76 4.9 AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320 PMI0643 -132 4.4 ATTTGAGATGTATCTCCCAATT
-82 5.1 AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1547 -75 4.7 CTATATGATATTTATCACATTA
Position: -323
Score: 4.4
Sequence: ATCTGTGAGAAAATTCACAGTT
Locus tag: YPK_2566
YPK_2566 -323 4.4 ATCTGTGAGAAAATTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655 b2150 -270 4.5 ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895 CKO_00641 -270 4.7 ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02588 -239 4.8 ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638 Ent638_2750 -271 4.4 ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM y2662 -212 4.4 ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568 Spro_1563 -229 4.4 ATCTGTGAGAAAATTCACAGAT
Position: -58
Score: 3.4
Sequence: GGGTGTGACCCGCATCATGCTT
Locus tag: YPK_2568
YPK_2568 -58 3.4 GGGTGTGACCCGCATCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655 b2153 -101 3.8 TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2 STM2193 -101 4 TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895 CKO_00638 -98 3.8 TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02591 -84 3.5 TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638 Ent638_2753 -84 3.9 TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568 Spro_1560 -121 4.3 AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320 PMI0639 -86 4.9 TAATGTGATTCAGCTCATCTAA
Position: -73
Score: 4.1
Sequence: TAATGCGCGCCGAATCACACTT
Locus tag: YPK_2581
YPK_2581 -73 4.1 TAATGCGCGCCGAATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655 b0820 -124 4.4 AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2 STM0838 -124 4 AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_02298 -148 4.4 AGATGTGTACGAAATCACATTT
Enterobacter sp. 638 Ent638_1311 -125 4.4 AGATGTGTACGAAATCACATTT
Yersinia pestis KIM y2677 -295 3.9 TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3010 -41 4 TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202 ETAE_2518 -40 4.8 TAATGTGAACAAAATCACGTTA
Position: -251
Score: 3.4
Sequence: ATTTGTCACCCCAGTCACTTAC
Position: -39
Score: 3.3
Sequence: TATAACGATGGCAATCTCAGTA
Locus tag: YPK_2671
YPK_2671 -251 3.4 ATTTGTCACCCCAGTCACTTAC
-39 3.3 TATAACGATGGCAATCTCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655 b0907 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0977 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02165 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00935 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1427 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2784 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2594 -78 3.5 AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320 PMI0711 -119 3.5 TATTTTTGTGTGCTACACATAA
Position: -84
Score: 4
Sequence: CAATATGATCCATATCAATTTT
Locus tag: YPK_2676
YPK_2676 -84 4 CAATATGATCCATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655 b0904 -156 3.6 TATTTTTATTTGGATAATCAAA
-78 3.8 AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2 STM0974 -78 4.4 AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_02167 -198 3.6 TATTTTTATTTGGATAATCAAA
-120 4.4 AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -121 3.8 AGATATGATCTATATCAATTTC
Enterobacter sp. 638 Ent638_1424 -78 3.8 AGATATGATCTATATCAATTTC
Yersinia pestis KIM y2789 -84 4 CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -79 4.5 CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320 PMI0706 -188 4 TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -88 4.7 AATTATGATCTATATCAAATTC
Position: -197
Score: 4.2
Sequence: AAGTTTGATGTAGCTAACGCTA
Locus tag: YPK_2693
YPK_2693 -197 4.2 AAGTTTGATGTAGCTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -185
Score: 4
Sequence: TAGCGTTAGCTACATCAAACTT
Locus tag: YPK_2694
YPK_2694 -185 4 TAGCGTTAGCTACATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655 b0880 -180 4 TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2 STM0943 -181 4 TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_02200 -210 3.9 ATCCGCGACATCTGTCACATTA
-181 4 TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00913 -270 4.2 AGAGGTTATGCTCATCACAAAT
-180 4 TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638 Ent638_1397 -209 3.8 ATCCGCGATATCTGTCACATTC
-180 3.9 TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568 Spro_1672 -205 4 TAGCGTTACCTGCTTCAAACTT
-49 3.9 TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320 PMI0688 -163 3.8 AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1592 -194 4.6 TATCGTTATCTATATCAAACTT
Position: -294
Score: 4.3
Sequence: AATTGAGATCACGATCACGGTA
Locus tag: YPK_2739
YPK_2739 -294 4.3 AATTGAGATCACGATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655 b2796 -179 4.2 ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2 STM2970 -176 4.2 ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895 CKO_04152 -176 4.1 ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03139 -158 4.2 ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638 Ent638_3249 -176 4.1 ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946 EAM_1294 -300 3.6 ATTTGTTAAAAATCGCAAAAAA
-180 3.9 AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM y2862 -286 4.3 AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3158 -195 3.7 TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320 PMI0672 -283 4.3 ATTTGAGATGGTGATCACGGTA
Position: -178
Score: 4.1
Sequence: AAATGTGCGGAATGTCAAAAAT
Locus tag: YPK_2764
YPK_2764 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655 b2169 -178 4.3 AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2 STM2206 -177 4.6 AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_00613 -50 4.1 AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02600 -177 3.5 AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638 Ent638_2763 -178 4.3 AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946 EAM_2223 -179 4.4 AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM y2887 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568 Spro_3230 -177 4 AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2729 -180 4.1 AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202 ETAE_2303 -199 4.1 AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1992 -180 4.7 AAATGTGAGTAATCTCAAAAAA
Position: -308
Score: 4.2
Sequence: ATTCGTGAAGTGGATCAACCAA
Locus tag: YPK_2778
YPK_2778 -308 4.2 ATTCGTGAAGTGGATCAACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -271 3.8 TGTTGCGATGAATGTCACATCC
-186 4.5 TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2 STM3135 -205 4.3 AAAATTGACACAGATCAAATAA
-155 4.6 ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895 CKO_00609 -115 3.9 GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638 Ent638_2767 -116 3.9 TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568 Spro_3238 -167 3.9 AACCGTGAAGTGGATCAACCAA
-48 4.1 AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202 ETAE_2289 -188 4.2 AATCGTGAGGCGGATCAACCAA
Position: -128
Score: 3.7
Sequence: GAATGTGCGTTCATGCACATTT
Locus tag: YPK_2784
YPK_2784 -128 3.7 GAATGTGCGTTCATGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b2175 -130 4.1 TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2 STM2214 -128 3.7 ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02608 -292 3.6 TAGGGTAATCTCGTTCTCGTTT
-234 4.2 AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638 Ent638_2771 -250 3.6 AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM y2908 -128 3.7 GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2735 -159 3.9 TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202 ETAE_2298 -131 4.4 AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320 PMI0831 -129 4.2 TTACGTGCTTTAGAGCACGTTT
Position: -256
Score: 4.4
Sequence: AAATGGGATCTGAATCCCAAAT
Locus tag: YPK_2790
YPK_2790 -256 4.4 AAATGGGATCTGAATCCCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2181 -158 3.7 AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02614 -204 3.8 AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946 EAM_2233 -177 3.6 AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM y2914 -238 4.4 AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568 Spro_3250 -214 4.2 AAATGCGAGCTGAGTCGCAAAA
-121 4.1 GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2740 -178 4 ATTCGTGATCAGTTTGGCATTA
-101 3.8 TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2865 -185 4.1 AAATGAGAGATTGATCTCACTT
-183 3.6 ATGAGAGATTGATCTCACTTTT
-141 3.8 TAATGTAATACTATAAACACAA
Position: -82
Score: 3.9
Sequence: ATTTGTGATAACAGTCATCTCA
Locus tag: YPK_2826
YPK_2826 -82 3.9 ATTTGTGATAACAGTCATCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbK
Ortholog function: hypothetical protein
Yersinia pestis KIM y2952 -73 3.9 ATTTGTGATAACAGTCATCTCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2508 -147 3.8 ATAAATAATATAAATCAAATAA
-90 3.7 GAATGTGATAACCATCGTGTAT
Position: -319
Score: 3.9
Sequence: ATTGGTGACTGACATCAAGATA
Position: -163
Score: 3.7
Sequence: TTATTTGTCTATGCTCACAGAA
Locus tag: YPK_2943
YPK_2943 -319 3.9 ATTGGTGACTGACATCAAGATA
-163 3.7 TTATTTGTCTATGCTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galE2
Ortholog function: UDP-galactose-4-epimerase
Escherichia coli str. K-12 substr. MG1655 b0759 -78 3.8 TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2 STM0776 -78 3.7 TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_02376 -36 3.7 TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00773 -78 3.7 TAACTTGTGCTATGTCACACTT
-44 4.1 ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM y3043 -163 3.7 TTATTTGTCTATGCTCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1389 -72 3.7 ATTCTCGCTGTAGATCACCTTT
Edwardsiella tarda EIB202 ETAE_2564 -195 3.7 TAGTGTAAGCGATACCACAAAC
Position: -254
Score: 4.5
Sequence: AATCGTGATCCTAATCACTGTT
Locus tag: YPK_2972
YPK_2972 -254 4.5 AATCGTGATCCTAATCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638 Ent638_1222 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1168 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3071 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1263 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1357 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2588 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0565 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -206
Score: 4.9
Sequence: TTTGGTGATATTTATCACAAAA
Locus tag: YPK_2996
YPK_2996 -206 4.9 TTTGGTGATATTTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Enterobacter sp. 638 Ent638_1194 -162 4.4 TTTGGTGACAAAACTCACAAAA
-128 3.6 ATTTGCGATACGAATTAATTTT
Yersinia pestis KIM y1203 -206 4.9 TTTGGTGATATTTATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1327 -202 5 TTTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202 ETAE_2616 -157 4.8 ATTGGTGATAGTTATCACAAAT
Proteus mirabilis HI4320 PMI0455 -150 4.6 ATAGGTGACTTTAATCACAAAT
Position: -214
Score: 5.1
Sequence: TTTTGTGATAAATATCACCAAA
Locus tag: YPK_2997
YPK_2997 -214 5.1 TTTTGTGATAAATATCACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655 b0678 -212 4.3 AAATTTAATTCGTATCGCAAAT
-178 4.6 TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2 STM0684 -205 3.7 AAAATTAATTCGCCTCGCAAAT
-171 4.7 TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895 CKO_02486 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 5.2 TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00699 -217 3.8 AAAATTAATTCGTATCGCAAAT
-183 5 TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638 Ent638_1193 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 4.6 TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946 EAM_1147 -195 4.9 ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM y1202 -214 5.1 TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568 Spro_1227 -194 5.3 TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1326 -180 5 TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202 ETAE_2617 -190 5 ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320 PMI0454 -217 4.9 ATTTGTGATTAAAGTCACCTAT
Position: -268
Score: 3.8
Sequence: TGGTGCGATTCGTGTCTCAAAA
Locus tag: YPK_3010
YPK_3010 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH2
Ortholog function: glutamate and aspartate transporter subunit
Yersinia pestis KIM y1189 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Proteus mirabilis HI4320 PMI0437 -142 4 TATTGAGAGATAGCTCTCGTAT
Position: -146
Score: 4.2
Sequence: TATTGTGATTAATCTTATATTG
Locus tag: YPK_3025
YPK_3025 -146 4.2 TATTGTGATTAATCTTATATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybeD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b0631 -94 3.6 AAGTGTAATTTCCGTCCCCATA
Salmonella typhimurium LT2 STM0636 -93 4.2 AAGTGTGATTTTCGTCCCCATA
-35 3.9 AGTTGTTATTTTTTTTACGTAA
Citrobacter koseri ATCC BAA-895 CKO_02527 -91 4.4 AAGTGTGATTTCCATCCCCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00663 -97 4.4 AAGTGTGATTTCCATCCCCATA
Enterobacter sp. 638 Ent638_1166 -90 4.4 AAGTGTGATTTCCATCCCCATA
Yersinia pestis KIM y1174 -146 4.2 TATTGTGATTAATCTTATATTG
Position: -314
Score: 3.3
Sequence: ATAGCTGAAATCATTCAAAAAA
Position: -159
Score: 4.1
Sequence: TTATGTTATAGGCTTCGCCCTA
Position: -75
Score: 4.2
Sequence: TCATGAGATTTTAGTCACATTA
Locus tag: YPK_3035
YPK_3035 -314 3.3 ATAGCTGAAATCATTCAAAAAA
-159 4.1 TTATGTTATAGGCTTCGCCCTA
-75 4.2 TCATGAGATTTTAGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgS
Ortholog function: glycogen synthesis protein GlgS
Escherichia coli str. K-12 substr. MG1655 b3049 -225 3.4 AATAGTTTCCTTGCTTACATTT
-203 3.4 ATCTGTGTTAATAATAACACAG
-124 3.8 AAGTGTGATCGGGGACAATATA
Salmonella typhimurium LT2 STM3197 -222 3.3 TCGCGTGATAATTTTCATGCTT
-178 4.2 TCATGTGACCCATATCTCCTTA
-117 4.2 TATTGTGATTTTGCGCATTAAA
Citrobacter koseri ATCC BAA-895 CKO_04437 -118 3.4 AAGTGTGATGTCAGGCAACTGA
Position: -180
Score: 3.6
Sequence: TAGCGTGCTAATTATAGCATAA
Locus tag: YPK_3217
YPK_3217 -180 3.6 TAGCGTGCTAATTATAGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tesB
Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0452 -138 3.9 AAGTGTGGCACACATCACGCAT
Citrobacter koseri ATCC BAA-895 CKO_02706 -135 3.9 AAGTGTGGCATATCTCACTTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00415 -139 3.8 AAGTGTGGCACAGATCTCAGAT
Enterobacter sp. 638 Ent638_0920 -131 4 AAGTGTGGCACATATCACTTAT
Yersinia pestis KIM y1043 -153 3.6 TAGCGTGCTAATTATAGCATAA
Serratia proteamaculans 568 Spro_1111 -54 3.6 TGCCGTGATATTCCGCACACTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1162 -154 3.7 TAGTATGATTCAATAAACACAA
Position: -137
Score: 4.5
Sequence: ATCTGTGACCCCCTTAACATAA
Locus tag: YPK_3241
YPK_3241 -137 4.5 ATCTGTGACCCCCTTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM y1021 -137 4.5 ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568 Spro_1090 -135 4.2 ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320 PMI0108 -194 3.6 AAATTATAGTTAATTCACAATA
-147 3.6 TTAATTACTTGTGATCACATTA
-141 4.3 ACTTGTGATCACATTAACACAA
Position: -123
Score: 3.7
Sequence: TTATTTTATACAAAACATATAT
Locus tag: YPK_3306
YPK_3306 -123 3.7 TTATTTTATACAAAACATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00238 -208 3.7 AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM y0949 -217 3.7 TTATTTTATACAAAACATATAT
Serratia proteamaculans 568 Spro_0952 -136 4.2 TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320 PMI0351 -297 3.7 AATTGTTACTATTTTCTCTTAT
-228 3.7 TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1195 -232 3.9 TCAAGTGATTTAGTTCAAGCAA
Position: -84
Score: 4.8
Sequence: AAAAGTGATCTCGATCATACAT
Locus tag: YPK_3353
YPK_3353 -84 4.8 AAAAGTGATCTCGATCATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655 b2597 -81 4.8 TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895 CKO_03918 -40 5.2 TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02919 -88 5.6 AAATGTGATTTATATCACACAT
Enterobacter sp. 638 Ent638_3076 -81 5.4 ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946 EAM_2617 -83 5.2 AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568 Spro_0882 -83 4.8 ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3349 -86 4 AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202 ETAE_2834 -82 3.8 ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320 PMI0391 -82 4.6 AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1266 -87 5.1 AATAGTGATTTAGATCACCTTT
Position: -276
Score: 4.3
Sequence: TTATGTGAACGAATTAACACTG
Locus tag: YPK_3487
YPK_3487 -276 4.3 TTATGTGAACGAATTAACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655 b0118 -144 3.5 TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2 STM0158 -157 3.9 TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00124 -260 3.5 TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM y0771 -276 4.3 TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568 Spro_4008 -192 3.9 TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3778 -163 4.3 TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320 PMI2040 -177 4.5 TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3619 -261 3.6 TTCTGTGAACGAATTAACATCG
Position: -256
Score: 3.3
Sequence: ATTGGTGATCTTGTTATTACTG
Position: -60
Score: 3.2
Sequence: GAAATTGATTCGCCTAAAAAAT
Locus tag: YPK_3489
YPK_3489 -256 3.3 ATTGGTGATCTTGTTATTACTG
-60 3.2 GAAATTGATTCGCCTAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655 b0116 -224 3.3 AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2 STM0154 -153 3.5 GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895 CKO_03256 -95 3.3 AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00120 -105 3.3 AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM y0769 -253 3.3 ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568 Spro_4009 -246 3.6 TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320 PMI2044 -133 3.4 GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3621 -131 3.9 TGTTGCGAGTTCTGTCACGTTA
Position: -323
Score: 3.4
Sequence: AAGTGTGAATTTAAATTCAAAA
Position: -151
Score: 4.2
Sequence: AAATGTGCTGGGTTTCATGATT
Position: -139
Score: 3.3
Sequence: TTTCATGATTTCGGTCAAGGTC
Position: -74
Score: 3.4
Sequence: TTTTGAAATTGGTATTACCAAT
Position: -4
Score: 3.4
Sequence: AAATATGGCCTACAACAAAATA
Locus tag: YPK_3492
YPK_3492 -323 3.4 AAGTGTGAATTTAAATTCAAAA
-151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
-4 3.4 AAATATGGCCTACAACAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655 b0113 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0151 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03260 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0659 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0746 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0766 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4012 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0658 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2047 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -123
Score: 3.8
Sequence: TTACGTTATTGCAATAACCTAA
Locus tag: YPK_3498
YPK_3498 -123 3.8 TTACGTTATTGCAATAACCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655 b0108 -145 3.2 CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_03268 -146 3.4 TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM y0761 -123 3.8 TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320 PMI2049 -146 4.3 TAATGCGAACTTGCTCTCAATA
Position: -147
Score: 4.3
Sequence: AAATGTGATATGCATTATCAAT
Locus tag: YPK_3592
YPK_3592 -147 4.3 AAATGTGATATGCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2 STM0039 -97 3.7 AAACGAGCTATTCATCATATAT
Yersinia pestis KIM y3704 -147 4.1 AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568 Spro_0694 -120 4.7 AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320 PMI0011 -110 3.9 ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0587 -122 4.4 TATTGAGATGTAGATCATCAAT
Position: -184
Score: 3.7
Sequence: TGCGGTGAGATGGATCTCAATT
Locus tag: YPK_3627
YPK_3627 -184 3.7 TGCGGTGAGATGGATCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4567 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03410 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0541 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0615 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3743 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0660 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2416 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -151
Score: 5.5
Sequence: TAATGTGATTATGATCACATTT
Locus tag: YPK_3628
YPK_3628 -151 5.5 TAATGTGATTATGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM y3744 -154 3.8 CTTTGTCAATAACCTCACATAT
-115 5.5 TAATGTGATTATGATCACATTT
Serratia proteamaculans 568 Spro_0659 -181 3.9 AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0473 -182 4.9 AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202 ETAE_0482 -232 4.9 TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320 PMI2418 -180 5.2 TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0519 -178 5.5 TTGTGTGATTCACATCACATTT
Position: -293
Score: 3.6
Sequence: TAATTTAAAAATGTTCAAAAAA
Position: -249
Score: 4
Sequence: TGGCGTAACCAAGATCACAATT
Locus tag: YPK_3649
YPK_3649 -293 3.6 TAATTTAAAAATGTTCAAAAAA
-249 4 TGGCGTAACCAAGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655 b1512 -87 4.1 AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2 STM4073 -161 3.6 AACTCTCATCCAGATCACGTTT
-92 4 TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03508 -75 3.7 TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638 Ent638_3537 -122 3.4 TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1 plu3142 -137 4.3 AATTGTGATCTTGGCAATATTT
Position: -258
Score: 4.5
Sequence: AATTGGGATATTGCTCACAAAG
Locus tag: YPK_3658
YPK_3658 -258 4.5 AATTGGGATATTGCTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: frwC
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3949 -202 4 ATTTGCGACGCGTCTCACAAGA
-147 4.3 AGTTATGAGGCGGATCGCATTT
-57 3.9 TATTGTTTCCTCCATCAAAAAT
Salmonella typhimurium LT2 STM4112 -221 4.1 AAATGTAATGTAGCGCAAAAAG
-202 4 AAGTGCGAGTTGTCTCACAACT
-147 4.3 AGTTATGAAGCGGATCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_03045 -202 3.9 AATTGCGAGACACTTCACAAGT
-147 4.3 AGTTATGAGGCGGATCGCATTT
Yersinia pestis KIM y3777 -258 4.5 AATTGGGATATTGCTCACAAAG
Position: -96
Score: 4.8
Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: YPK_3724
YPK_3724 -96 4.8 TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -340
Score: 3.8
Sequence: AAGTGTGAAGTTTGGCAGAAAA
Locus tag: YPK_3775
YPK_3775 -340 3.8 AAGTGTGAAGTTTGGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655 b4214 -126 3.6 AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2 STM4404 -144 3.9 TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895 CKO_03615 -178 4.1 TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04608 -178 4.1 TTTTATGAGCGATAGCACAGAA
-126 3.7 AAATGTGAATCTTGCCAGAAAA
-57 3.9 TGATGCGATATAAATAAAACAA
Enterobacter sp. 638 Ent638_0393 -167 3.9 TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946 EAM_0455 -158 4.2 AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568 Spro_0454 -180 3.7 AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3601 -258 3.7 TAAAGTGATTATCGTCTCTAAA
Position: -128
Score: 3.8
Sequence: TTTTCTGCCAAACTTCACACTT
Position: -75
Score: 4.4
Sequence: TTTTGCGATACATATCGAATAT
Locus tag: YPK_3776
YPK_3776 -128 3.8 TTTTCTGCCAAACTTCACACTT
-75 4.4 TTTTGCGATACATATCGAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655 b4213 -118 3.8 AACTGTGATAGTGTCATCATTT
-85 3.8 AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2 STM4403 -145 3.7 TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_03616 -25 4.2 TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04607 -156 3.8 TTGTTTTATTTATATCGCATCA
-87 3.7 TTTTCTGGCAAGATTCACATTT
-35 4.2 TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638 Ent638_0392 -34 4 TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM y0653 -148 3.6 AACTGTGAGCGTCTACGCGTTA
-116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568 Spro_0453 -95 3.8 TTTTCTGCCACACTTCACAGTT
Position: -221
Score: 4.8
Sequence: ATCTGTGATTGCTCTCACACTT
Locus tag: YPK_3824
YPK_3824 -221 4.8 ATCTGTGATTGCTCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655 b4140 -202 4.1 TACCGTAATCTGGATCACTTTA
-152 4.3 ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2 STM4327 -203 4.1 TACCGTAATCTGGATCACTTAA
-153 4.1 TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895 CKO_03695 -156 4.1 TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04530 -140 3.7 ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638 Ent638_0327 -151 3.8 ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946 EAM_0417 -161 3.9 ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM y0607 -245 4.8 ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568 Spro_0407 -117 4.9 TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0623 -245 3.7 AACTGTGATTGTAGTCACGAGT
-185 3.6 AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202 ETAE_0312 -189 4.6 ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320 PMI2545 -188 4.7 TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4136 -188 5.6 ATATGTGATATTTATCACAATT
Position: -224
Score: 4.6
Sequence: AAGTGTGAGAGCAATCACAGAT
Locus tag: YPK_3825
YPK_3825 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655 b4139 -206 4.5 AGCGGTGATCTATTTCACAAAT
-156 4.2 TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2 STM4326 -209 4.2 AGCGGTGACCTATTTCACAAAA
-159 4.2 TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895 CKO_03696 -54 4.2 AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 -204 3.9 AGCGGTGACCCATTTCACAGAT
-154 3.8 ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638 Ent638_0326 -205 4.1 AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946 EAM_0416 -228 4.2 CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM y0606 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568 Spro_0406 -205 4.7 AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -272 4 ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202 ETAE_0311 -197 4.4 ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320 PMI2546 -206 4.1 ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -274 3.8 AGATATAATTGGGGTCACAGTT
-211 5.6 AATTGTGATAAATATCACATAT
Position: -86
Score: 3.7
Sequence: AAAATTGAAGGGTATCACGGTA
Locus tag: YPK_3841
YPK_3841 -86 3.7 AAAATTGAAGGGTATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaR
Ortholog function: L-rhamnose operon transcriptional activator RhaR
Escherichia coli str. K-12 substr. MG1655 b3906 -182 4.5 GAACGTGATGATGTTCACAATT
-147 4.5 TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2 STM4049 -182 4.3 GAACGTGATAGCGTTCACAGTT
-147 4 CGGTGTGATGTCGTCCGCATTT
-62 3.8 TAAGGTGAGGCCGATAACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04215 -204 3.8 GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638 Ent638_4065 -194 4.2 GAACGTGAGGGAGTTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0442 -144 3.9 CGGTGTGATCCTTGCCACACTT
Position: -97
Score: 4.2
Sequence: ATACGTGATCTGCCGCCCAAAA
Locus tag: YPK_3921
YPK_3921 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655 b4069 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2 STM4275 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895 CKO_03816 -101 4.3 TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04478 -101 3.9 TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638 Ent638_0276 -101 4.1 TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM y0510 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568 Spro_0297 -97 4 TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320 PMI3037 -97 4.5 TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0074 -98 4.2 TTGCGTGATCTTCCGCGCAAAA
Position: -149
Score: 5.4
Sequence: ATGTGTGATTTAAATCACAATT
Locus tag: YPK_3950
YPK_3950 -149 5.4 ATGTGTGATTTAAATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655 b3831 -144 5.2 TTATGTGATTTGCATCACTTTT
-92 4.2 CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2 STM3968 -144 5.1 TATTGTGATGAACATCACTTTT
-92 4.1 CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_00173 -143 5.2 TTATGTGATGTAAATCACTATT
-91 3.9 CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04327 -143 5.2 TAATGTGATGTGTATCACTATT
-91 4.1 CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638 Ent638_3962 -143 4.7 TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946 EAM_0200 -143 4.6 AATTGCGACTTGTATCACCTTT
-90 4 ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM y0444 -149 5.4 ATGTGTGATTTAAATCACAATT
-97 4 CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568 Spro_0244 -143 5.3 TTTTGTGACTTTAATCACAAAA
-125 3.7 AAAAGTTATGTAGATTGCATTC
-91 4.1 CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0185 -197 5.1 AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202 ETAE_0143 -148 4.7 TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320 PMI3532 -145 5.1 ATTTGTGATAACTATCACGTTT
-93 3.6 ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4417 -271 5.2 TTTTGTGATTTATATCTCAAAA
-219 4 TGAAGTGACATTTATCACTAAA
Position: -215
Score: 3.4
Sequence: CGATGCGCTGCCCATAACAAAA
Locus tag: YPK_3961
YPK_3961 -215 3.4 CGATGCGCTGCCCATAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpA
Ortholog function: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3452 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3556 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04873 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03812 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3855 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3284 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0435 -197 3.4 CGATGCGCTGCCCATAACAAAA
Edwardsiella tarda EIB202 ETAE_3320 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -72
Score: 3.5
Sequence: AAAACTGATTTATTTCGCTCAT
Position: -41
Score: 4.1
Sequence: TTTTTTGATGTGAGCCACACAG
Locus tag: YPK_3962
YPK_3962 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpB
Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3453 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3557 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04874 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03813 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3856 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3285 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0434 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2429 -145 3.5 TATCGCGATACAGTTCATCACT
Edwardsiella tarda EIB202 ETAE_3321 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -155
Score: 4.4
Sequence: ACCTGTGATTTTGATCACAATC
Locus tag: YPK_3991
YPK_3991 -155 4.4 ACCTGTGATTTTGATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655 b2241 -165 4.6 AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2 STM2284 -163 5 TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00536 -163 4.7 TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -165 4.3 TACTGTGAAACATCGCACAATT
-115 3.8 ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638 Ent638_2805 -163 4.1 TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM y0404 -231 3.6 AATTGTTACCTATTTTATGAAA
-155 4.4 ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568 Spro_0200 -231 3.6 CGCTGTGATGGATGGCGCAATT
-138 4.9 AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -148 5.1 TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202 ETAE_3115 -247 4 TACTGTGAGAGATCGCTCATAT
-142 4.8 TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320 PMI3592 -262 3.7 TACTGTGAAGTAATACTCAGTT
-170 5.5 ATTTGTGATTAGTATCACATAT
Position: -162
Score: 4.8
Sequence: AGTTGTGCTATGGCTCACAAAA
Locus tag: YPK_3995
YPK_3995 -162 4.8 AGTTGTGCTATGGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pldB
Ortholog function: Lysophospholipase L2 (EC 3.1.1.5)
Citrobacter koseri ATCC BAA-895 CKO_00166 -60 3.8 TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04321 -56 3.8 TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638 Ent638_3971 -56 4.3 TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM y0400 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568 Spro_0196 -88 3.8 TTGTAAGAATTGAATCACAATA
-53 4.2 TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202 ETAE_3343 -217 3.9 CGGTGTGATAATCCTCAAACTT
Position: -151
Score: 4
Sequence: AGGTGTTAGATTGATCACGTTT
Locus tag: YPK_4015
YPK_4015 -151 4 AGGTGTTAGATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Yersinia pestis KIM y0382 -151 4 AGGTGTTAGATTGATCACGTTT
Serratia proteamaculans 568 Spro_0179 -115 4 AGGTGTTAGATTGATCACGTTT
Edwardsiella tarda EIB202 ETAE_0119 -119 4 AGGTGTTAAATTGATCACGTTT
Position: -229
Score: 3.8
Sequence: TGGTGTGACGCCGCTCATTATT
Locus tag: YPK_4068
YPK_4068 -229 3.8 TGGTGTGACGCCGCTCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655 b4227 -98 3.7 AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895 CKO_03603 -130 3.7 AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM y0328 -229 3.8 TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568 Spro_4768 -163 4.3 TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4236 -68 3.7 TATTGTTAGCCTACTTACCATA
Position: -201
Score: 3.7
Sequence: AATTGTGAATAAAAATACAGTA
Position: -43
Score: 3.7
Sequence: TTTATTGACATAAATAAAAATA
Locus tag: YPK_4089
YPK_4089 -201 3.7 AATTGTGAATAAAAATACAGTA
-43 3.7 TTTATTGACATAAATAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2 STM4121 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03036 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4028 -44 3.8 AAATGTGAATAAAAATACACTA
Yersinia pestis KIM y0310 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4781 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3482 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3237 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -229
Score: 3.6
Sequence: TATTTTTATTTATGTCAATAAA
Position: -71
Score: 3.9
Sequence: TACTGTATTTTTATTCACAATT
Locus tag: YPK_4090
YPK_4090 -229 3.6 TATTTTTATTTATGTCAATAAA
-71 3.9 TACTGTATTTTTATTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -66 3.7 TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2 STM4120 -66 3.9 TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895 CKO_03037 -27 4.3 TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -27 4 TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638 Ent638_4029 -66 4.2 TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946 EAM_0137 -66 3.8 TATTGTATTTTTATTCACTATT
Yersinia pestis KIM y0309 -223 3.6 TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568 Spro_4782 -71 4.3 TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -65 4 TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202 ETAE_3483 -65 3.9 TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320 PMI3236 -65 3.9 TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -65 3.9 TAATGTATTTTTATTCAAAAAA
Position: -139
Score: 4
Sequence: TTTCATGACGAATAACACATAT
Locus tag: YPK_4112
YPK_4112 -139 4 TTTCATGACGAATAACACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Yersinia pestis KIM y0046 -139 4 TTTCATGACGAATAACACATAT
Serratia proteamaculans 568 Spro_4797 -183 4.1 TTTTATGACGAAGCACACACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4266 -153 4.3 TTTTTTGACGCGCAACACACAT
Edwardsiella tarda EIB202 ETAE_3441 -139 3.9 TTTTTTGACGACACACACACAT
Position: -78
Score: 4
Sequence: AAATGTGAGTTAGCAAAAAAAT
Position: -22
Score: 4.4
Sequence: TTTTGTGAGCCGGATCATTAAA
Locus tag: YPK_4182
YPK_4182 -78 4 AAATGTGAGTTAGCAAAAAAAT
-22 4.4 TTTTGTGAGCCGGATCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uraA1
Ortholog function: Xanthine permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04013 -143 3.7 TGATGCGATTTAGCATACAAAA
Enterobacter sp. 638 Ent638_0073 -169 3.7 CAAAATGATTCTTCGCACATAT
Yersinia pestis KIM y0107 -60 4 AAATGTGAGTTAGCAAAAAAAT
Edwardsiella tarda EIB202 ETAE_0025 -56 3.7 TTTTGTGGCGCAGATCATTAAA
Proteus mirabilis HI4320 PMI2868 -54 3.7 TTTTGTGGCGCAGATCATTAAA
Position: -263
Score: 5.4
Sequence: TTATGTGATGTATTTCACGTTT
Locus tag: YPK_4219
YPK_4219 -263 5.4 TTATGTGATGTATTTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655 b3739 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3872 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00079 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4125 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3481 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4142 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0001 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3526 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3057 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -265 5.7 TTATGTGATTTAAATCACATTT