Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ExuR regulog to Klebsiella variicola At-22

Reference regulog properties
Source regulog: ExuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization
Effector: Galacturonate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Klebsiella variicola At-22
Orthologous TF(s) Kvar_0576
Regulated genes 8
Built upon 48 sites [see more]
Predicted regulatory interactions in Klebsiella variicola At-22
Locus tag Position Score Sequence
Position: -48
Score: 5.8
Sequence: AAAGTGGTATAACAAATCG
Locus tag: Kvar_0576
Kvar_0576 -48 5.8 AAAGTGGTATAACAAATCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: D-galacturonate transcriptional repressor, GntR family
Escherichia coli str. K-12 substr. MG1655 b3094 -47 6 AAAGTGGTATAACAAATAT
Citrobacter koseri ATCC BAA-895 CKO_04496 -47 6 AAAGTGGTATAACAAATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03522 -48 5.8 AAAGTGGTATAACAAATCG
Enterobacter sp. 638 Ent638_3548 -45 6.1 AAAGTGGTATAACAAATCA
Yersinia pestis KIM y3602 -105 5.8 TAAGTGGTATAACAAATCC
Serratia proteamaculans 568 Spro_4323 -57 5.8 TAAGTGGTATAACAAATCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 5.9 TAAGTGGTATAACAAATCA
Edwardsiella tarda EIB202 ETAE_0434 -68 5.8 AAAGTGGTATAACAACTCG
Position: -242
Score: 6.2
Sequence: AAAGTTGTATGACAAGTTA
Locus tag: Kvar_0577
Kvar_0577 -242 6.2 AAAGTTGTATGACAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Escherichia coli str. K-12 substr. MG1655 b3093 -129 6.2 AAAGTTGTATGACAAGTTA
Citrobacter koseri ATCC BAA-895 CKO_04495 -227 5.7 GAAGTTGTATGACAAGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03521 -240 6.2 AAAGTTGTATGACAAGTTA
Enterobacter sp. 638 Ent638_3547 -116 6.2 AAAGTTGTATGACAAGTTA
Yersinia pestis KIM y3601 -515 5.6 AAAtctGTATGACAAgTTa
Serratia proteamaculans 568 Spro_4322 -157 5.6 AAATCTGTATGACAAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0644 -185 6.2 AAAGTTGTATGACAAATTA
Edwardsiella tarda EIB202 ETAE_0435 -282 5.2 GAATCTGTATGACAAGTTA
Position: -78
Score: 6.2
Sequence: AAATTGGTGTGATAACTTT
Locus tag: Kvar_0579
Kvar_0579 -78 6.2 AAATTGGTGTGATAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -71 6.2 AAATTGGTGTGATAACTTT
Citrobacter koseri ATCC BAA-895 CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -90 6.2 AAATTGGTGTGATAACTTT
Enterobacter sp. 638 Ent638_3546 -70 6.2 AAATTGGTGTGATAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -67 5.4 TAATTGGTGTGATATCTTT
Position: -192
Score: 3.7
Sequence: AAAGTTGTTATACCAATAA
Locus tag: Kvar_1455
Kvar_1455 -192 3.7 AAAGTTGTTATACCAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuB
Ortholog function: D-mannonate oxidoreductase (EC 1.1.1.57)
Citrobacter koseri ATCC BAA-895 CKO_00608 -191 4.4 AAGTTGTTATACCAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02605 -193 3.7 AAAGTtGTtatACcAaTaa
Enterobacter sp. 638 Ent638_2768 -193 3.8 AAAGTtGTtatACcAaTaT
Yersinia pestis KIM y2903 -91 5.3 AAACTGGTCTAACAACTTT
Serratia proteamaculans 568 Spro_3239 -64 5.3 AAACTGGTCTGATAACTTC
Edwardsiella tarda EIB202 ETAE_2291 -89 4.7 CAAGTGGTCTAACACCTTT
Position: -34
Score: 5.5
Sequence: TTATTGGTATAACAACTTT
Locus tag: Kvar_1456
Kvar_1456 -34 5.5 TTATTGGTATAACAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Citrobacter koseri ATCC BAA-895 CKO_00609 -31 5.3 AATTTGGTATAACAACTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02604 -34 5.5 TTATTGGTATAACAACTTT
Enterobacter sp. 638 Ent638_2767 -32 5.7 ATATTGGTATAACAACTTT
Yersinia pestis KIM y2902 -240 5.2 AAATCGGTATAACAACATT
Serratia proteamaculans 568 Spro_3238 -80 5 AATTTGGTATAACAAGATT
Edwardsiella tarda EIB202 ETAE_2289 -101 4.7 GATTTGGTATGACAGATTA
Position: -34
Score: 4.3
Sequence: CAGGTTGTATGACTACTAT
Locus tag: Kvar_2694
Kvar_2694 -34 4.3 CAGGTTGTATGACTACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaB
Ortholog function: Altronate oxidoreductase (EC 1.1.1.58)
Escherichia coli str. K-12 substr. MG1655 b1521 -33 4.3 CAGGTTGTATGACTAATCA
Citrobacter koseri ATCC BAA-895 CKO_01541 -34 4.5 CAGGTTGTATGACTAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01640 -34 4.3 CAGGTTGTATGACTACTAT
Yersinia pestis KIM y3599 -69 6 TAATTGGTGTGATAACTTT
Edwardsiella tarda EIB202 ETAE_0437 -69 6.1 AAATTGGTGTGATAACTTC
Position: -195
Score: 4.5
Sequence: TCATTGGTATAACTAGTAT
Locus tag: Kvar_3524
Kvar_3524 -195 4.5 TCATTGGTATAACTAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: putative transcriptional regulator, LacI family
Citrobacter koseri ATCC BAA-895 CKO_02295 -157 5.8 TAAGTTGTGTGACAAGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -195 4.5 TCATTGGTATAACTAGTAT
Enterobacter sp. 638 Ent638_1314 -175 5.6 GAAGTTGTGTGACAAGTTC
Serratia proteamaculans 568 Spro_3600 -196 4.8 TAATTGGACTGATAAATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 4.8 AAATTGGTTTACCAAATTG
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