Propagation of NtrC regulog to Klebsiella variicola At-22

Reference regulog properties
Source regulog:	NtrC - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Klebsiella variicola At-22
Orthologous TF(s)	Kvar_5047
Regulated genes	12

Built upon 130 sites [see more]

Predicted regulatory interactions in *Klebsiella variicola At-22*
	Locus tag	Position	Score	Sequence
Position: -215 Score: 5.9 Sequence: TGCCCCAAAATGGTGCA Locus tag: Kvar_1355
	Kvar_1355	-215	5.9	TGCCCCAAAATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b2309	-162	5.5	TGCACTATCGTGGTGCA
Salmonella typhimurium LT2	STM2354	-211	4.4	GGAACTATCACGGTGCA
		-182	5.1	TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00478	-212	4.3	TTAACCATCACGGTGCG
		-183	5.8	TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02699	-215	5.3	TGCCCCAAAAGGGTGCA
		-185	4	TGGATCATTTCAGTGCA
Enterobacter sp. 638	Ent638_2858	-212	4.1	TTCCCTGTCACGGTGCG
		-182	5.2	TGACCCAATATGGTGCA
Yersinia pestis KIM	y1607	-123	4.8	AGCACTGAAATGGGGCA
Serratia proteamaculans 568	Spro_3326	-265	4.4	CGCACTGAATTAGGGCG
		-243	4.3	TGCACCATAATGATCCC

Position: -206 Score: 4.7 Sequence: CGCACCGTTGCGGTGCA Locus tag: Kvar_1658
	Kvar_1658	-206	4.7	CGCACCGTTGCGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655	b1988	-205	5.1	TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00955	-206	4.8	TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02437	-206	5	TGCACCGTTGTAGTGCG
Enterobacter sp. 638	Ent638_2564	-206	4.8	TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946	EAM_2112	-228	4.3	TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2888	-197	4.5	TGCTTTAAGATGGTGCA

Position: -193 Score: 4.8 Sequence: TGCATTGTTATGGTGCA Locus tag: Kvar_2546
	Kvar_2546	-193	4.8	TGCATTGTTATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01766	-211	3.9	GGCGCCAGCGTGGTGCT
		-193	5.1	TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946	EAM_0872	-247	3.7	GGCGCCAGTCTGGTGCT
		-229	4.3	TGCCCTATTTCGGGGCA
Yersinia pestis KIM	y0932	-205	5.5	TGCACCTAAATGGTGCG
Serratia proteamaculans 568	Spro_0932	-214	4.5	AGCGCCATTTTGGTGCT
		-195	4.5	CGCACTTTGATGGTGCG

Position: -305 Score: 4.1 Sequence: CGCGCCAAAAAAGGGCA Locus tag: Kvar_3093
	Kvar_3093	-305	4.1	CGCGCCAAAAAAGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Succinylornithine transaminase (EC 2.6.1.81)
Escherichia coli str. K-12 substr. MG1655	b1748	-323	4	TGCCCGCTTTTGGTGCG
		-303	3.9	TGCGTCAGAATGGCGCA
Salmonella typhimurium LT2	STM1303	-334	3.2	AGCGCGAAAATGGCACG
		-304	4.1	TGCGCCAGAACGGGGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01221	-305	4.1	CGCGCCAAAAAAGGGCA
Enterobacter sp. 638	Ent638_1696	-324	3.9	TGCACCATTTCGACGCG
		-304	3.9	TGCCCTCAAACAGGGCG

Position: -224 Score: 4.1 Sequence: TGCACCCTGATTGCGCA Position: -190 Score: 3.8 Sequence: TGCACTGATTTTGACCA Locus tag: Kvar_3341
	Kvar_3341	-224	4.1	TGCACCCTGATTGCGCA
		-190	3.8	TGCACTGATTTTGACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655	b1012	-168	3.9	TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01038	-223	4.1	TGCACCCTGATTGCGCA
		-189	3.8	TGCACTGATTTTGACCA
Enterobacter sp. 638	Ent638_1525	-227	4.1	TGCACCGCCATCGCGCA
Serratia proteamaculans 568	Spro_1823	-230	3.9	TGCACCTTTAATGAGCA

Position: -54 Score: 5.2 Sequence: AGCACCAGGATGGTGCA Locus tag: Kvar_3491
	Kvar_3491	-54	5.2	AGCACCAGGATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: potG
Ortholog function: Putrescine ABC transporter, ATP-binding component
Escherichia coli str. K-12 substr. MG1655	b0855	-47	5.4	CGCACCATTATGGTGCG
Citrobacter koseri ATCC BAA-895	CKO_02252	-53	4.6	CGCACTTTTATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00886	-39	5.2	AGCACCAGGATGGTGCA
Enterobacter sp. 638	Ent638_1369	-53	4.8	CGCACCGAAAGGGTGCG

Position: -159 Score: 5.3 Sequence: CGCCCCATCATGGTGCA Locus tag: Kvar_3540
	Kvar_3540	-159	5.3	CGCCCCATCATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b0811	-173	4.9	CGCACCAGATTGGTGCC
		-160	5.5	TGCCCCAGAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_02311	-172	5.1	TGCACTAAATCAGTGCC
		-159	5.6	TGCCCCAAAACGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00840	-172	4.2	CGCACCAAAATGACGCC
		-159	5	CGCCCCACCATGGTGCA

Position: -214 Score: 4.6 Sequence: CGCGCTATTTTGGTGCA Locus tag: Kvar_3685
	Kvar_3685	-214	4.6	CGCGCTATTTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00681	-171	4.6	CGCGCTATTTTGGTGCA

Position: -181 Score: 5.1 Sequence: TGCACTGTTGTGGTGCA Locus tag: Kvar_3968
	Kvar_3968	-181	5.1	TGCACTGTTGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655	b0450	-137	5.2	TGCACTGTCATAGTGCG
Salmonella typhimurium LT2	STM0462	-177	5.2	TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895	CKO_02708	-147	5.3	TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00413	-181	5.3	TGCACCGTTGTGGTGCA
Enterobacter sp. 638	Ent638_0918	-160	5.3	TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946	EAM_1004	-209	4.7	TGCATCATTTTAGTGCG
		-189	5.1	TGAACTATTTTGGTGCA
Yersinia pestis KIM	y1041	-191	5.8	TGCACCAACTTGGTGCG
Serratia proteamaculans 568	Spro_1109	-192	5.3	CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1160	-244	5.8	TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202	ETAE_1003	-152	5.2	TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320	PMI0126	-114	4.7	TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3857	-173	5.5	TGCACTAATTCGGTGCA

Position: -227 Score: 6 Sequence: TGCACCAAAATGGTGCT Locus tag: Kvar_5045
	Kvar_5045	-227	6	TGCACCAAAATGGTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655	b3870	-221	5.9	TGCACCAACATGGTGCT
		-189	5.4	AGCACTATATTGGTGCA
Salmonella typhimurium LT2	STM4007	-224	5.5	TGCACCAATGTGGTGCT
		-192	5.2	AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03140	-202	5.9	TGCACCAACATGGTGCT
		-170	5.4	AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04178	-251	6	TGCACCAAAATGGTGCT
		-219	5.2	AGCACTATTTTGGTGCA
Enterobacter sp. 638	Ent638_4096	-237	5.3	CGCACCATTATGGTGCT
		-205	5.6	AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946	EAM_0032	-288	5.1	TGCACCAAAATGGTGAC
		-256	5.3	AGCACCAGAATGGTGCG
Yersinia pestis KIM	y3804	-384	5.6	TGCACCAAAATAGTGCC
		-353	5.5	GGCACCAAAATAGTGCA
Serratia proteamaculans 568	Spro_4881	-220	5.2	TGCACCATTACAGTGCT
		-188	5.2	TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0029	-218	5.3	TGCACCAAACAAGTGCA
		-186	5.4	AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202	ETAE_3493	-220	5.5	TGCACCAAGATTGTGCG
		-188	5.2	TGCACCATTATGGAGCA
Proteus mirabilis HI4320	PMI2882	-223	5.9	TGCACCAAAATTGTGCA
		-189	5.8	TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0237	-303	5.1	CGCACTAATATTGTGCG
		-272	5.9	TGCACCAATATAGTGCA

Position: -39 Score: 6 Sequence: TGCACTAAATTGGTGCA Locus tag: Kvar_5046
	Kvar_5046	-39	6	TGCACTAAATTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655	b3869	-38	6.1	TGCACTAAAATGGTGCA
Salmonella typhimurium LT2	STM4006	-39	6.1	TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03143	-40	6	TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04177	-39	6	TGCACTAAATTGGTGCA
Enterobacter sp. 638	Ent638_4097	-38	5.8	TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946	EAM_0031	-40	5.7	TGCACTAAGTTGGTGCA
Yersinia pestis KIM	y3805	-29	5.3	TGCACCGAAACTGTGCA
Serratia proteamaculans 568	Spro_4882	-29	5.8	TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0028	-29	5.2	TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202	ETAE_3494	-28	6.1	TGCACCAAAATAGTGCA
Proteus mirabilis HI4320	PMI2883	-32	6.1	TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0236	-26	5.7	TGCACCAAAAAAGTGCA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtrC regulog to Klebsiella variicola At-22

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --