Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SoxR regulog to Klebsiella variicola At-22

Reference regulog properties
Source regulog: SoxR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: activator (repressor)
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Klebsiella variicola At-22
Orthologous TF(s) Kvar_4783
Regulated genes 3
Built upon 14 sites [see more]
Predicted regulatory interactions in Klebsiella variicola At-22
Locus tag Position Score Sequence
Position: -59
Score: 6.3
Sequence: ATCTCAACTTAACTTGAGGT
Locus tag: Kvar_2443
Kvar_2443 -59 6.3 ATCTCAACTTAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF00903
Ortholog function: Glyoxalase/bleomycin resistance protein/dioxygenase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01861 -59 6.9 ATCTCAAGTTAACTTGAGGT
Enterobacter sp. 638 Ent638_2697 -64 6.3 ACCTCAAGTTAACTTTAGCT
Position: -30
Score: 7.4
Sequence: TCCTCAAGTTAACTTGAGGT
Locus tag: Kvar_4783
Kvar_4783 -30 7.4 TCCTCAAGTTAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Escherichia coli str. K-12 substr. MG1655 b4063 -30 7.4 TCCTCAAGTTAACTTGAGGT
Salmonella typhimurium LT2 STM4266 -30 7.4 TCCTCAAGTTAACTTGAGGT
Citrobacter koseri ATCC BAA-895 CKO_03827 -30 7.4 TCCTCAAGTTAACTTGAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04463 -57 7.4 TCCTCAAGTTAACTTGAGGT
Enterobacter sp. 638 Ent638_0267 -31 7.4 TCCTCAAGTTAACTTGAGGT
Erwinia amylovora ATCC 49946 EAM_0317 -30 7.1 TCCTCAAGTTTACTTGAGGT
Position: -74
Score: 7.4
Sequence: ACCTCAAGTTAACTTGAGGA
Locus tag: Kvar_4784
Kvar_4784 -74 7.4 ACCTCAAGTTAACTTGAGGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxS
Ortholog function: Transcriptional activator of superoxide response regulon, AraC family
Escherichia coli str. K-12 substr. MG1655 b4062 -75 7.4 ACCTCAAGTTAACTTGAGGA
Salmonella typhimurium LT2 STM4265 -76 7.4 ACCTCAAGTTAACTTGAGGA
Citrobacter koseri ATCC BAA-895 CKO_03828 -76 7.4 ACCTCAAGTTAACTTGAGGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04462 -74 7.4 ACCTCAAGTTAACTTGAGGA
Enterobacter sp. 638 Ent638_0266 -87 7.4 ACCTCAAGTTAACTTGAGGA
Erwinia amylovora ATCC 49946 EAM_0316 -92 7.1 ACCTCAAGTAAACTTGAGGA