Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Buchnera aphidicola str. APS (Acyrthosiphon pisum)

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Orthologous TF(s) No orthologous TFs found
Regulated genes 22
Built upon 685 sites [see more]
Predicted regulatory interactions in Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Locus tag Position Score Sequence
Position: -132
Score: 3.6
Sequence: TTGATTTTAATGTA
Locus tag: BU002
BU002 -132 3.6 TTGATTTTAATGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895 CKO_00078 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4126 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3480 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4518 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3738 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04143 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0046 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3058 -130 4
Salmonella typhimurium LT2 STM3871 -122 4.2 TTGTTTGAAATCAC
Position: -101
Score: 3.7
Sequence: TTTATAAAAAACAT
Locus tag: BU004
BU004 -101 3.7 TTTATAAAAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpF
Ortholog function: ATP synthase B chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895 CKO_00076 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4128 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3478 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4516 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3736 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04141 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0044 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3060 -130 4
Salmonella typhimurium LT2 STM3869 -122 4.2 TTGTTTGAAATCAC
Position: -135
Score: 3.2
Sequence: ATGTTTTATTTTAA
Position: -131
Score: 3.5
Sequence: TTTATTTTAAACTA
Position: -26
Score: 3.3
Sequence: TTGATATATTTTAG
Locus tag: BU107
BU107 -135 3.2 ATGTTTTATTTTAA
-131 3.5 TTTATTTTAAACTA
-26 3.3 TTGATATATTTTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -118
Score: 3.6
Sequence: TTTATTAAAAATAA
Position: -63
Score: 4
Sequence: TTTATATATATAAA
Position: -3
Score: 3.7
Sequence: TTAATGTTAATAAA
Locus tag: BU154
BU154 -118 3.6 TTTATTAAAAATAA
-63 4 TTTATATATATAAA
-3 3.7 TTAATGTTAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: 32
Score: 3.7
Sequence: TTTATTAAAAAAAA
Locus tag: BU156
BU156 32 3.7 TTTATTAAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoD
Ortholog function: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00510 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2383 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2286 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02676 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3087 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2326 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3306 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1632 -465 3.6 TTTTATTAAAACAA
Position: -64
Score: 3.6
Sequence: TTTATTTTAAATAA
Position: -63
Score: 3.8
Sequence: TTATTTTAAATAAA
Position: -49
Score: 3.8
Sequence: TTTTTTTATATAAA
Position: -35
Score: 3.7
Sequence: TTTATCTGAATAAA
Locus tag: BU159
BU159 -64 3.6 TTTATTTTAAATAA
-63 3.8 TTATTTTAAATAAA
-49 3.8 TTTTTTTATATAAA
-35 3.7 TTTATCTGAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoG
Ortholog function: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00513 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2380 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2283 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02673 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3084 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2323.S -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3303 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1635 -465 3.6 TTTTATTAAAACAA
Position: -7
Score: 3.7
Sequence: TTTATTTATGACAT
Locus tag: BU161
BU161 -7 3.7 TTTATTTATGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoI
Ortholog function: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00515 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2378 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2281 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02671 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3082 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2321 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3301 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1637 -465 3.6 TTTTATTAAAACAA
Position: -26
Score: 4.3
Sequence: TTGATCTTTATTAA
Locus tag: BU163
BU163 -26 4.3 TTGATCTTTATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoK
Ortholog function: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00517 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2376 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2279 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02669 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3080 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2319 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3299 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1639 -465 3.6 TTTTATTAAAACAA
Position: -121
Score: 3.6
Sequence: TTTATATGAATTAA
Position: -28
Score: 4.5
Sequence: TTTATAAAAATCAA
Locus tag: BU305
BU305 -121 3.6 TTTATATGAATTAA
-28 4.5 TTTATAAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -23
Score: 3.5
Sequence: TTAATTTAAGAAAA
Locus tag: BU468
BU468 -23 3.5 TTAATTTAAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoE
Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Citrobacter koseri ATCC BAA-895 CKO_02733 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0981 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0428 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00390 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3879 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0105 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0439 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1086 -293 3.6 TTCTTTTACATTAA
Position: 19
Score: 3.6
Sequence: TTAATATGAATAAA
Locus tag: BU469
BU469 19 3.6 TTAATATGAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoD
Ortholog function: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02732 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0982 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0429 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00391 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3878 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0105A 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0440 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1087 -293 3.6 TTCTTTTACATTAA
Position: 22
Score: 4.1
Sequence: CTGATTTGAATCAT
Locus tag: BU587
BU587 22 4.1 CTGATTTGAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0048 -140 4 TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655 b3493 -116 3.8 TTGAGTGAAATCCA
Salmonella typhimurium LT2 STM3589 -116 4.2 GTGATATCAAACAA
Yersinia pestis KIM y3862 -201 4.1 TTGAATAAAATCAT