Propagation of Fnr regulog to Buchnera aphidicola str. APS (Acyrthosiphon pisum)
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. APS (Acyrthosiphon pisum) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 22 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -132
Score: 3.6 Sequence: TTGATTTTAATGTA
Locus tag: BU002
|
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| BU002 | -132 | 3.6 | TTGATTTTAATGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpB | ||||
| Ortholog function: ATP synthase A chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00078 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4126 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3480 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4518 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3738 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04143 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0046 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3058 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3871 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -101
Score: 3.7 Sequence: TTTATAAAAAACAT
Locus tag: BU004
|
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| BU004 | -101 | 3.7 | TTTATAAAAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpF | ||||
| Ortholog function: ATP synthase B chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00076 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4128 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3478 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4516 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3736 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04141 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0044 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3060 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3869 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -135
Score: 3.2 Sequence: ATGTTTTATTTTAA
Position: -131
Score: 3.5 Sequence: TTTATTTTAAACTA
Position: -26
Score: 3.3 Sequence: TTGATATATTTTAG
Locus tag: BU107
|
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| BU107 | -135 | 3.2 | ATGTTTTATTTTAA | |
| -131 | 3.5 | TTTATTTTAAACTA | ||
| -26 | 3.3 | TTGATATATTTTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -118
Score: 3.6 Sequence: TTTATTAAAAATAA
Position: -63
Score: 4 Sequence: TTTATATATATAAA
Position: -3
Score: 3.7 Sequence: TTAATGTTAATAAA
Locus tag: BU154
|
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| BU154 | -118 | 3.6 | TTTATTAAAAATAA | |
| -63 | 4 | TTTATATATATAAA | ||
| -3 | 3.7 | TTAATGTTAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoA | ||||
| Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00508 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2385 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2288 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02678 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3089 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2328 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3308 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1630 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: 32
Score: 3.7 Sequence: TTTATTAAAAAAAA
Locus tag: BU156
|
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| BU156 | 32 | 3.7 | TTTATTAAAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoD | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00510 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2383 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2286 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02676 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3087 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2326 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3306 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1632 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -64
Score: 3.6 Sequence: TTTATTTTAAATAA
Position: -63
Score: 3.8 Sequence: TTATTTTAAATAAA
Position: -49
Score: 3.8 Sequence: TTTTTTTATATAAA
Position: -35
Score: 3.7 Sequence: TTTATCTGAATAAA
Locus tag: BU159
|
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| BU159 | -64 | 3.6 | TTTATTTTAAATAA | |
| -63 | 3.8 | TTATTTTAAATAAA | ||
| -49 | 3.8 | TTTTTTTATATAAA | ||
| -35 | 3.7 | TTTATCTGAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoG | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00513 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2380 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2283 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02673 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3084 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2323.S | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3303 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1635 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -7
Score: 3.7 Sequence: TTTATTTATGACAT
Locus tag: BU161
|
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| BU161 | -7 | 3.7 | TTTATTTATGACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoI | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00515 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2378 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2281 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02671 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3082 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2321 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3301 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1637 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -26
Score: 4.3 Sequence: TTGATCTTTATTAA
Locus tag: BU163
|
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| BU163 | -26 | 4.3 | TTGATCTTTATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoK | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00517 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2376 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2279 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02669 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3080 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2319 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3299 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1639 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -121
Score: 3.6 Sequence: TTTATATGAATTAA
Position: -28
Score: 4.5 Sequence: TTTATAAAAATCAA
Locus tag: BU305
|
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| BU305 | -121 | 3.6 | TTTATATGAATTAA | |
| -28 | 4.5 | TTTATAAAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -23
Score: 3.5 Sequence: TTAATTTAAGAAAA
Locus tag: BU468
|
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| BU468 | -23 | 3.5 | TTAATTTAAGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoE | ||||
| Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02733 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0981 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0428 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00390 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3879 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0105 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0439 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1086 | -293 | 3.6 | TTCTTTTACATTAA |
|
Position: 19
Score: 3.6 Sequence: TTAATATGAATAAA
Locus tag: BU469
|
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| BU469 | 19 | 3.6 | TTAATATGAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoD | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02732 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0982 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0429 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00391 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3878 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0105A | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0440 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1087 | -293 | 3.6 | TTCTTTTACATTAA |
|
Position: 22
Score: 4.1 Sequence: CTGATTTGAATCAT
Locus tag: BU587
|
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| BU587 | 22 | 4.1 | CTGATTTGAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |