Propagation of KdgR regulog to Shigella flexneri 2a str. 301

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Shigella flexneri 2a str. 301
Orthologous TF(s)	SF1398
Regulated genes	9

Built upon 159 sites [see more]

Predicted regulatory interactions in *Shigella flexneri 2a str. 301*
	Locus tag	Position	Score	Sequence
Position: -130 Score: 5.5 Sequence: AAATGAAATGCTGTTTTTATA Position: -107 Score: 5.3 Sequence: AAATAAAATGAAGGTTCATTT Locus tag: SF1527
	SF1527	-130	5.5	AAATGAAATGCTGTTTTTATA
		-107	5.3	AAATAAAATGAAGGTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1703	-131	5.3	AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2	STM1348	-131	4.9	AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02161	-97	5.1	AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638	Ent638_1744	-107	5.3	ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568	Spro_2173	-134	5.2	ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1852	-94	5.6	TAATGAAATGGCGTTTTAATA

Position: -245 Score: 5.3 Sequence: AAATGAACCTTCATTTTATTT Position: -222 Score: 5.5 Sequence: TATAAAAACAGCATTTCATTT Locus tag: SF1528
	SF1528	-245	5.3	AAATGAACCTTCATTTTATTT
		-222	5.5	TATAAAAACAGCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655	b1702	-222	5.3	TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2	STM1349	-226	4.9	AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895	CKO_01725	-249	5.5	AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02160	-254	5.1	AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638	Ent638_1745	-249	5.3	AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568	Spro_2174	-364	5.2	AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1853	-227	5.6	TATTAAAACGCCATTTCATTA

Position: -286 Score: 5 Sequence: TTTTGAAACGCTGTTTTTGTT Locus tag: SF1705
	SF1705	-286	5	TTTTGAAACGCTGTTTTTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655	b1676	-286	5	TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2	STM1378	-286	4.7	TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01709	-286	5	TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02133	-285	5	ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638	Ent638_1768	-286	5.1	TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568	Spro_2187	-203	4.1	AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1867	-259	5.1	ATACGGAACGTCGTTTCAATT

Position: -130 Score: 6.2 Sequence: AAATAAAACATTGTTTTATTT Position: -63 Score: 5.4 Sequence: AAACGAAACAGTGTTTCACTA Locus tag: SF2853
	SF2853	-130	6.2	AAATAAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655	b2843	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2	STM3018	-123	6.2	AAATGAAACGTTGTTTTATTT
		-58	5.3	AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895	CKO_04220	-119	6.2	AAATGAAACAACGTTTTATTT
		-51	4.4	AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638	Ent638_3296	-127	5.4	AACTGAAACAACGTTTTAAAT
		-60	5	AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM	y1887	-201	6	TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2400	-209	6.1	AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202	ETAE_1898	-129	5.6	AATCAAAACAGCATTTCATTT

Position: -64 Score: 5.4 Sequence: ATAAAAAACGGCGTTTCATAA Locus tag: SF3130
	SF3130	-64	5.4	ATAAAAAACGGCGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655	b3090	-64	5.4	ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM	y3597	-133	5.2	ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0648	-70	6.2	AAATAAAACGGCGTTTCATTT

Position: -140 Score: 6 Sequence: AAATAAAACAGCGTTTCAATT Locus tag: SF3986
	SF3986	-140	6	AAATAAAACAGCGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655	b3909	-140	6	AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895	CKO_03092	-147	5.6	AAATGAAACATAGTTTTGTTA

Position: -35 Score: 6.1 Sequence: AAATGAAACATTGTTTTAATT Locus tag: SF4239
	SF4239	-35	6.1	AAATGAAACATTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Shigella flexneri 2a str. 301

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --