Propagation of Fnr regulog to Buchnera aphidicola str. Sg (Schizaphis graminum)
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. Sg (Schizaphis graminum) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 23 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -206
Score: 3.3 Sequence: ATCTTTGATAACAA
Position: -150
Score: 3.3 Sequence: TTTTTTTCAAAAAA
Locus tag: BUsg100
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| BUsg100 | -206 | 3.3 | ATCTTTGATAACAA | |
| -150 | 3.3 | TTTTTTTCAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -199
Score: 3.7 Sequence: TTTTTTAACCTCAA
Position: -179
Score: 3.9 Sequence: TTCATTTTAATAAA
Position: -132
Score: 3.8 Sequence: TTTATTTTTATTAA
Position: -82
Score: 3.5 Sequence: TTGATTTTTACTAA
Locus tag: BUsg147
|
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| BUsg147 | -199 | 3.7 | TTTTTTAACCTCAA | |
| -179 | 3.9 | TTCATTTTAATAAA | ||
| -132 | 3.8 | TTTATTTTTATTAA | ||
| -82 | 3.5 | TTGATTTTTACTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoA | ||||
| Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00508 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2385 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2288 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02678 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3089 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2328 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3308 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1630 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: 28
Score: 3.6 Sequence: CTAATTTAAATAAA
Locus tag: BUsg149
|
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| BUsg149 | 28 | 3.6 | CTAATTTAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoD | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00510 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2383 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2286 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02676 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3087 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2326 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3306 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1632 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -68
Score: 3.6 Sequence: TTTATATAAATAAT
Position: -38
Score: 3.9 Sequence: TTTATAAAAATAAA
Locus tag: BUsg152
|
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| BUsg152 | -68 | 3.6 | TTTATATAAATAAT | |
| -38 | 3.9 | TTTATAAAAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoG | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00513 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2380 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2283 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02673 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3084 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2323.S | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3303 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1635 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: 20
Score: 4 Sequence: TTTATTTTTATCAT
Locus tag: BUsg156
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| BUsg156 | 20 | 4 | TTTATTTTTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoK | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00517 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2376 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2279 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02669 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3080 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2319 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3299 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1639 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: 23
Score: 3.7 Sequence: TTTATTTCCATTAA
Locus tag: BUsg157
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| BUsg157 | 23 | 3.7 | TTTATTTCCATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoL | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00518 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2375 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2278 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02668 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3079 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2318 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3298 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1640 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -282
Score: 3.8 Sequence: TTTATTTTTATTAA
Locus tag: BUsg183
|
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| BUsg183 | -282 | 3.8 | TTTATTTTTATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -117
Score: 4.3 Sequence: TTGTAGTAAATCAA
Locus tag: BUsg199
|
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| BUsg199 | -117 | 4.3 | TTGTAGTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -133 | 4.6 | ATGTTGTAAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0659 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0660 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -131 | 4.6 | ATGTTGTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2046 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0152 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4011 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0767 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: 25
Score: 3.3 Sequence: ATAATTTTGATAAA
Position: 31
Score: 4 Sequence: TTGATAAAGAAAAA
Locus tag: BUsg453
|
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| BUsg453 | 25 | 3.3 | ATAATTTTGATAAA | |
| 31 | 4 | TTGATAAAGAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoD | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02732 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0982 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0429 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00391 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3878 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0105A | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0440 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1087 | -293 | 3.6 | TTCTTTTACATTAA |
|
Position: -84
Score: 4.5 Sequence: TTGATAAAAATAAA
Locus tag: BUsg565
|
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| BUsg565 | -84 | 4.5 | TTGATAAAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prmC | ||||
| Ortholog function: Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 | ||||
| Enterobacter sp. 638 | Ent638_2336 | -82 | 4.3 | TTGTCTTAAATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2191 | -134 | 4.8 | |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02233 | -143 | 4.4 | TTGTCTGAAATCAA |
| Salmonella typhimurium LT2 | STM1775 | -131 | 4.3 | TTGTCTTAAATCAT |
|
Position: 22
Score: 4.1 Sequence: CTGATTTGAATCAT
Locus tag: BUsg566
|
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| BUsg566 | 22 | 4.1 | CTGATTTGAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |