Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Escherichia coli 53638

Reference regulog properties
Source regulog: NsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli 53638
Orthologous TF(s) Ecol5_01000520
Regulated genes 9
Built upon 73 sites [see more]
Predicted regulatory interactions in Escherichia coli 53638
Locus tag Position Score Sequence
Position: -26
Score: 5.7
Sequence: GATGCATTTGAGATACATC
Locus tag: Ecol5_01000475
Ecol5_01000475 -26 5.7 GATGCATTTGAGATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Escherichia coli str. K-12 substr. MG1655 b2552 -47 5.7 GATGCATTTGAGATACATC
Salmonella typhimurium LT2 STM2556 -79 4.8 GATCCATTTACAATGCAAG
-47 5.8 GATGCATTTGATATACATC
Citrobacter koseri ATCC BAA-895 CKO_00235 -47 5.5 GATGTATTTGACATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02877 -47 6.3 GATGCATTTAAAATGCATC
Enterobacter sp. 638 Ent638_3037 -47 6.2 GATGCATATAAAATACATC
Yersinia pestis KIM y1321 -58 6.1 GATGCATTTAAAATACATG
Serratia proteamaculans 568 Spro_3639 -59 6 GATGCATTTAAAATGCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3251 -51 5.9 GATTCATATAAAATACAAC
Edwardsiella tarda EIB202 ETAE_2822 -45 6.2 GTTGCATTTAAAATACAAC
Proteus mirabilis HI4320 PMI1868 -61 5.4 GTTGTATTAAAAATACATG
Photorhabdus luminescens subsp. laumondii TTO1 plu3292 -64 5.4 GTTGCATTTAAATTACATG
Position: -47
Score: 6.4
Sequence: GATGCATTTAAAATACATC
Locus tag: Ecol5_01000555
Ecol5_01000555 -47 6.4 GATGCATTTAAAATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Escherichia coli str. K-12 substr. MG1655 b4209 -47 6.4 GATGCATTTAAAATACATC
Salmonella typhimurium LT2 STM4399 -47 6.4 GATGCATTTAAAATACAAC
Citrobacter koseri ATCC BAA-895 CKO_03623 -47 6.2 GATGTATTTAAAATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04602 -47 6.4 GATGCATTTAAAATACATC
Enterobacter sp. 638 Ent638_0379 -48 5.8 GATGCATTTAATATGCACC
Yersinia pestis KIM y0652 -77 5.1 CATGCATTTATTATGCATG
-53 4.8 GGTGTATAATAAATACATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -50 6 GATGCATTTAAAATGCAAT
Edwardsiella tarda EIB202 ETAE_0372 -47 5.7 ATTGCATTTAAAATACACC
Position: -47
Score: 5.4
Sequence: AATGCATTTCAAATATACT
Locus tag: Ecol5_01000994
Ecol5_01000994 -47 5.4 AATGCATTTCAAATATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tehA
Ortholog function: Tellurite resistance protein TehA
Escherichia coli str. K-12 substr. MG1655 b1429 -47 5.4 AATGCATTTCAAATATACT
Salmonella typhimurium LT2 STM1609 -35 5.4 AATGCATTTCAAATATACT
Citrobacter koseri ATCC BAA-895 CKO_01466 -35 5.6 AATGCATTTAAAATATACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01941 -47 5 GGTTCCTTTAAAATGCAAC
Enterobacter sp. 638 Ent638_1974 -35 5.2 CTAGCATTTCAAATATAAT
Position: -276
Score: 4.3
Sequence: GTGGTATTTTACATGCACT
Locus tag: Ecol5_01001240
Ecol5_01001240 -276 4.3 GTGGTATTTTACATGCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -165 4.3 GTGGTATTTTACATGCACT
-154 3.7 CATGCACTTACAATTGATT
Salmonella typhimurium LT2 STM4277 -167 4.4 GTGGTATTTTACATACACT
Citrobacter koseri ATCC BAA-895 CKO_03814 -170 4.3 GTGGTATTTTACATGCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -125 4.2 ACAATATTTCAAATGCATC
Position: -248
Score: 4.1
Sequence: TAGTCATTTTCAATACAAC
Locus tag: Ecol5_01002275
Ecol5_01002275 -248 4.1 TAGTCATTTTCAATACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Iron binding protein SufA for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -248 4.1 TAGTCATTTTCAATACAAC
Salmonella typhimurium LT2 STM1369 -248 3.8 TAGTCATTTTCTATACATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -116 4 TATGCTTATAAAAAGCACT
Enterobacter sp. 638 Ent638_1760 -249 3.8 TAGGCATTATCTATACATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -191 3.9 AATAAATTAAAGATATACC
Position: -286
Score: 4.8
Sequence: GTTGCATTTCAAATATTCG
Locus tag: Ecol5_01002894
Ecol5_01002894 -286 4.8 GTTGCATTTCAAATATTCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhO
Ortholog function: putative exported protein
Escherichia coli str. K-12 substr. MG1655 b1655 -217 4.8 GTTGCATTTCAAATATTCG
Salmonella typhimurium LT2 STM1432 -185 4.3 GTTGTATACAAAATATCTT
Enterobacter sp. 638 Ent638_1792 -223 3.9 GTTGCATTCGCAATATAGT
Position: -135
Score: 4.4
Sequence: CGAATATTTGAAATGCAAC
Locus tag: Ecol5_01002895
Ecol5_01002895 -135 4.4 CGAATATTTGAAATGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: grxD
Ortholog function: Probable monothiol glutaredoxin ydhD
Escherichia coli str. K-12 substr. MG1655 b1654 -135 4.4 CGAATATTTGAAATGCAAC
Salmonella typhimurium LT2 STM1433 -208 3.7 GATGTAAAAAAATAGCAAT
-135 3.7 AAGATATTTTGTATACAAC
Citrobacter koseri ATCC BAA-895 CKO_01665 -134 4.3 GAGATATTTAGAATGCAAC
Position: -104
Score: 5.7
Sequence: CATGTATATTAAATATAAC
Locus tag: Ecol5_01003074
Ecol5_01003074 -104 5.7 CATGTATATTAAATATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Escherichia coli str. K-12 substr. MG1655 b0873 -35 5.7 CATGTATATTAAATATAAC
Position: -38
Score: 5.1
Sequence: GATGTAATATAAATACATC
Locus tag: Ecol5_01003453
Ecol5_01003453 -38 5.1 GATGTAATATAAATACATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: hypothetical protein involved in nitrosative stress
Escherichia coli str. K-12 substr. MG1655 b2732 -38 5.1 GATGTAATATAAATACATC
Salmonella typhimurium LT2 STM2860 -40 4.4 GGTGTAAAATAAATACACC
Enterobacter sp. 638 Ent638_3209 -39 4.1 GATGTATTATTTATGCACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2415 -39 5.6 ATTGTATTTAAAATGCATC
Proteus mirabilis HI4320 PMI1959 -215 3.7 ATTGTTTGTTAAATAAAAT
-38 5.8 AATGCATTTTAAATGCAAC
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